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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066837 ID=TCONS_00066837|Name=TCONS_00066837|organism=Clytia hemisphaerica|type=transcript|length=405bp
ACCGCAAGGAAGATGCCACCTTGGAATTAACAAAGGTAGCCAAAGTGTTG
TATGCAGTTGATAGAGGAGACAATTTAAAGAATATGCGCATAGATGACCT
AGGAACAGAACATAATTTAGAAGAACTCAAAGAAACCCGGATCAAGCAAA
AGAGAGGTAAAAAACGGAAAGTCGAAGCACGGAATGACGGTCCCTCAGTC
TTAGTTGAAAAGGCCGAAGCACGGAATGACGGTCCCTCAGTCTCACTTGA
AAAGAACAAACGAAAACGAACACGGATTAATTACAAAAAATGGACAGCCG
AAGAAGAAGCTTAGATAAGAAAGTGGTTCAAAATCCCAATGATGGCAAAT
AGAGCGCCGTTGCAATACGAAGTCTTAACGGCACAAAAGAAATGTCCCTT
GCTAN Run BLAST on NCBI protein sequence of TCONS_00066837-protein >TCONS_00066837-protein ID=TCONS_00066837-protein|Name=TCONS_00066837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
RKEDATLELTKVAKVLYAVDRGDNLKNMRIDDLGTEHNLEELKETRIKQK
RGKKRKVEARNDGPSVLVEKAEARNDGPSVSLEKNKRKRTRINYKKWTAE
EEA Run BLAST on NCBI transcript from alignment at scaffold_460:32701..33885- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066837 ID=TCONS_00066837|Name=TCONS_00066837|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at scaffold_460:32701..33885- (Clytia hemisphaerica)
ACCGCAAGGAAGATGCCACCTTGGAATTAACAAAGGTAGCCAAAGTGTTG
TATGCAGTTGATAGAGGAGACAATTTAAAGAATATGCGCATAGATGACCT
AGGAACAGAACATAATTTAGAAGAACTCAAAGAAACCCGGATCAAGCAAA
AGAGAGGTATTGTAGATGTTTCAACTTCTATTAGAATTATCAGCGTAGAA
CTTTATAAAAAGTAAAAGTTCTTTGATACGTATTAGAAGAACATTTCATC
GTCGTAAAAACGCAATAAAACAATGTAAAAGATTGAGAAAGTTTTTGATT
TAATTTTTATAGATTGAAGAAATGAAAATGCTTGTTTTTTATGCAGGTAA
AAAACGGAAAGTCGAAGCACGGAATGACGGTCCCTCAGTCTTAGTTGAAA
AGGCCGAAGCACGGAATGACGGTCCCTCAGTCTCACTTGAAAAGGTATTT
TAGCGAAAACTTTTTATTACCACTCTTAAATATTCCATCTATATTAACCT
TTTAAATTAAAACAGGTTTAAGAGTGATTTTGAAATTGGCCAAAAGAAGA
ATGACACTAAGAATTCTGCCTTCTTATTTTTTCTTCAAGATCAATTTTTT
GGGGAAAATCATTCCTAAATAATATATACATAAACAGAGACCCTATAAAT
CTCATCTTCTCTTTCCGTGTTACATGCTTTTAATATTACTCATTTACAAT
TTTTAAGACTGAGGCTGATAAAAACTTGTAGGAATTATGTTAACTAGGAT
GATTTTTAAAAATATTCATTATTGAACTGAAAAACACTTTTGTCATGAAA
AAGTATACCGATTAGTAAATATATCCAGTGTGAAGACACCCTGAATTTTG
AATTCATTTAGCCTTAGTGGGACATCTCTTTGATTTTCTTTAATAGAACA
NGATCATTATTGAACTGAAAAACACTTTTGTCATGAAAAAGTATACCGAT
TAGTAAATATATCCAGTGTGAAGACACCCTGAATTTTGAATTCATTTAGC
CTTAGTGGGACATCTCTTTGATTTTCTTTAATAGAACAAACGAAAACGAA
CACGGATTAATTACAAAAAATGGACAGCCGAAGAAGAAGCTTAGATAAGA
AAGTGGTTCAAAATCCCAATGATGGCAAATAGAGCGCCGTTGCAATACGA
AGTCTTAACGGCACAAAAGAAATGTCCCTTGCTAN Coding sequence (CDS) from alignment at scaffold_460:32701..33885- >TCONS_00066837 ID=TCONS_00066837|Name=TCONS_00066837|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_460:32701..33885- (Clytia hemisphaerica)
