TCONS_00066844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066844
Unique NameTCONS_00066844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066844 ID=TCONS_00066844|Name=TCONS_00066844|organism=Clytia hemisphaerica|type=transcript|length=814bp
CTGCAATGAAGCTACATGAAAATATGCTTACTTGGAGATGCTCAAAATGT
ACAAACAGGAGATCAGTCAAGGCAGTTTCATTTTTCGCAGAAAGTAGAAC
CGATCTTTGAACCTGGATGAAAGTATTGAACGACTGGTGCGAAGAAACAA
CTGTAAAGGAAATTGCCACCGCATACGATTTGTCAATGGGAACAGCTAGT
GGTCATCTAACTCACTTTCGAGAACTCTATCAATCTTGGTTAGTTGACAT
CGAACCACAGTTTTTGGGTGGAGAAGGAAAGCATGTTTTGATAAAGAAGT
TAAAGAATTGTTCAGGAGATTGCAACATCCTGCTAATGATCGAAGACCAT
TCGAGGATTGGTTTGCTTCTGCATAATCGGGAAGAAACATACGAGCATAT
CCTTCAAGTACCAGTAAAGATGGGAACTTTCGTTTTTTCTGAAACAGTAA
TGCTTCTTCCAGCTGGATGCATGCAGTCACAGACAACAGAACTGTTTCAA
GGATCAAACGCTGAGGAAGCTACAAAACATGCTAAATCTTGGCTGGCAAA
AAGAAAGGGTATTCGTTGCTCTAAATCAGGCGGCTATATAAATGAATACA
ACTTTAGATTTTATATCAAAAGTGAATCAACTTTCAAAGATAGAATGATT
CAANCTTTAGATTTTATATCATAAGTGAATCAACTTTCAAAGATAGAATG
ATTCAAGTCTTCAAAGAATTATACAGAAATCAATTTGAGTAAAATTTTGA
TACTGTAACGTTTCAAACGTTTTGattgatccaaaaaatatcccgaaaaa
aaaacataaataca
Run BLAST on NCBI

protein sequence of TCONS_00066844-protein

>TCONS_00066844-protein ID=TCONS_00066844-protein|Name=TCONS_00066844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MKVLNDWCEETTVKEIATAYDLSMGTASGHLTHFRELYQSWLVDIEPQFL
GGEGKHVLIKKLKNCSGDCNILLMIEDHSRIGLLLHNREETYEHILQVPV
KMGTFVFSETVMLLPAGCMQSQTTELFQGSNAEEATKHAKSWLAKRKGIR
CSKSGGYINEYNFRFYIKSESTFKDRMIQXLDFIS
Run BLAST on NCBI

