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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066830 ID=TCONS_00066830|Name=TCONS_00066830|organism=Clytia hemisphaerica|type=transcript|length=2874bp
TCGTAATGAAGTAGAGGGAGAAAGTGGTGGTCTGGTTAAAGAAATAAGTT
CGGTCacaaattcgacaaaataaTGTCTTGCCAGTCAACTGCTGTCTCTA
ATACCGCTGTATTGGTGTTAGTCATTTTGATACCGACGCTGATTTTAATT
ATCATGCAGATTTACTCGCGACTTAAGAAAGGGAAATTGACAGCACAAGC
ACCATTCCTGTTCCTGCAGGACAATGACCGAAAtcgattgatgacgtcat
tagcGTTTGGTCACCTTTCGCTCcgtgtttttaacattttctccggaaat
ggccaaaaaactgtTGCACTAGCACTTTGCTCAAGAATATCAGATCAACC
AGAATATTACCTGTGTTCATTTTTCTCAACGATCTTGTTAGCAACTTTAT
ATGGGTTTTTAGCTTTCCCATTTTTTGCTTTGATCTCCTCTCCGCATTTA
CTGGTTTCGTCGATTGTTGGAATCGGATTTACCGTTTGGGAGATTGTTTA
TCTCGGACTACAGTTTGACTATAACGATGGCTGTAATTTGAAAGCTACCT
TACAACGAATCACTGCAATACTTGTGATAcctaatttcatttttcttgct
GTCATCTTGTTTGGTTTCGGATATCGCTTATACACATGCTTCAAAACAGG
ATGTTATGAACTTCCAACGAACGAGAAAAGCGTCGTAGATACACATCAAA
TCCtgtatttgaaaaatcttctacaaaggaaaaatatttcaaatcagTCA
CAGTTAACTCTgtttcaaaaactgaaaaatgttttcaaaccGTGGTTTAA
ATTTCCTGGTGAAATTCTTCAATGTATGTCTGTGATTTTCGTCTTGCTGT
ATTTGATTCTGTTTCTAATACAATACCAAGGGTTAAAATTACTCTACAAG
TTCTTAAAGGTACTGGGNTTGATACCGACGCTGATTTTAATTATCATGCA
GATTTACTCGCGACTTAAGAAAGGGAAATTGACAGCACAAGCACCATTCC
TGTTCCTGCAGGACAATGACCGAAAtcgattgatgacgtcattagcGTTT
GGCCACCTTTCGCTCcgtgtttttaacattttctccgGAAATGGCCAAAA
AGCTGTTGCACTAGCACTTTGCTCAAGAATATCAGATCAACCAGAATATT
ACCTGTGTTCATTTTTCTCAACGATCTTGTTAGCAACTTTATATGGGTTT
TTAGCTTTCCCATTTTTTGCTTTGATCTCCTCTCCGCATTTACTGGTTTC
GTCGATTGTTGGAATCGGATTTACCGTTTGGGAGATTGTTTATCTCGGAC
TACAGTTTGACTATAACGATGGCTGTAATTTGAAAGCTACCTTACAACGA
ATCACTGCAATACTTGTGATAcctaatttcatttttcttgctGTCATCTT
GTTTGGTTTCGGATATCGCTTATACACATGCTTCAAAACAGGATGTTATG
AACTTCCAACGAACGAGAAAAGCGTCGTAGATACACATCAAATCCtgtat
ttgaaaaatcttctacaaaggaaaaatatttcaaatcagTCACAGTTAAC
TCTgtttcaaaaactgaaaaatgttttcaaaccGTGGTTTAAATTTCCTG
GTGAAATTCTTCAATGTATGTCTGTGATTTTCGTCTTGCTGTATTTGATT
CTGTTTCTAATACAATACCAAGGGTTAAAATTACTCTACAAGTTCTTAAA
GGTACTGGGAACTAATCCTAACACAGACATCGAAGCAGTCTGGTATTTAG
CGTTGGTCATCAGTATTGTCTTGTACCTGGTCATGGTGGTTCATTTTTTG
TATTGTTACCAAAATGATACTCTGGCAATATACACGGGAAATCACAACCT
CTACCGGAAAGATGATGGTTGCCATAATATCGCTTTGTACCATCGATTGG
TGTTTCCAGCATACTTAATCAGTGCAATGTTCATTGGTTTTATATGTTGT