AACAAACGAAAACGAACACGGATTAATTACAAAAAATGGACAGCCGAAGA
AGAAGCTTAGGTAAAAAACGGAAAGTCGAAGCACGGAATGACGGTCCCTC
AGTCTTAGTTGAAAAGGCCGAAGCACGGAATGACGGTCCCTCAGTCTCAC
TTGAAAAGCGCAAGGAAGATGCCACCTTGGAATTAACAAAGGTAGCCAAA
GTGTTGTATGCAGTTGATAGAGGAGACAATTTAAAGAATATGCGCATAGA
TGACCTAGGAACAGAACATAATTTAGAAGAACTCAAAGAAACCCGGATCA
AGCAAAAGAGAGAACAAACGAAAACGAACACGGATTAATTACAAAAAATG
GACAGCCGAAGAAGAAGCTTAGGTAAAAAACGGAAAGTCGAAGCACGGAA
TGACGGTCCCTCAGTCTTAGTTGAAAAGGCCGAAGCACGGAATGACGGTC
CCTCAGTCTCACTTGAAAAGCGCAAGGAAGATGCCACCTTGGAATTAACA
AAGGTAGCCAAAGTGTTGTATGCAGTTGATAGAGGAGACAATTTAAAGAA
TATGCGCATAGATGACCTAGGAACAGAACATAATTTAGAAGAACTCAAAG
AAACCCGGATCAAGCAAAAGAGAGAACAAACGAAAACGAACACGGATTAA
TTACAAAAAATGGACAGCCGAAGAAGAAGCTTAGGTAAAAAACGGAAAGT
CGAAGCACGGAATGACGGTCCCTCAGTCTTAGTTGAAAAGGCCGAAGCAC
GGAATGACGGTCCCTCAGTCTCACTTGAAAAGCGCAAGGAAGATGCCACC
TTGGAATTAACAAAGGTAGCCAAAGTGTTGTATGCAGTTGATAGAGGAGA
CAATTTAAAGAATATGCGCATAGATGACCTAGGAACAGAACATAATTTAG
AAGAACTCAAAGAAACCCGGATCAAGCAAAAGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066837-exon-scaffold_460-1575043694:33730..33885 | TCONS_00066837-exon-scaffold_460-1575043694:33730..33885 | Clytia hemisphaerica | exon |
| TCONS_00066837-exon-scaffold_460-1575043694:33442..33539 | TCONS_00066837-exon-scaffold_460-1575043694:33442..33539 | Clytia hemisphaerica | exon |
| TCONS_00066837-exon-scaffold_460-1575043694:32701..32851 | TCONS_00066837-exon-scaffold_460-1575043694:32701..32851 | Clytia hemisphaerica | exon |
| TCONS_00066837-exon-scaffold_460-1510915933:33730..33885 | TCONS_00066837-exon-scaffold_460-1510915933:33730..33885 | Clytia hemisphaerica | exon |
| TCONS_00066837-exon-scaffold_460-1510915933:33442..33539 | TCONS_00066837-exon-scaffold_460-1510915933:33442..33539 | Clytia hemisphaerica | exon |
| TCONS_00066837-exon-scaffold_460-1510915933:32701..32851 | TCONS_00066837-exon-scaffold_460-1510915933:32701..32851 | Clytia hemisphaerica | exon |
| TCONS_00066837-exon-scaffold_460-1491911889:33730..33885 | TCONS_00066837-exon-scaffold_460-1491911889:33730..33885 | Clytia hemisphaerica | exon |
| TCONS_00066837-exon-scaffold_460-1491911889:33442..33539 | TCONS_00066837-exon-scaffold_460-1491911889:33442..33539 | Clytia hemisphaerica | exon |
| TCONS_00066837-exon-scaffold_460-1491911889:32701..32851 | TCONS_00066837-exon-scaffold_460-1491911889:32701..32851 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_460 | supercontig | scaffold_460:32701..33885 - |
Blast
The following BLAST results are available for this feature:
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