TCONS_00066860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066860
Unique NameTCONS_00066860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066860 ID=TCONS_00066860|Name=TCONS_00066860|organism=Clytia hemisphaerica|type=transcript|length=947bp
ATTTATCCTTGTCTATTGTTAGACATAAcatcaataataaaaaaaacgat
tttttaatGGGAGTGATCGAGCTTGTGTAAAAGATACACGAATTAATTCG
CTGTCTTATATTATACGTTTATGTTGTTTTAGAAGTGTGTTTTGTGTGAT
TGAATTTTGGAATTCTTTTGCTTTGATCAGAAGGGTTGTGACATTTGAGG
GCGACGCACAGAAGttacattttgattttcttggacTTTCtatttcacca
attttcatACACAATGAGTTACGAAGACATGGAAGAATACCGTGATACCT
TCTCACTTTTCGACAAACAAGGAGATGGAAAAATTGAATGTGGCGATATT
GGAGATATCTTACGCGCTCTCGGATGCAACCCAACTCAAGCCGAAGTCAA
AAAAATCGTCGCCGACATCGACTCCTCAGGACAAAAGCGAATCACCTTTG
AAGAATTTATTCCAATCTTTCACACGATGAGCAAAAAGAAAAGCTCGTGT
GGTTTCGAAGCCTTCTCCGAAGGATTCAGGATTTTTGACAGAGACAACAA
CGGTATGGTCAGTGTGGCCGAAGTCAGACATTTATTGACCAGTTTAGgtg
aaaaattaaattccagTGATGTCGATGCTTTAGTACAAGGACTTGAAGAT
TCAAGTGGCATGATCAACTACGAAGAATTTGTTCGTGGAGTAATGAACGC
TTAAACACactacaaacaaacaaacatcaGAACTGCgtccaaaaacaaaa
acaacacaaCATCACGCAATCACCATAACAACTGATGATACGtcatcaat
ttcaaaatttagggTTCTTTTTGCGAAAAAAGCAAGAAAGTTGGGATgag
ttttaaatttcaaatttaataattctatattattttttaaaacgaaatct
tacaatatttttgtttgaaatttttgtaccATATTAAACTTGGGGag
Run BLAST on NCBI

transcript from alignment at scaffold_462:62614..68738+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066860 ID=TCONS_00066860|Name=TCONS_00066860|organism=Clytia hemisphaerica|type=transcript|length=6125bp|location=Sequence derived from alignment at scaffold_462:62614..68738+ (Clytia hemisphaerica)
ATTTATCCTTGTCTATTGTTAGACATAAcatcaataataaaaaaaacgat
tttttaatGGGAGTGATCGAGCTTGTGTAAAAGATACACGAATTAATTCG
CTGTCTTATATTATACGTTTATGTTGTTTTAGAAGTGTGTTTTGTGTGAT
TGAATTTTGGAATTCTTTTGCTTTGATCAGAAGGGTTGTGACATTTGAGG
GCGACGCACAGAAGttacattttgattttcttggacTTTCtatttcacca
attttcatACACAATGAGTTACGAAGACATGGAAGgtcagccattttgaa
ttttcatttttttctaaagtttatgATATTATGAGATAACTCTGCGTGAT
GATTTTATTAACTCACAGCAGTTTAATAATATTATTATTCCTGTTTAGAG
TTTATGCTTTCCACTCGTGAGAAATTGTTAGATTTTTATTATGTTACCGA
AGATAGTCTTTGGTTAAAGGGTGGGATTGCTTTGTCCTTAATTTCCTTTC
CTAAATAGACCAATCAATAATGTTTGTACAATCATTTGAAGGTGTTGATC
ATTTACCTaaatcatttgatttgaaaacctTGACTCGAccctcttctctt
tatgtcgaCAAGTTGGATTAGATCATCGTGGCATTTTATCATTTGAGAGA
CTTATAGTTTATTAGCAGACAATTAGAATTAAAATGGTAATTTTTATCTA
TAAAATGCTTTCTGATGTTGGATAATAAGAGCTGCTTTGTCTGTTCTATG
ACTTCTATCGTTGTGTTAAAATAGATCTTATTTTGTGAGCGATTTAAATC
TTTTAGTGAGAAGTCTTGTTCCGCCTTTTCTCGACATATCTCTGATTTTT
CTCCTCACTAGAACATGGATTTTATTTCAACCCTCACTTTTTCTGATTCT
CACTCAAGTCCGTAAGGCATTTTTTTGTTATCTTTCGGTTGTAGTCTAGC
AATGTTAACGATGTGACAACTACAAGAGAAAGAAATTTGATCTTTGTGTC
