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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066831 ID=TCONS_00066831|Name=TCONS_00066831|organism=Clytia hemisphaerica|type=transcript|length=1039bp
ggCTTTTTTAGAAAGGAAAATAATGTTTATTGTAATCCTatgttttgatt
ggtcaatccttttgttttgaaagatgTGTCATGGGCTTCTTTGCTATATA
AAAATGCGAATGCTTAACGCTCTTTAAAAGACAGTCGCAAAACTTCACAA
GCAAGACGTATAACGCAAGGTACGGTAATTACAACACAATTAACAAGACA
CATTATGGTTCAATTAATAACCAAACGACAGAACGAATACACCAGTGAGG
TGCCAGAGAAACGATCAAAGTCACTCTCAAGGATGACAAAAAGCAAATCA
ACAAGCGATATCAAACAACGAGCTCAATCGCTGGAAAGAAGAGGAAAATT
ACTTCGAAAGAAATCAAGTAAAGAATTGTTAAAAGATGTTGATCGTAGTT
CGTGCGAATGTGGTGGTGCTACCAACCAAAATATTCAATCTTCCAAAGAC
TTTTCTACcaagaaaactttaaaacaaacgAAACATTTTAACAGTGGTAA
ACTCTTTGATGCAGTTTTAGATGGAGATTATTCCAAGGTTCGCCGATGCA
TCATCGAAGATCAACTAGAAGTTAACGAATACAGTCCTGAAGGAACCACC
GTTCTTCATCTCGCTTCGGCTGCCGGTGATGTAGACATTGTTGAACTTTT
AATCGAATGTGGAGCAGTCATTGATTGTAAAGACGTGAATGGACGCACTG
CCCTTGAATATGCAGTACTTTATGGTAATTTTGACAGTGCAACCACGCTT
ATTGAAAACGGCGCCGATTccaaatgcattaaaaatggatTCCATTAAAC
TTTTATTCTGATGCACCTTTAATAGAagtaatatttatttttgatgacAA
AAATGCGTGTACATATTTTTTCcttgataatattttgaaaaacgaaaata
tttttttgactttaaaattttctttttaattaaatttattGGTTATAATT
ACCACAAAGCAAACCAAAGATACATTCAAATCAGATAATTTTGACGTGTG
TTTTATCATTTCTCGTTTGATTTAGGCTTTaacatttca Run BLAST on NCBI protein sequence of TCONS_00066831-protein >TCONS_00066831-protein ID=TCONS_00066831-protein|Name=TCONS_00066831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MVQLITKRQNEYTSEVPEKRSKSLSRMTKSKSTSDIKQRAQSLERRGKLL
RKKSSKELLKDVDRSSCECGGATNQNIQSSKDFSTKKTLKQTKHFNSGKL
FDAVLDGDYSKVRRCIIEDQLEVNEYSPEGTTVLHLASAAGDVDIVELLI
ECGAVIDCKDVNGRTALEYAVLYGNFDSATTLIENGADSKCIKNGFH Run BLAST on NCBI transcript from alignment at scaffold_46:435026..436064 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066831 ID=TCONS_00066831|Name=TCONS_00066831|organism=Clytia hemisphaerica|type=transcript|length=1039bp|location=Sequence derived from alignment at scaffold_46:435026..436064 (Clytia hemisphaerica)
tgaaatgttAAAGCCTAAATCAAACGAGAAATGATAAAACACACGTCAAA
ATTATCTGATTTGAATGTATCTTTGGTTTGCTTTGTGGTAATTATAACCa
ataaatttaattaaaaagaaaattttaaagtcaaaaaaatattttcgttt
ttcaaaatattatcaagGAAAAAATATGTACACGCATTTTTgtcatcaaa
aataaatattactTCTATTAAAGGTGCATCAGAATAAAAGTTTAATGGAa
tccatttttaatgcatttggAATCGGCGCCGTTTTCAATAAGCGTGGTTG
CACTGTCAAAATTACCATAAAGTACTGCATATTCAAGGGCAGTGCGTCCA
TTCACGTCTTTACAATCAATGACTGCTCCACATTCGATTAAAAGTTCAAC
AATGTCTACATCACCGGCAGCCGAAGCGAGATGAAGAACGGTGGTTCCTT
CAGGACTGTATTCGTTAACTTCTAGTTGATCTTCGATGATGCATCGGCGA
ACCTTGGAATAATCTCCATCTAAAACTGCATCAAAGAGTTTACCACTGTT
AAAATGTTTcgtttgttttaaagttttcttgGTAGAAAAGTCTTTGGAAG
ATTGAATATTTTGGTTGGTAGCACCACCACATTCGCACGAACTACGATCA
ACATCTTTTAACAATTCTTTACTTGATTTCTTTCGAAGTAATTTTCCTCT
TCTTTCCAGCGATTGAGCTCGTTGTTTGATATCGCTTGTTGATTTGCTTT
TTGTCATCCTTGAGAGTGACTTTGATCGTTTCTCTGGCACCTCACTGGTG
TATTCGTTCTGTCGTTTGGTTATTAATTGAACCATAATGTGTCTTGTTAA
TTGTGTTGTAATTACCGTACCTTGCGTTATACGTCTTGCTTGTGAAGTTT
TGCGACTGTCTTTTAAAGAGCGTTAAGCATTCGCATTTTTATATAGCAAA
GAAGCCCATGACAcatctttcaaaacaaaaggattgaccaatcaaaacat
AGGATTACAATAAACATTATTTTCCTTTCTAAAAAAGcc Coding sequence (CDS) from alignment at scaffold_46:435026..436064 >TCONS_00066831 ID=TCONS_00066831|Name=TCONS_00066831|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_46:435026..436064 (Clytia hemisphaerica)
TTAATGGAatccatttttaatgcatttggAATCGGCGCCGTTTTCAATAA
GCGTGGTTGCACTGTCAAAATTACCATAAAGTACTGCATATTCAAGGGCA
GTGCGTCCATTCACGTCTTTACAATCAATGACTGCTCCACATTCGATTAA
AAGTTCAACAATGTCTACATCACCGGCAGCCGAAGCGAGATGAAGAACGG
TGGTTCCTTCAGGACTGTATTCGTTAACTTCTAGTTGATCTTCGATGATG
CATCGGCGAACCTTGGAATAATCTCCATCTAAAACTGCATCAAAGAGTTT
ACCACTGTTAAAATGTTTcgtttgttttaaagttttcttgGTAGAAAAGT
CTTTGGAAGATTGAATATTTTGGTTGGTAGCACCACCACATTCGCACGAA
CTACGATCAACATCTTTTAACAATTCTTTACTTGATTTCTTTCGAAGTAA
TTTTCCTCTTCTTTCCAGCGATTGAGCTCGTTGTTTGATATCGCTTGTTG
ATTTGCTTTTTGTCATCCTTGAGAGTGACTTTGATCGTTTCTCTGGCACC
TCACTGGTGTATTCGTTCTGTCGTTTGGTTATTAATTGAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066831-exon-scaffold_46-1491911889:435026..436064 | TCONS_00066831-exon-scaffold_46-1491911889:435026..436064 | Clytia hemisphaerica | exon |
| TCONS_00066831-exon-scaffold_46-1510915933:435026..436064 | TCONS_00066831-exon-scaffold_46-1510915933:435026..436064 | Clytia hemisphaerica | exon |
| TCONS_00066831-exon-scaffold_46-1575043694:435026..436064 | TCONS_00066831-exon-scaffold_46-1575043694:435026..436064 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:435026..436064 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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