transcript from alignment at scaffold_461:20979..22767+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066844 ID=TCONS_00066844|Name=TCONS_00066844|organism=Clytia hemisphaerica|type=transcript|length=1789bp|location=Sequence derived from alignment at scaffold_461:20979..22767+ (Clytia hemisphaerica)
CTGCAATGAAGCTACATGAAAATATGCTTACTTGGTAAGAAGACTTTTCT
TACAAATTTTATTCAATGATGAAGAAAAACATTCGTAATCATTGATCAGT
AATCAAAGTGGATTTCCATAATTTCAAGTAAAAAATTGGGCGACGGTTAT
TCCTTAAGGACCTTAAGGAAAGGAAAGTTTTTTGACAAGGATCTAGTCTC
TCCCCGGGGCGGTACTTAGGCAAGGAAGGGTGCAGGTATGTGAGAACAGT
AAGGGTAACTTTTTCAGACCTCAAAAAAAATCTCTCGAAGGCTGAAATCT
GTTCAGCAGGATCCAAAAATTACGAAAATCAGATTCTTCGatcatgattt
tcgaaaaattggacCATGATTTTAAGAAAGATCTACTTACACTTCACGAA
ACATTGACTTTAATTGAAGATACAAATTTTTAATAAAGTTCAGATTTCAT
TGTAACAGATCTATTTTTCTAACGAGCTACAATTTTTAATTACcagcttt
ttttataaattgcAAAAACCAGGAATTTGCCCATCgacaatttttttgat
attcttaCTCTGCTCTTAAATTTACAGGAGATGCTCAAAATGTACAAACA
GGAGATCAGTCAAGGCAGTTTCATTTTTCGCAGAAAGTAGAACCGATCTT
TGAACCTGGATGAAAGTATTGAACGACTGGTGCGAAGAAACAACTGTAAA
GGTAAaagaaacttttattttttacgtTATTTTGCTCACGTACCTTATTA
GGTGGATAATCGAAACTACCTTTCGCGAAAAAGActgaaattcgcgaaaa
ttcaTCCACCGATTCTTGTCccaattaagggctctgaccatagtcagaaa
atcgGTTATGTGATTTGAAGATATATATGTTACGgctattttatttcatt
taaattcaattACTTTATATATCTTTCTCTGAAGGAAATTGCCACCGCAT
ACGATTTGTCAATGGGAACAGCTAGTGGTCATCTAACTCACTTTCGAGAA
CTCTATCAATCTTGGTTAGTTGACATCGAACCACAGTTTTTGGGTGGAGA
AGGAAAGCATGTTTTGATAAAGAAGTTAAAGgtaaagaatttcatttttg
ttgcTTATTCTTACAACATGAGATATATTCATTTTAAAAACACCGTTATA
TTCGCTACATAAAATAAAGGGTTTTATGCTATGTGGATAAAAATGCTTAT
TCACGCAAAATGGTTCTAATTTTACGGTTATCATCTTTGTTTATTCTATA
ATTAGTTAACAGAAAAATTTTGTTCTTTAGAATTGTTCAGGAGATTGCAA
CATCCTGCTAATGATCGAAGACCATTCGAGGATTGGTTTGCTTCTGCATA
ATCGGGAAGAAACATACGAGCATATCCTTCAAGTACCAGTAAAGATGGGA
ACTTTCGTTTTTTCTGAAACAGTAATGCTTCTTCCAGCTGGATGCATGCA
GTCACAGACAACAGAACTGTTTCAAGGATCAAACGCTGAGGAAGCTACAA
AACATGCTAAATCTTGGCTGGCAAAAAGAAAGGGTATTCGTTGCTCTAAA
TCAGGCGGCTATATAAATGAATACAACTTTAGATTTTATATCAAAAGTGA
ATCAACTTTCAAAGATAGAATGATTCAANCTTTAGATTTTATATCATAAG
TGAATCAACTTTCAAAGATAGAATGATTCAAGTCTTCAAAGAATTATACA
GAAATCAATTTGAGTAAAATTTTGATACTGTAACGTTTCAAACGTTTTGa
ttgatccaaaaaatatcccgaaaaaaaaacataaataca