AAAAACTTCTTACACGCTTTTCACGGTTTTCCTCCATTTTTTAACGCAGT
TCAACATTTGATAGATTGGAAATAATggtcaaaagaaattttaaaacatc
GCTGTCTCACCACCCATGTCTAAATcatttttgagacaggggtgaagtTA
AGCAAGATTTCTAAGTATTGACTAAATGACATTGTGCAAAAGTTTAGCTA
TCCTTATTTCTGGTGCCAAACTTTCTAGGCAATCCATATAAAAACTGcag
tatattatttttttgcattttcaaacAAACTATAGTTTATTAATTTGCCA
TAATTGAGGTTTACTTGACACAGGGGTGACTCGTGGAGTTGAATTTCATG
ACCAACAAAGGAACTTTCATTGAAATAATACAcgttttaataagaacaaa
ctatataagaacataaggcttcgatggccaaaatgttaagaaccatgttt
gaaacacttttttttttaagaaaaatgggcaaatatacttacaaaatggt
taaaataagaTCATGTTAGGaacttttttaggcttaaaacccaaggcttc
aaaaattttggatgttcttataaaaaagaacgtGTACATTTTTATCGAAG
TTTCTTTGACCAATCTAGCAGATATTGAACTGTATTAAAAATGTTGGAGA
ACCTTTAAAATATTCTTCCTTTTCCCTTTTGAAATCTTCAGGCAGAAGAA
AGCGAAGATCAAATGTGGGGTAAGATTTCTTGTAAATATTTGTGAAGTAT
GATTGGTCTAATGTAGGGAAGGAAATTGGGATAAATAGGATGGCAATTTT
AAGCCCTGTTTTTAATAGTAGTTACAGTAATGGATTATCTTTCCAAAGTC
GAATAACTTATTTTATCAGTGGTAAAATAACACCCCCTAATTTTAATCAT
AATAATATTTATTACttacaatttttataaattaaaaCATGTTCATGGCC
CTTGTAGATTTATACTTGTTCAATTTTTTGTACACCGTCGAAATATTTAT
CTGCTTAAAGAATCTATGAAATGGTTTTATTGGTTAACACGTTGGTAACT
TTTTATGTAAGCCCtttgaataataaaatttacgtgctttttttgtgaat
tatTTTGTTACGTGTATGTTATCTCACAAACCATTTTAATTTAACACTAA
ATCGATTTATGCAAAAATTATAGTAATTTTATTGCaccaattcaaaaaat
tcatgatagcTTGACCTCACTTAAAATCAACGAGCCATTAGTCGGTCACT
cctctttttgaaaaacaacctttccattgCAAAGATTCGCAGAACTTTTA
AATCCTTTGAATGTTTAACGAAGATAATTTTCATCGAGTGTCCTAAACAC
ATGGTCTGCTAAATACATTTTGAAtgcgcaaaaaaaaacttttttatcat
CAAAGTATTTTATGCAAGCCTCCTAACATTCAAAACATTGTCACTCCCCT
TTCTTAattttacaaatattatttCCGCCATCTTTAATATCTCGTCATTA
GGAAATCATTAACAGATCCTTTAATTTCCATAATTAACAAGAGAAGAGCA
TAACATTTTTCATGAATGATAATAATGACCAGAAAGCTCGGAAAGCTTAC
CTCCTTAATGTAGTATATGAAAAAACTTCCGCTgctttttgaaatgaaaa
agctTTTTCATTCCTCACCCTAGCATGAGAACTTGAGCCTactccattga
gtttaaagggTTAAAAGGATTCTTCAAGGATTCTTTGGTAACCCAGTGAT
AGGTTTtatttcaatctggcgtttgtgtgaaagAGCTTTCTCACCTGGGA
CGGGTTTCGACCAATATTTCTCCAGATGAAATCTCAACGGGTCTCTTTTA
CAGGGGTGTTAAAGgtgagtgatatcgtttgcttactcatcaattttaat
tcacaagctttttcacattggattgacacagatattgagcaagattggtc
agaaagaagaaaagaaaaacatattttgcttatatcagcataatataaca
atagcaagacactgtccagatatgaaatatgtgtctggtatgaaacggga
acacttatgtaaaaataaaacctttaaataactGAATACAAAGACATCGA
AAAACCTATCAaaccattttgtttttatttccatTTTAGAATACCGTGAT
ACCTTCTCACTTTTCGACAAACAAGGAGATGGAAAAATTGAATGTGGCGA
TATTGGAGATATCTTACGCGCTCTCGGATGCAACCCAACTCAAGCCGAAG
TCAAAAAAATCGTCGCCGACATCGACTCCTCAGGTATCTTGAATTCGACA
TTTTAGCGGTAATTTTTAAGTATAGACCTATAACCTTATCTTCATAATTT
GGGATTGTATTTAAGTTTAACAGGACCagatgatacacgtttttttataa
gaatatacatTATAAGAATATCACAATCATGGAATTCGGCAacagaacct
aagaatgccatttttagagcatttgtcaattatccccaagtaactttcac
aaaaaatgccatttgtATTGTGTGTGCGTTAATATTTGTGGTCAGTATTT
