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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066812 ID=TCONS_00066812|Name=TCONS_00066812|organism=Clytia hemisphaerica|type=transcript|length=1078bp
GGTTCCGTACCACCTTCTACCAACCCTGCAGTAGTAGCCCCTGTTGTCCA
TGTAGCTAGTACTGTACCACCTTCTACCAATTCTACATTGATGGCCCCTG
TTGCCCATGCAGCTGGTACTGTACCACCTACCAACCTTGCAGTAGTAGCT
CCTGTTGTCCATGCAGCTGGTACCGCACCACCTTCTACCAATTCTACATT
GATGGCCCCTGTTGCCCATGCAGCTGGTACTGTACCACCTACCAACCTTG
CAGTAGTAGCTCCTGTTGTCCATGCAGCTGGTACCGCACCAACTTCTACC
AATTCTACATTGATGGCCCCTGTTGCCCATGCAGCTGGTACCGTACCACC
TACCAACCCTGCAGTAGTAGCTCCTGTTGTCCATGCAGCTGGTACCGTAC
CGCCTTTAACCAACCCTGcagcaaaattcaaaatgaacttGATTCAATCA
AAAAAACTTTGGAACAAGCTGGAACTTACCATCTTGAAATAAGACGAAGA
AGAGTATGGCCTGATACTTTCCAAAAACTGAACCGCGTTTTCAAAAATGG
AGTCAAGGCAATAAAAGTGACATTTATTGGAGAGGAGGGAAGAGATAGGG
GTGGTCTCCTCAAGGAATTTTTTACCGTTGTCTTTGAAGATGTAAAGAAG
TATCTTGTTTGTTGTGGGAAAGGTGATGGATATACCTTTCACCATGATAT
GGAGAGGCTGAAAAGGCACGAGTATCTCCTACTTGGAAGGTTGTTTGGTC
TTGCTTTTGTTTATGGATGTCCAGGCCCTAGATATTTAATGCCTCCAGTT
GTCTCCAAAATCTTCTTTCAGCCAACCAGCTACAAATTTTTTATCCAAGA
TATCCCTGATTTGGATATCCAAACAAAGTTGAATAAAGTTGCTAATGCCA
AATCAGATGAGGAATTTCAGAAATCCCTGGAAGAGTTTCCAGAGAGATTT
GATGCCGTTTCAAGACCACTGTTAAATTTCTGTGATAAAGATGTATTCAT
ACAAGATGTGGTTCAACACTACACAACCTCGAAATgtgcggaagaaattt
tcgataTTGCTACTGGATTAGATTTTGC Run BLAST on NCBI protein sequence of TCONS_00066812-protein >TCONS_00066812-protein ID=TCONS_00066812-protein|Name=TCONS_00066812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
GSVPPSTNPAVVAPVVHVASTVPPSTNSTLMAPVAHAAGTVPPTNLAVVA
PVVHAAGTAPPSTNSTLMAPVAHAAGTVPPTNLAVVAPVVHAAGTAPTST
NSTLMAPVAHAAGTVPPTNPAVVAPVVHAAGTVPPLTNPAAKFKMNLIQS
KKLWNKLELTILK Run BLAST on NCBI transcript from alignment at scaffold_46:10883..11960 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066812 ID=TCONS_00066812|Name=TCONS_00066812|organism=Clytia hemisphaerica|type=transcript|length=1078bp|location=Sequence derived from alignment at scaffold_46:10883..11960 (Clytia hemisphaerica)
GCAAAATCTAATCCAGTAGCAAtatcgaaaatttcttccgcacATTTCGA
GGTTGTGTAGTGTTGAACCACATCTTGTATGAATACATCTTTATCACAGA
AATTTAACAGTGGTCTTGAAACGGCATCAAATCTCTCTGGAAACTCTTCC
AGGGATTTCTGAAATTCCTCATCTGATTTGGCATTAGCAACTTTATTCAA
CTTTGTTTGGATATCCAAATCAGGGATATCTTGGATAAAAAATTTGTAGC
