TCONS_00066850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066850
Unique NameTCONS_00066850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066850 ID=TCONS_00066850|Name=TCONS_00066850|organism=Clytia hemisphaerica|type=transcript|length=750bp
catgatcagtttagttcgtagccagaaccccacccatgatcagtttagtt
cgtagccagaaccccacccatgatcagttcagttcgtagccagaacccca
cacaggatcagttcagttcgtagccagaacacTATCCAAGATTAGTTcgg
ttcgtagccagaaccccacccatgatcagttcagttcgtagccagaaccc
cacccatgatcagttcatttcgtagccagaaccccacacaggatcagttc
agttcgtagccagaaccccaacCTAGATCAAGTCAGACCGTACAGGACCC
CACCCATGATTAGTTCAGTTCGTAGTCAGGACTggaatgaaagaaatttt
acaGGCATGGAGGCGCGAAATGGTAAAagaattggcgtgatcgtgaaatg
gAATTTTTCAAGCGTGACGGCGTGAAATCTGAAAGAAAATTGGCGTTATG
GCGCGAATTTTAGGTCCGCTGGGAGGGGGGGCTCTCATTTTGATGTCTAG
ATTTCTAAAGTAGAATATTCTTGCgaagtgataaaaaaagaccGTGAAAA
ATGCCTTGtcttttaaacaaatttttgcaCGTTGATCGTTATTTaccttt
tatttgatttgaagaaAGTCTTTGACAAAAATGAAGACCCATCACAGCAA
AGATCCGATCTGAAAATTACCGTATCCCCGAAAAAAATCACGCCTTTAGA
ATAAGACAATATTACAGTATGAAAAGAATCCGGCTGATTATCGGGGCTNN
Run BLAST on NCBI

transcript from alignment at scaffold_461:6981..7730

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066850 ID=TCONS_00066850|Name=TCONS_00066850|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at scaffold_461:6981..7730 (Clytia hemisphaerica)
NNAGCCCCGATAATCAGCCGGATTCTTTTCATACTGTAATATTGTCTTAT
TCTAAAGGCGTGATTTTTTTCGGGGATACGGTAATTTTCAGATCGGATCT
TTGCTGTGATGGGTCTTCATTTTTGTCAAAGACTttcttcaaatcaaata
aaaggtAAATAACGATCAACGtgcaaaaatttgtttaaaagaCAAGGCAT
TTTTCACggtctttttttatcacttcGCAAGAATATTCTACTTTAGAAAT
CTAGACATCAAAATGAGAGCCCCCCCTCCCAGCGGACCTAAAATTCGCGC
CATAACGCCAATTTTCTTTCAGATTTCACGCCGTCACGCTTGAAAAATTc
catttcacgatcacgccaattctTTTACCATTTCGCGCCTCCATGCCtgt
aaaatttctttcattccAGTCCTGACTACGAACTGAACTAATCATGGGTG
GGGTCCTGTACGGTCTGACTTGATCTAGgttggggttctggctacgaact
gaactgatcctgtgtggggttctggctacgaaatgaactgatcatgggtg
gggttctggctacgaactgaactgatcatgggtggggttctggctacgaa
ccgAACTAATCTTGGATAgtgttctggctacgaactgaactgatcctgtg
tggggttctggctacgaactgaactgatcatgggtggggttctggctacg
aactaaactgatcatgggtggggttctggctacgaactaaactgatcatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041808XLOC_041808Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066850-exon-scaffold_461-1491911889:6981..7730TCONS_00066850-exon-scaffold_461-1491911889:6981..7730Clytia hemisphaericaexon
TCONS_00066850-exon-scaffold_461-1510915933:6981..7730TCONS_00066850-exon-scaffold_461-1510915933:6981..7730Clytia hemisphaericaexon
TCONS_00066850-exon-scaffold_461-1575043694:6981..7730TCONS_00066850-exon-scaffold_461-1575043694:6981..7730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_461supercontigscaffold_461:6981..7730 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.196734	0.255796	0.0742509	0	0.530614	0.279532	0.758799	1.26289	0.38683	1.0952	1.12947	0.305722	0.21807	0.13588	0.0744748	0	0	0	0.487977	0.510632	0.443832	0.185559	0.110322	0.205077	0.281633	0.691215	0.179841	0.287897	0.0727866	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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