TCONS_00066829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066829
Unique NameTCONS_00066829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066829 ID=TCONS_00066829|Name=TCONS_00066829|organism=Clytia hemisphaerica|type=transcript|length=506bp
TTTTACGTGTGGAGAACGTCTTCAAGAACCCCATCATGCGTTGCTTCTGT
CAATTCCTCATGGAACCTCACATTCGAAACATATCACAGCTCACTTCTCA
ACAACTCACCAGAAACGTGTGGGGAAGCCCTTTGATTCGTGGATCGGACC
GCTCGCTTCAACCAATCACCGGGTcaggaaaaagcgggaaagTGGCGCGA
AACCGTTGGTACGTCGCGTACACACTACTACGCAACCCAGGTTTGACCAA
TGAACGATACCATGGTAGGTATCGAGATAACAGTCGAATCATACCCTCGG
AAAACGGAAGCATTAATGCGTGAAACagtaaaacattcgaaagtgaaaat
gaacttcaacattttatgtaaaaaaaggatttttgagACCACAATATGGA
TTTTCTTCGCTTTGTCAAGAAAGGAAtaatggtcaattttgacctGGATT
TTCCGAGACCTGGTTTATGGAATAATTCTGTGTATGAAAAAAGCACACGT
GAGACT
Run BLAST on NCBI

protein sequence of TCONS_00066829-protein

>TCONS_00066829-protein ID=TCONS_00066829-protein|Name=TCONS_00066829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
LRVENVFKNPIMRCFCQFLMEPHIRNISQLTSQQLTRNVWGSPLIRGSDR
SLQPITGSGKSGKVARNRWYVAYTLLRNPGLTNERYHGRYRDNSRIIPSE
NGSINA
Run BLAST on NCBI

transcript from alignment at scaffold_46:416097..416602

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066829 ID=TCONS_00066829|Name=TCONS_00066829|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at scaffold_46:416097..416602 (Clytia hemisphaerica)
AGTCTCACGTGTGCTTTTTTCATACACAGAATTATTCCATAAACCAGGTC
TCGGAAAATCCaggtcaaaattgaccattaTTCCTTTCTTGACAAAGCGA
AGAAAATCCATATTGTGGTctcaaaaatcctttttttacataaaatgttg
aagttcattttcactttcgaatgttttactGTTTCACGCATTAATGCTTC
CGTTTTCCGAGGGTATGATTCGACTGTTATCTCGATACCTACCATGGTAT
CGTTCATTGGTCAAACCTGGGTTGCGTAGTAGTGTGTACGCGACGTACCA
ACGGTTTCGCGCCActttcccgctttttcctgACCCGGTGATTGGTTGAA
GCGAGCGGTCCGATCCACGAATCAAAGGGCTTCCCCACACGTTTCTGGTG
AGTTGTTGAGAAGTGAGCTGTGATATGTTTCGAATGTGAGGTTCCATGAG
GAATTGACAGAAGCAACGCATGATGGGGTTCTTGAAGACGTTCTCCACAC
GTAAAA

Coding sequence (CDS) from alignment at scaffold_46:416097..416602

>TCONS_00066829 ID=TCONS_00066829|Name=TCONS_00066829|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_46:416097..416602 (Clytia hemisphaerica)
TCACGCATTAATGCTTCCGTTTTCCGAGGGTATGATTCGACTGTTATCTC
GATACCTACCATGGTATCGTTCATTGGTCAAACCTGGGTTGCGTAGTAGT
GTGTACGCGACGTACCAACGGTTTCGCGCCActttcccgctttttcctgA
CCCGGTGATTGGTTGAAGCGAGCGGTCCGATCCACGAATCAAAGGGCTTC
CCCACACGTTTCTGGTGAGTTGTTGAGAAGTGAGCTGTGATATGTTTCGA
ATGTGAGGTTCCATGAGGAATTGACAGAAGCAACGCATGATGGGGTTCTT
GAAGACGTTCTCCACACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041792XLOC_041792Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066829-proteinTCONS_00066829-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066829-exon-scaffold_46-1491911889:416097..416602TCONS_00066829-exon-scaffold_46-1491911889:416097..416602Clytia hemisphaericaexon
TCONS_00066829-exon-scaffold_46-1510915933:416097..416602TCONS_00066829-exon-scaffold_46-1510915933:416097..416602Clytia hemisphaericaexon
TCONS_00066829-exon-scaffold_46-1575043694:416097..416602TCONS_00066829-exon-scaffold_46-1575043694:416097..416602Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:416097..416602 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.132323	0	0	0.921459	1.86909	1.26086	0.286731	0.430932	0.890865	3.92575	6.08836	8.6291	11.0914	7.76317	5.68592	1.49708	0.949039	3.69167	2.88102	2.80761	3.87796	3.87537	2.63263	0.527952	0.919079	1.44401	0.980076
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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