TGGTTGGCTGAAAGAAGATTTTGGAGACAACTGGAGGCATTAAATATCTA
GGGCCTGGACATCCATAAACAAAAGCAAGACCAAACAACCTTCCAAGTAG
GAGATACTCGTGCCTTTTCAGCCTCTCCATATCATGGTGAAAGGTATATC
CATCACCTTTCCCACAACAAACAAGATACTTCTTTACATCTTCAAAGACA
ACGGTAAAAAATTCCTTGAGGAGACCACCCCTATCTCTTCCCTCCTCTCC
AATAAATGTCACTTTTATTGCCTTGACTCCATTTTTGAAAACGCGGTTCA
GTTTTTGGAAAGTATCAGGCCATACTCTTCTTCGTCTTATTTCAAGATGG
TAAGTTCCAGCTTGTTCCAAAGTTTTTTTGATTGAATCaagttcattttg
aattttgctgCAGGGTTGGTTAAAGGCGGTACGGTACCAGCTGCATGGAC
AACAGGAGCTACTACTGCAGGGTTGGTAGGTGGTACGGTACCAGCTGCAT
GGGCAACAGGGGCCATCAATGTAGAATTGGTAGAAGTTGGTGCGGTACCA
GCTGCATGGACAACAGGAGCTACTACTGCAAGGTTGGTAGGTGGTACAGT
ACCAGCTGCATGGGCAACAGGGGCCATCAATGTAGAATTGGTAGAAGGTG
GTGCGGTACCAGCTGCATGGACAACAGGAGCTACTACTGCAAGGTTGGTA
GGTGGTACAGTACCAGCTGCATGGGCAACAGGGGCCATCAATGTAGAATT
GGTAGAAGGTGGTACAGTACTAGCTACATGGACAACAGGGGCTACTACTG
CAGGGTTGGTAGAAGGTGGTACGGAACC Coding sequence (CDS) from alignment at scaffold_46:10883..11960 >TCONS_00066812 ID=TCONS_00066812|Name=TCONS_00066812|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_46:10883..11960 (Clytia hemisphaerica)
TTATTTCAAGATGGTAAGTTCCAGCTTGTTCCAAAGTTTTTTTGATTGAA
TCaagttcattttgaattttgctgCAGGGTTGGTTAAAGGCGGTACGGTA
CCAGCTGCATGGACAACAGGAGCTACTACTGCAGGGTTGGTAGGTGGTAC
GGTACCAGCTGCATGGGCAACAGGGGCCATCAATGTAGAATTGGTAGAAG
TTGGTGCGGTACCAGCTGCATGGACAACAGGAGCTACTACTGCAAGGTTG
GTAGGTGGTACAGTACCAGCTGCATGGGCAACAGGGGCCATCAATGTAGA
ATTGGTAGAAGGTGGTGCGGTACCAGCTGCATGGACAACAGGAGCTACTA
CTGCAAGGTTGGTAGGTGGTACAGTACCAGCTGCATGGGCAACAGGGGCC
ATCAATGTAGAATTGGTAGAAGGTGGTACAGTACTAGCTACATGGACAAC
AGGGGCTACTACTGCAGGGTTGGTAGAAGGTGGTACGGAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066812-exon-scaffold_46-1491911889:10883..11960 | TCONS_00066812-exon-scaffold_46-1491911889:10883..11960 | Clytia hemisphaerica | exon |
| TCONS_00066812-exon-scaffold_46-1510915933:10883..11960 | TCONS_00066812-exon-scaffold_46-1510915933:10883..11960 | Clytia hemisphaerica | exon |
| TCONS_00066812-exon-scaffold_46-1575043694:10883..11960 | TCONS_00066812-exon-scaffold_46-1575043694:10883..11960 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:10883..11960 . |
Blast
The following BLAST results are available for this feature:
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