TCONS_00066819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066819
Unique NameTCONS_00066819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066819 ID=TCONS_00066819|Name=TCONS_00066819|organism=Clytia hemisphaerica|type=transcript|length=845bp
ATGGATCTTTGAACTCGTACATTTATCGAGTGACCCCTACTATATCTACA
ATCCAATTCTCAAAAGAACTTCTTCAAAAATCGTTCAAAGCAGCTGTAAA
AATTGGAAAAGCCGGGAGTCCTGATAACATCACCGCTAAGGACCTATCTT
TGAACCCAAAAGCCTCAGTTGAGGGTTTACAGTACGTTGTCAAATGTAGT
TTATCGTCTGGTACTTTTCCAACTCAATGGAAAACTTCTAAAGTATCTGC
AGTCTTCAAGAAAGGCTCTAAATCGGATTGTTCAAATTACAGGCCGATAT
CATTACTCCCAAGTAAAATTGTTGAACATCTTGTCTGCTCACAATTAACT
GACCATCTCAGAGAGCATTGTCTCGAATCCGAACACCAGTGGGGCTTTAG
ACCGAATCGATCGACCGATGACATCCTACTCTATATGACCGAGAAGTGGA
GAAAAGCCATCGACTCCCGCCAATCAGTTGGTACCTTGTACATAGATTTT
TGAAAGGCATTTGATAGCGTATCCCACCCAATTCTACTAAAAAAGCTAAG
CACTTCAGGGGTATCAGGTGACTTTTTAACCTATCTTGAGAGTTATTTGT
CGAATCGTAAGCAATTCACTGTTATCAATGGAGTCAACTCAGATTGTACT
GATGTGGAATTCGGAGTACCGCAAGGGTCACTTATCGGCCCACAGTGCTT
TTCAGTTAATGTTAACGACATGAGTGAAAGCATTGATTGTGATCTAGATC
AGTTAGCTGACAACTCAACAGCGTACACATCAGATCCACATAGCGATATT
GTCATCAAAAACCTTCAAAGAAGTGCCCATCAACTTGAATCGTTT
Run BLAST on NCBI

protein sequence of TCONS_00066819-protein

>TCONS_00066819-protein ID=TCONS_00066819-protein|Name=TCONS_00066819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
GSLNSYIYRVTPTISTIQFSKELLQKSFKAAVKIGKAGSPDNITAKDLSL
NPKASVEGLQYVVKCSLSSGTFPTQWKTSKVSAVFKKGSKSDCSNYRPIS
LLPSKIVEHLVCSQLTDHLREHCLESEHQWGFRPNRSTDDILLYMTEKWR
KAIDSRQSVGTLYIDF
Run BLAST on NCBI

transcript from alignment at scaffold_46:141401..142245

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066819 ID=TCONS_00066819|Name=TCONS_00066819|organism=Clytia hemisphaerica|type=transcript|length=845bp|location=Sequence derived from alignment at scaffold_46:141401..142245 (Clytia hemisphaerica)
AAACGATTCAAGTTGATGGGCACTTCTTTGAAGGTTTTTGATGACAATAT
CGCTATGTGGATCTGATGTGTACGCTGTTGAGTTGTCAGCTAACTGATCT
AGATCACAATCAATGCTTTCACTCATGTCGTTAACATTAACTGAAAAGCA
CTGTGGGCCGATAAGTGACCCTTGCGGTACTCCGAATTCCACATCAGTAC
AATCTGAGTTGACTCCATTGATAACAGTGAATTGCTTACGATTCGACAAA
TAACTCTCAAGATAGGTTAAAAAGTCACCTGATACCCCTGAAGTGCTTAG
CTTTTTTAGTAGAATTGGGTGGGATACGCTATCAAATGCCTTTCAAAAAT
CTATGTACAAGGTACCAACTGATTGGCGGGAGTCGATGGCTTTTCTCCAC
TTCTCGGTCATATAGAGTAGGATGTCATCGGTCGATCGATTCGGTCTAAA
GCCCCACTGGTGTTCGGATTCGAGACAATGCTCTCTGAGATGGTCAGTTA
ATTGTGAGCAGACAAGATGTTCAACAATTTTACTTGGGAGTAATGATATC
GGCCTGTAATTTGAACAATCCGATTTAGAGCCTTTCTTGAAGACTGCAGA
TACTTTAGAAGTTTTCCATTGAGTTGGAAAAGTACCAGACGATAAACTAC
ATTTGACAACGTACTGTAAACCCTCAACTGAGGCTTTTGGGTTCAAAGAT
AGGTCCTTAGCGGTGATGTTATCAGGACTCCCGGCTTTTCCAATTTTTAC
AGCTGCTTTGAACGATTTTTGAAGAAGTTCTTTTGAGAATTGGATTGTAG
ATATAGTAGGGGTCACTCGATAAATGTACGAGTTCAAAGATCCAT

Coding sequence (CDS) from alignment at scaffold_46:141401..142245

>TCONS_00066819 ID=TCONS_00066819|Name=TCONS_00066819|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_46:141401..142245 (Clytia hemisphaerica)
TCAAAAATCTATGTACAAGGTACCAACTGATTGGCGGGAGTCGATGGCTT
TTCTCCACTTCTCGGTCATATAGAGTAGGATGTCATCGGTCGATCGATTC
GGTCTAAAGCCCCACTGGTGTTCGGATTCGAGACAATGCTCTCTGAGATG
GTCAGTTAATTGTGAGCAGACAAGATGTTCAACAATTTTACTTGGGAGTA
ATGATATCGGCCTGTAATTTGAACAATCCGATTTAGAGCCTTTCTTGAAG
ACTGCAGATACTTTAGAAGTTTTCCATTGAGTTGGAAAAGTACCAGACGA
TAAACTACATTTGACAACGTACTGTAAACCCTCAACTGAGGCTTTTGGGT
TCAAAGATAGGTCCTTAGCGGTGATGTTATCAGGACTCCCGGCTTTTCCA
ATTTTTACAGCTGCTTTGAACGATTTTTGAAGAAGTTCTTTTGAGAATTG
GATTGTAGATATAGTAGGGGTCACTCGATAAATGTACGAGTTCAAAGATC
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041782XLOC_041782Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066819-proteinTCONS_00066819-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066819-exon-scaffold_46-1491911889:141401..142245TCONS_00066819-exon-scaffold_46-1491911889:141401..142245Clytia hemisphaericaexon
TCONS_00066819-exon-scaffold_46-1510915933:141401..142245TCONS_00066819-exon-scaffold_46-1510915933:141401..142245Clytia hemisphaericaexon
TCONS_00066819-exon-scaffold_46-1575043694:141401..142245TCONS_00066819-exon-scaffold_46-1575043694:141401..142245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:141401..142245 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.580647	0.551246	1.32294	0.917462	2.80323	3.6614	1.60733	1.28311	0.729729	1.36866	1.99255	0.980368	0.70059	1.1233	0.268418	0.46719	0.686912	0.312231	0.583073	0.570888	0.519705	0.537879	0.542899	0.228256	3.16905	3.22924	0.331729	0.100736	0.575913	0.253054
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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