TATGTGTTGGTTGGTATCAGTGTTGGGATTGTTTATCTCCTAGCAGCTAT
AGCAACAGGATCACAAGTCTTGATATTGCTTCGCTACACATTATCTTTCG
TTGGCACTGGTATCGTTTTTAAAATCATCCAACGCTTAAGCATCCGTTAT
TATTTCTCCGATTTGGAATCATCAAAGCTTCAGATTAATTTAAAGCATCC
ACGTTTGTTTTACGTTCTAtccttctttttattcttcgtGAATGTGTTCA
CGGGTCTGATGTCCCTGGTCAAACGTCTCTTATTCATCATTTTCAGTTTT
CTGTTGTTTTACGGTCGCATTGATCGTAACCCAATGATGTTCTTCAAGAG
TATGGATATATCGAATTCGTACAGCTCCTTTTTACGTGTGGAGAACGTCT
TCAAGAACCCCATTATGCGTTGCTTCTGTCAATTCCTCATGGAACCTCAC
ATTCGAAACATATCACAGCTCACTTCTCAACAACTCACCAGAAACGTGTG
GGGAAGCCCTTTGATTCTTGGATCCGACCGCTCGCTTCAACCAATCACCG
GGTcaggaaaaagcgggaaagTGGCGCGGAACCGTTGGTACGTCACGTAC
ACGCTACTACGCAACCCAGGTTTGACCAATGAACGATACCATGGTAGGCA
TCGAGATAACAGTCGAATCATACCCTCGGAAAACGGAAGCATTAATGCGT
AAAACagtaaaacattcgaaagtgaaAATGAACTTAAAcattttatgtaa
aaaaaaggatttttgagACCACAATTTGGATTTTCTTCGCTTTGTCAAGA
AAGGAAtaatggtcaattttgacctGGATTTTCCGAGACCTGGTTTATGG
AATAATTCTGTGTATGAAAAAAGAACACTTGAGACTTTTACTGTAGtagt
tttaaatttgatatcatatttttt Run BLAST on NCBI protein sequence of TCONS_00066830-protein >TCONS_00066830-protein ID=TCONS_00066830-protein|Name=TCONS_00066830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=859bp
MSCQSTAVSNTAVLVLVILIPTLILIIMQIYSRLKKGKLTAQAPFLFLQD
NDRNRLMTSLAFGHLSLRVFNIFSGNGQKTVALALCSRISDQPEYYLCSF
FSTILLATLYGFLAFPFFALISSPHLLVSSIVGIGFTVWEIVYLGLQFDY
NDGCNLKATLQRITAILVIPNFIFLAVILFGFGYRLYTCFKTGCYELPTN
EKSVVDTHQILYLKNLLQRKNISNQSQLTLFQKLKNVFKPWFKFPGEILQ
CMSVIFVLLYLILFLIQYQGLKLLYKFLKVLXLIPTLILIIMQIYSRLKK
GKLTAQAPFLFLQDNDRNRLMTSLAFGHLSLRVFNIFSGNGQKAVALALC
SRISDQPEYYLCSFFSTILLATLYGFLAFPFFALISSPHLLVSSIVGIGF
TVWEIVYLGLQFDYNDGCNLKATLQRITAILVIPNFIFLAVILFGFGYRL
YTCFKTGCYELPTNEKSVVDTHQILYLKNLLQRKNISNQSQLTLFQKLKN
VFKPWFKFPGEILQCMSVIFVLLYLILFLIQYQGLKLLYKFLKVLGTNPN
TDIEAVWYLALVISIVLYLVMVVHFLYCYQNDTLAIYTGNHNLYRKDDGC
HNIALYHRLVFPAYLISAMFIGFICCYVLVGISVGIVYLLAAIATGSQVL
ILLRYTLSFVGTGIVFKIIQRLSIRYYFSDLESSKLQINLKHPRLFYVLS
FFLFFVNVFTGLMSLVKRLLFIIFSFLLFYGRIDRNPMMFFKSMDISNSY
SSFLRVENVFKNPIMRCFCQFLMEPHIRNISQLTSQQLTRNVWGSPLILG
SDRSLQPITGSGKSGKVARNRWYVTYTLLRNPGLTNERYHGRHRDNSRII
PSENGSINA Run BLAST on NCBI transcript from alignment at scaffold_46:416932..419805 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066830 ID=TCONS_00066830|Name=TCONS_00066830|organism=Clytia hemisphaerica|type=transcript|length=2874bp|location=Sequence derived from alignment at scaffold_46:416932..419805 (Clytia hemisphaerica)