TAACGTCATTACCCTCAGATTCAAAATCATAATTTAAGTTatttaataaa
ttttgattttatgaaaataaaatgaagtcaCTTCTGTGTTTACAATTTTT
GCAGAAATCATTCAGGGAGGATCAACGATAATTTAAGTTAAAAACTATTA
TTTGGTGTGTATTGCATGTTGTATTGCATGAGTCAACCAAAACGTTCTTG
CATTTGTGCTATTTGGATCAAGAATGACTTGTGATGCGAATGCTGCTAAG
AAATAATCCAAGCAATTGTAAAGCCAAATCttttaatcaataaaaagatt
aaaataCCATAGGGATTGATTGGAGGTCAAATATTTGATGGCTACCCCGG
TAAATAGAATGCGTAGTTACACAGTTTTTGTTTAGTCGTAGCCTAAAGGG
AACAACTATAACGATAGTGACTTAACTATGGACAAAACCTTACGACCTTA
CACATTATagtgacacccctgtctcgttgACATTGTGAGAATCGTTTAGT
TACTGGGGATGAATAAGCTAAATTCCAAACGAGTAGAATCTCTCACATTT
GATTCAAATACCAACTGTTTACCTTCACTCGTGATAGCTTAAAATCCAAG
TGGGATGCAATAcccttgaatttttttcctaaTAAGAATTCAATCAAATC
AACACTCAGGGCTCACTTACAATGAGTTTAGGCAGGGTGGTCAAAATATC
ACATATCGATGATCTATCGTTTTCCTCATAGGACAAAAGCGAATCACCTT
TGAAGAATTTATTCCAATCTTTCACACGATGAGCAAAAAGAAAAGCTCGT
GTGGTTTCGAAGCCTTCTCCGAAGGATTCAGGATTTTTGACAGAGACAAC
AACGGTATGGTCAGTGTGGCCGAAGTCAGACATTTATTGACCAGTTTAGG
TAAGTCGTCTCCTGCCCAGGCTCCTAAAATACCTTATTTGCTTTTCATAA
TAACTCACATTAGTTATAaacacttttttgcaaagtaaagATTTTattgc
gcctccttagactctatattcGTTGTCCCCCCAATTTCATGGCGTGACCC
TGTATTAGTTATAAATACACTTACAGATCAAGTTCTAGGGTGTTGTGGCT
GCTTCAGATGCTGTTTTAAATCAATAGCTGCTGCCTAAGTTTGGAAAATT
CAAATTCTGATGGTTTTCCTGTTTAAAAAGTGAATATGATTCTATCTGCA
AATTATAGACAAAGTAATTACTTTTGGAGTATCTACACTTCATTAATTGT
atcttttgattattttttcaggtgaaaaattaaattccagTGATGTCGAT
GCTTTAGTACAAGGACTTGAAGATTCAAGTGGCATGATCAACTACGAAGG
TTTGTACCCATACTCACAATTCAAAATTCATGCATGTTTCTTGGGGGAAA
GTCATGATGCTTGCTATATGAATCTATACTGATATCTTCCTCTTTAAGGC
CTTAGGGATGGAcgtaaaatctttatttttgaaaggtATTAAAAGGACAA
ATACTTTCCATAGAGAGTATTTTTAGGTATCCCTACAAAGGTCATGTCAC
gctcttgaaaaaatttccgcCAAAACTTGGTTGAGTTCTCAACGCAAGAA
ATTCTACTATGAAGTTTGATAAGGTTATCCCTTTAAAATGGCTTAAGATG
GGGATCAAAATTAATTTGCTTTATTCACAGATAGTCTAAACATTACTATT
CAAAAGAAAGATCTTATATCAAAATATTGATTCTAATAACAGATTTGACT
ATGCTAACTATGACAGtggtcaaaacttttgaaatcacaCAGTCAAAAAG
CTCTTAGTCAACAGAGAGGCGTTCAAGTTAAATTTTGTTAGGACCAATCT
TTCGCCGGTGGAAAAATCGACATTTAATTCAATGAATTCGTAGCTAATTT
AAATACACATCAAATACCACCTACCATATAAAGCCAAGGAGATCCCAGCC
AAATTGGAAAGTTCGTCCCCAATGATCAGATACTCTATTATTTTATTACC
CGGTGGATAAGTGGTTTCAACCCCATTGTGAAGGGGGCGGTAAAGTTATA
AAGTTGAATCCCGCCCGTCTTCAATTACTCCAATAGAAACTTAAAACCCC
TTCAAACAAATTGGGATTTCTAATTATACTGATATGTGGCTCATGGGCTT
GAAAAACTCTCGCCAGGACACCGAGACAGGATTGTAGAGAAagaaagtta
gatttttttctctcaatatTTCAAGtctgaaaattagatttttcaagaGA
CGGCAATTAGATGTGACTTAGTTGATAATAGGGTCTGCATTTTTCTCTTT
CAGAATTTGTTCGTGGAGTAATGAACGCTTAAACACactacaaacaaaca
aacatcaGAACTGCgtccaaaaacaaaaacaacacaaCATCACGCAATCA
CCATAACAACTGATGATACGtcatcaatttcaaaatttagggTTCTTTTT
GCGAAAAAAGCAAGAAAGTTGGGATgagttttaaatttcaaatttaataa
ttctatattattttttaaaacgaaatcttacaatatttttgtttgaaatt