Coding sequence (CDS) from alignment at scaffold_461:20979..22767+

>TCONS_00066844 ID=TCONS_00066844|Name=TCONS_00066844|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_461:20979..22767+ (Clytia hemisphaerica)
ATGAAAGTATTGAACGACTGGTGCGAAGAAACAACTGTAAAGGAAATTGC
CACCGCATACGATTTGTCAATGGGAACAGCTAGTGGTCATCTAACTCACT
TTCGAGAACTCTATCAATCTTGGTTAGTTGACATCGAACCACAGTTTTTG
GGTGGAGAAGGAAAGCATGTTTTGATAAAGAAGTTAAAGAATTGTTCAGG
AGATTGCAACATCCTGCTAATGATCGAAGACCATTCGAGGATTGGTTTGC
TTCTGCATAATCGGGAAGAAACATACGAGCATATCCTTCAAGTACCAGTA
AAGATGGGAACTTTCGTTTTTTCTGAAACAGTAATGCTTCTTCCAGCTGG
ATGCATGCAGTCACAGACAACAGAACTGTTTCAAGGATCAAACGCTGAGG
AAGCTACAAAACATGCTAAATCTTGGCTGGCAAAAAGAAAGGGTATTCGT
TGCTCTAAATCAGGCGGCTATATAAATGAATACAACTTTAGATTTTATAT
CAAAAGTGAATCAACTTTCAAAGATAGAATGATTCAANCTTTAGATTTTA
TATCATAAATGAAAGTATTGAACGACTGGTGCGAAGAAACAACTGTAAAG
GAAATTGCCACCGCATACGATTTGTCAATGGGAACAGCTAGTGGTCATCT
AACTCACTTTCGAGAACTCTATCAATCTTGGTTAGTTGACATCGAACCAC
AGTTTTTGGGTGGAGAAGGAAAGCATGTTTTGATAAAGAAGTTAAAGAAT
TGTTCAGGAGATTGCAACATCCTGCTAATGATCGAAGACCATTCGAGGAT
TGGTTTGCTTCTGCATAATCGGGAAGAAACATACGAGCATATCCTTCAAG
TACCAGTAAAGATGGGAACTTTCGTTTTTTCTGAAACAGTAATGCTTCTT
CCAGCTGGATGCATGCAGTCACAGACAACAGAACTGTTTCAAGGATCAAA
CGCTGAGGAAGCTACAAAACATGCTAAATCTTGGCTGGCAAAAAGAAAGG
GTATTCGTTGCTCTAAATCAGGCGGCTATATAAATGAATACAACTTTAGA
TTTTATATCAAAAGTGAATCAACTTTCAAAGATAGAATGATTCAANCTTT
AGATTTTATATCATAAATGAAAGTATTGAACGACTGGTGCGAAGAAACAA
CTGTAAAGGAAATTGCCACCGCATACGATTTGTCAATGGGAACAGCTAGT
GGTCATCTAACTCACTTTCGAGAACTCTATCAATCTTGGTTAGTTGACAT
CGAACCACAGTTTTTGGGTGGAGAAGGAAAGCATGTTTTGATAAAGAAGT
TAAAGAATTGTTCAGGAGATTGCAACATCCTGCTAATGATCGAAGACCAT
TCGAGGATTGGTTTGCTTCTGCATAATCGGGAAGAAACATACGAGCATAT
CCTTCAAGTACCAGTAAAGATGGGAACTTTCGTTTTTTCTGAAACAGTAA
TGCTTCTTCCAGCTGGATGCATGCAGTCACAGACAACAGAACTGTTTCAA
GGATCAAACGCTGAGGAAGCTACAAAACATGCTAAATCTTGGCTGGCAAA
AAGAAAGGGTATTCGTTGCTCTAAATCAGGCGGCTATATAAATGAATACA
ACTTTAGATTTTATATCAAAAGTGAATCAACTTTCAAAGATAGAATGATT
CAANCTTTAGATTTTATATCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041805XLOC_041805Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066844-proteinTCONS_00066844-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066844-exon-scaffold_461-1491911889:20979..21012TCONS_00066844-exon-scaffold_461-1491911889:20979..21012Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1510915933:20979..21012TCONS_00066844-exon-scaffold_461-1510915933:20979..21012Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1575043694:20979..21012TCONS_00066844-exon-scaffold_461-1575043694:20979..21012Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1491911889:21556..21679TCONS_00066844-exon-scaffold_461-1491911889:21556..21679Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1510915933:21556..21679TCONS_00066844-exon-scaffold_461-1510915933:21556..21679Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1575043694:21556..21679TCONS_00066844-exon-scaffold_461-1575043694:21556..21679Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1491911889:21913..22059TCONS_00066844-exon-scaffold_461-1491911889:21913..22059Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1510915933:21913..22059TCONS_00066844-exon-scaffold_461-1510915933:21913..22059Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1575043694:21913..22059TCONS_00066844-exon-scaffold_461-1575043694:21913..22059Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1491911889:22259..22767TCONS_00066844-exon-scaffold_461-1491911889:22259..22767Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1510915933:22259..22767TCONS_00066844-exon-scaffold_461-1510915933:22259..22767Clytia hemisphaericaexon
TCONS_00066844-exon-scaffold_461-1575043694:22259..22767TCONS_00066844-exon-scaffold_461-1575043694:22259..22767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_461supercontigscaffold_461:20979..22767 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.410486	0.228736	0.0663962	0.129917	0.632644	0.374943	0.678529	1.19988	1.2848	0.673301	1.6041	1.36691	0.585003	0.648034	0.0332982	0.393075	1.18858	1.71458	0.872712	0.717538	3.74202	4.729	1.81539	3.11751	0.377761	0.674285	1.52776	0.772325	0.19526	0.530505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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