aaaaaatatgatatcaaatttaaaactaCTACAGTAAAAGTCTCAAGTGT
TCTTTTTTCATACACAGAATTATTCCATAAACCAGGTCTCGGAAAATCCa
ggtcaaaattgaccattaTTCCTTTCTTGACAAAGCGAAGAAAATCCAAA
TTGTGGTctcaaaaatccttttttttacataaaatgTTTAAGTTCATTtt
cactttcgaatgttttactGTTTTACGCATTAATGCTTCCGTTTTCCGAG
GGTATGATTCGACTGTTATCTCGATGCCTACCATGGTATCGTTCATTGGT
CAAACCTGGGTTGCGTAGTAGCGTGTACGTGACGTACCAACGGTTCCGCG
CCActttcccgctttttcctgACCCGGTGATTGGTTGAAGCGAGCGGTCG
GATCCAAGAATCAAAGGGCTTCCCCACACGTTTCTGGTGAGTTGTTGAGA
AGTGAGCTGTGATATGTTTCGAATGTGAGGTTCCATGAGGAATTGACAGA
AGCAACGCATAATGGGGTTCTTGAAGACGTTCTCCACACGTAAAAAGGAG
CTGTACGAATTCGATATATCCATACTCTTGAAGAACATCATTGGGTTACG
ATCAATGCGACCGTAAAACAACAGAAAACTGAAAATGATGAATAAGAGAC
GTTTGACCAGGGACATCAGACCCGTGAACACATTCacgaagaataaaaag
aaggaTAGAACGTAAAACAAACGTGGATGCTTTAAATTAATCTGAAGCTT
TGATGATTCCAAATCGGAGAAATAATAACGGATGCTTAAGCGTTGGATGA
TTTTAAAAACGATACCAGTGCCAACGAAAGATAATGTGTAGCGAAGCAAT
ATCAAGACTTGTGATCCTGTTGCTATAGCTGCTAGGAGATAAACAATCCC
AACACTGATACCAACCAACACATAACAACATATAAAACCAATGAACATTG
CACTGATTAAGTATGCTGGAAACACCAATCGATGGTACAAAGCGATATTA
TGGCAACCATCATCTTTCCGGTAGAGGTTGTGATTTCCCGTGTATATTGC
CAGAGTATCATTTTGGTAACAATACAAAAAATGAACCACCATGACCAGGT
ACAAGACAATACTGATGACCAACGCTAAATACCAGACTGCTTCGATGTCT
GTGTTAGGATTAGTTCCCAGTACCTTTAAGAACTTGTAGAGTAATTTTAA
CCCTTGGTATTGTATTAGAAACAGAATCAAATACAGCAAGACGAAAATCA
CAGACATACATTGAAGAATTTCACCAGGAAATTTAAACCACggtttgaaa
acatttttcagtttttgaaacAGAGTTAACTGTGActgatttgaaatatt
tttcctttgtagaagatttttcaaatacaGGATTTGATGTGTATCTACGA
CGCTTTTCTCGTTCGTTGGAAGTTCATAACATCCTGTTTTGAAGCATGTG
TATAAGCGATATCCGAAACCAAACAAGATGACagcaagaaaaatgaaatt
aggTATCACAAGTATTGCAGTGATTCGTTGTAAGGTAGCTTTCAAATTAC
AGCCATCGTTATAGTCAAACTGTAGTCCGAGATAAACAATCTCCCAAACG
GTAAATCCGATTCCAACAATCGACGAAACCAGTAAATGCGGAGAGGAGAT
CAAAGCAAAAAATGGGAAAGCTAAAAACCCATATAAAGTTGCTAACAAGA
TCGTTGAGAAAAATGAACACAGGTAATATTCTGGTTGATCTGATATTCTT
GAGCAAAGTGCTAGTGCAACAGCTTTTTGGCCATTTCcggagaaaatgtt
aaaaacacgGAGCGAAAGGTGGCCAAACgctaatgacgtcatcaatcgaT
TTCGGTCATTGTCCTGCAGGAACAGGAATGGTGCTTGTGCTGTCAATTTC
CCTTTCTTAAGTCGCGAGTAAATCTGCATGATAATTAAAATCAGCGTCGG
TATCAANCCCAGTACCTTTAAGAACTTGTAGAGTAATTTTAACCCTTGGT
