TCONS_00066839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066839
Unique NameTCONS_00066839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066839 ID=TCONS_00066839|Name=TCONS_00066839|organism=Clytia hemisphaerica|type=transcript|length=322bp
TGGGATTGAGTAAGTGTCCGATAATCAAGCCGAGCTATGAAGTACTAAAA
AGGTGATATATGATTAATTTTTCTGGCCAGTTCCTAATGATTTATTAGGA
TTCAAACTTTTCAGTTCCTCTCTGACCATGTCAATAGTTAAATCTTAGAT
TTGTTATCTATTTGTTGTATGCTTGCATAGtatcttacattttattttac
ttatacagtttcttcaaaaaagttttaaaagggAACATTTATTTATAATA
GTTATGCTTTACGTTTACATTTCTACTtgtttattgaaacatgaaaaaTC
GTCCTGTCCATGGGAACGtcga
Run BLAST on NCBI

transcript from alignment at scaffold_460:12175..12496

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066839 ID=TCONS_00066839|Name=TCONS_00066839|organism=Clytia hemisphaerica|type=transcript|length=322bp|location=Sequence derived from alignment at scaffold_460:12175..12496 (Clytia hemisphaerica)
tcgaCGTTCCCATGGACAGGACGAtttttcatgtttcaataaacaAGTAG
AAATGTAAACGTAAAGCATAACTATTATAAATAAATGTTcccttttaaaa
cttttttgaagaaactgtataagtaaaataaaatgtaagataCTATGCAA
GCATACAACAAATAGATAACAAATCTAAGATTTAACTATTGACATGGTCA
GAGAGGAACTGAAAAGTTTGAATCCTAATAAATCATTAGGAACTGGCCAG
AAAAATTAATCATATATCACCTTTTTAGTACTTCATAGCTCGGCTTGATT
ATCGGACACTTACTCAATCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041800XLOC_041800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066839-exon-scaffold_460-1491911889:12175..12496TCONS_00066839-exon-scaffold_460-1491911889:12175..12496Clytia hemisphaericaexon
TCONS_00066839-exon-scaffold_460-1510915933:12175..12496TCONS_00066839-exon-scaffold_460-1510915933:12175..12496Clytia hemisphaericaexon
TCONS_00066839-exon-scaffold_460-1575043694:12175..12496TCONS_00066839-exon-scaffold_460-1575043694:12175..12496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_460supercontigscaffold_460:12175..12496 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.313933	0.306134	0	0	0	0	0.807221	0	1.85182	0.655364	0	1.46354	0.417574	0	0.713046	1.91302	0	0.483105	0.667435	0.698423	2.73175	3.55321	0.359949	1.63623	0	0.300814	0.430464	1.37821	1.39376	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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