TCONS_00066827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066827
Unique NameTCONS_00066827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066827 ID=TCONS_00066827|Name=TCONS_00066827|organism=Clytia hemisphaerica|type=transcript|length=616bp
CTAAGGAAGGAAAGCAAAGATACTTTTgaaggagaaaaaaatgaaaaaaa
ttatctgAATGATAATGAAATCATATCAAATTCTTCCTTAACTTTCTGAA
TTTTAACAAGATCTAAAAGTTATTGGGCAAGCATTGGAAgaggaatattt
tcaaaaggcaTCACAAAATTTCAAGACATGGAAAACAATACAACAACGTT
CAATTCGACAGAAATCTCGAGGCACCACGTAAATTTTGCAGATCTTGTTC
TTTACATCTTGACGCGCGGTGTACCTGTGCTTTTTCACGCCTTTGGAATA
TATTCACTTCTCGCATCTGGCTACTACAGAAGACGAAACAATAAAGCTCA
ATTCATACTTCTATTTTGGCTAAGTACAGTCGAAATGTCACTAAATGGCA
CCAAAATTGTTATGAAATTGACATCTGTGGATCACCCAAAATGTACCCTT
GTTCTCAATATAATCCGGTCCGGGTTCTTGGTAACCCAGTTCGGAACAAC
AATGGTTACTATGACACTAGACCGTTTAGTTTTCATTCGGCAAAATATCA
AATACAAAGTAGAAGACGCAAGGAAGCATGTTTACGCCATTTTATGTTCA
TCTCTAATACTTTCAA
Run BLAST on NCBI

transcript from alignment at scaffold_46:374290..374905

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066827 ID=TCONS_00066827|Name=TCONS_00066827|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at scaffold_46:374290..374905 (Clytia hemisphaerica)
TTGAAAGTATTAGAGATGAACATAAAATGGCGTAAACATGCTTCCTTGCG
TCTTCTACTTTGTATTTGATATTTTGCCGAATGAAAACTAAACGGTCTAG
TGTCATAGTAACCATTGTTGTTCCGAACTGGGTTACCAAGAACCCGGACC
GGATTATATTGAGAACAAGGGTACATTTTGGGTGATCCACAGATGTCAAT
TTCATAACAATTTTGGTGCCATTTAGTGACATTTCGACTGTACTTAGCCA
AAATAGAAGTATGAATTGAGCTTTATTGTTTCGTCTTCTGTAGTAGCCAG
ATGCGAGAAGTGAATATATTCCAAAGGCGTGAAAAAGCACAGGTACACCG
CGCGTCAAGATGTAAAGAACAAGATCTGCAAAATTTACGTGGTGCCTCGA
GATTTCTGTCGAATTGAACGTTGTTGTATTGTTTTCCATGTCTTGAAATT
TTGTGAtgccttttgaaaatattcctcTTCCAATGCTTGCCCAATAACTT
TTAGATCTTGTTAAAATTCAGAAAGTTAAGGAAGAATTTGATATGATTTC
ATTATCATTcagataatttttttcatttttttctccttcAAAAGTATCTT
TGCTTTCCTTCCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041790XLOC_041790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066827-exon-scaffold_46-1491911889:374290..374905TCONS_00066827-exon-scaffold_46-1491911889:374290..374905Clytia hemisphaericaexon
TCONS_00066827-exon-scaffold_46-1510915933:374290..374905TCONS_00066827-exon-scaffold_46-1510915933:374290..374905Clytia hemisphaericaexon
TCONS_00066827-exon-scaffold_46-1575043694:374290..374905TCONS_00066827-exon-scaffold_46-1575043694:374290..374905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:374290..374905 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.541853	0	0.0531183	0.130875	0.201214	0.277987	0.484823	0.505679	0.123326	0.299838	0.81779	0.187179	1.08584	0	0.127561	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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