ATTGTATTAGAAACAGAATCAAATACAGCAAGACGAAAATCACAGACATA
CATTGAAGAATTTCACCAGGAAATTTAAACCACggtttgaaaacattttt
cagtttttgaaacAGAGTTAACTGTGActgatttgaaatatttttccttt
gtagaagatttttcaaatacaGGATTTGATGTGTATCTACGACGCTTTTC
TCGTTCGTTGGAAGTTCATAACATCCTGTTTTGAAGCATGTGTATAAGCG
ATATCCGAAACCAAACAAGATGACagcaagaaaaatgaaattaggTATCA
CAAGTATTGCAGTGATTCGTTGTAAGGTAGCTTTCAAATTACAGCCATCG
TTATAGTCAAACTGTAGTCCGAGATAAACAATCTCCCAAACGGTAAATCC
GATTCCAACAATCGACGAAACCAGTAAATGCGGAGAGGAGATCAAAGCAA
AAAATGGGAAAGCTAAAAACCCATATAAAGTTGCTAACAAGATCGTTGAG
AAAAATGAACACAGGTAATATTCTGGTTGATCTGATATTCTTGAGCAAAG
TGCTAGTGCAacagttttttggccatttccggagaaaatgttaaaaacac
gGAGCGAAAGGTGACCAAACgctaatgacgtcatcaatcgaTTTCGGTCA
TTGTCCTGCAGGAACAGGAATGGTGCTTGTGCTGTCAATTTCCCTTTCTT
AAGTCGCGAGTAAATCTGCATGATAATTAAAATCAGCGTCGGTATCAAAA
TGACTAACACCAATACAGCGGTATTAGAGACAGCAGTTGACTGGCAAGAC
AttattttgtcgaatttgtGACCGAACTTATTTCTTTAACCAGACCACCA
CTTTCTCCCTCTACTTCATTACGA Coding sequence (CDS) from alignment at scaffold_46:416932..419805 >TCONS_00066830 ID=TCONS_00066830|Name=TCONS_00066830|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_46:416932..419805 (Clytia hemisphaerica)
TTACGCATTAATGCTTCCGTTTTCCGAGGGTATGATTCGACTGTTATCTC
GATGCCTACCATGGTATCGTTCATTGGTCAAACCTGGGTTGCGTAGTAGC
GTGTACGTGACGTACCAACGGTTCCGCGCCActttcccgctttttcctgA
CCCGGTGATTGGTTGAAGCGAGCGGTCGGATCCAAGAATCAAAGGGCTTC
CCCACACGTTTCTGGTGAGTTGTTGAGAAGTGAGCTGTGATATGTTTCGA
ATGTGAGGTTCCATGAGGAATTGACAGAAGCAACGCATAATGGGGTTCTT
GAAGACGTTCTCCACACGTAAAAAGGAGCTGTACGAATTCGATATATCCA
TACTCTTGAAGAACATCATTGGGTTACGATCAATGCGACCGTAAAACAAC
AGAAAACTGAAAATGATGAATAAGAGACGTTTGACCAGGGACATCAGACC
CGTGAACACATTCacgaagaataaaaagaaggaTAGAACGTAAAACAAAC
GTGGATGCTTTAAATTAATCTGAAGCTTTGATGATTCCAAATCGGAGAAA
TAATAACGGATGCTTAAGCGTTGGATGATTTTAAAAACGATACCAGTGCC
AACGAAAGATAATGTGTAGCGAAGCAATATCAAGACTTGTGATCCTGTTG
CTATAGCTGCTAGGAGATAAACAATCCCAACACTGATACCAACCAACACA
TAACAACATATAAAACCAATGAACATTGCACTGATTAAGTATGCTGGAAA
CACCAATCGATGGTACAAAGCGATATTATGGCAACCATCATCTTTCCGGT
AGAGGTTGTGATTTCCCGTGTATATTGCCAGAGTATCATTTTGGTAACAA
TACAAAAAATGAACCACCATGACCAGGTACAAGACAATACTGATGACCAA
CGCTAAATACCAGACTGCTTCGATGTCTGTGTTAGGATTAGTTCCCAGTA
CCTTTAAGAACTTGTAGAGTAATTTTAACCCTTGGTATTGTATTAGAAAC
AGAATCAAATACAGCAAGACGAAAATCACAGACATACATTGAAGAATTTC
ACCAGGAAATTTAAACCACggtttgaaaacatttttcagtttttgaaacA
GAGTTAACTGTGActgatttgaaatatttttcctttgtagaagatttttc
aaatacaGGATTTGATGTGTATCTACGACGCTTTTCTCGTTCGTTGGAAG
TTCATAACATCCTGTTTTGAAGCATGTGTATAAGCGATATCCGAAACCAA
ACAAGATGACagcaagaaaaatgaaattaggTATCACAAGTATTGCAGTG
ATTCGTTGTAAGGTAGCTTTCAAATTACAGCCATCGTTATAGTCAAACTG
TAGTCCGAGATAAACAATCTCCCAAACGGTAAATCCGATTCCAACAATCG
ACGAAACCAGTAAATGCGGAGAGGAGATCAAAGCAAAAAATGGGAAAGCT
AAAAACCCATATAAAGTTGCTAACAAGATCGTTGAGAAAAATGAACACAG
GTAATATTCTGGTTGATCTGATATTCTTGAGCAAAGTGCTAGTGCAACAG
CTTTTTGGCCATTTCcggagaaaatgttaaaaacacgGAGCGAAAGGTGG
CCAAACgctaatgacgtcatcaatcgaTTTCGGTCATTGTCCTGCAGGAA
CAGGAATGGTGCTTGTGCTGTCAATTTCCCTTTCTTAAGTCGCGAGTAAA
TCTGCATGATAATTAAAATCAGCGTCGGTATCAANCCCAGTACCTTTAAG
AACTTGTAGAGTAATTTTAACCCTTGGTATTGTATTAGAAACAGAATCAA
ATACAGCAAGACGAAAATCACAGACATACATTGAAGAATTTCACCAGGAA
ATTTAAACCACggtttgaaaacatttttcagtttttgaaacAGAGTTAAC
TGTGActgatttgaaatatttttcctttgtagaagatttttcaaatacaG
GATTTGATGTGTATCTACGACGCTTTTCTCGTTCGTTGGAAGTTCATAAC
ATCCTGTTTTGAAGCATGTGTATAAGCGATATCCGAAACCAAACAAGATG
ACagcaagaaaaatgaaattaggTATCACAAGTATTGCAGTGATTCGTTG
TAAGGTAGCTTTCAAATTACAGCCATCGTTATAGTCAAACTGTAGTCCGA
GATAAACAATCTCCCAAACGGTAAATCCGATTCCAACAATCGACGAAACC
AGTAAATGCGGAGAGGAGATCAAAGCAAAAAATGGGAAAGCTAAAAACCC
ATATAAAGTTGCTAACAAGATCGTTGAGAAAAATGAACACAGGTAATATT
CTGGTTGATCTGATATTCTTGAGCAAAGTGCTAGTGCAacagttttttgg
ccatttccggagaaaatgttaaaaacacgGAGCGAAAGGTGACCAAACgc
taatgacgtcatcaatcgaTTTCGGTCATTGTCCTGCAGGAACAGGAATG
GTGCTTGTGCTGTCAATTTCCCTTTCTTAAGTCGCGAGTAAATCTGCATG
ATAATTAAAATCAGCGTCGGTATCAAAATGACTAACACCAATACAGCGGT
ATTAGAGACAGCAGTTGACTGGCAAGACAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066830-exon-scaffold_46-1491911889:416932..419805 | TCONS_00066830-exon-scaffold_46-1491911889:416932..419805 | Clytia hemisphaerica | exon |
| TCONS_00066830-exon-scaffold_46-1510915933:416932..419805 | TCONS_00066830-exon-scaffold_46-1510915933:416932..419805 | Clytia hemisphaerica | exon |
| TCONS_00066830-exon-scaffold_46-1575043694:416932..419805 | TCONS_00066830-exon-scaffold_46-1575043694:416932..419805 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:416932..419805 . |
Blast
The following BLAST results are available for this feature:
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