tttgtaccATATTAAACTTGGGGag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041815XLOC_041815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066860-exon-scaffold_462-1491911889:62614..62898TCONS_00066860-exon-scaffold_462-1491911889:62614..62898Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1510915933:62614..62898TCONS_00066860-exon-scaffold_462-1510915933:62614..62898Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1575043694:62614..62898TCONS_00066860-exon-scaffold_462-1575043694:62614..62898Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1491911889:65753..65896TCONS_00066860-exon-scaffold_462-1491911889:65753..65896Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1510915933:65753..65896TCONS_00066860-exon-scaffold_462-1510915933:65753..65896Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1575043694:65753..65896TCONS_00066860-exon-scaffold_462-1575043694:65753..65896Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1491911889:66895..67062TCONS_00066860-exon-scaffold_462-1491911889:66895..67062Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1510915933:66895..67062TCONS_00066860-exon-scaffold_462-1510915933:66895..67062Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1575043694:66895..67062TCONS_00066860-exon-scaffold_462-1575043694:66895..67062Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1491911889:67435..67512TCONS_00066860-exon-scaffold_462-1491911889:67435..67512Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1510915933:67435..67512TCONS_00066860-exon-scaffold_462-1510915933:67435..67512Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1575043694:67435..67512TCONS_00066860-exon-scaffold_462-1575043694:67435..67512Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1491911889:68467..68738TCONS_00066860-exon-scaffold_462-1491911889:68467..68738Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1510915933:68467..68738TCONS_00066860-exon-scaffold_462-1510915933:68467..68738Clytia hemisphaericaexon
TCONS_00066860-exon-scaffold_462-1575043694:68467..68738TCONS_00066860-exon-scaffold_462-1575043694:68467..68738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:62614..68738 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
303.055	322.941	209.606	177.697	150.435	124.434	396.412	416.738	393.55	395.93	246.382	267.434	547.003	489.917	457.143	410.494	505.314	563.23	962.866	756.165	174.025	174.687	222.195	202.225	90.8071	98.2521	238.222	217.322	396.652	433.378
Blast
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BLAST of TCONS_00066860 vs. Swiss-Prot (Human)
Match: MYL1 (Myosin light chain 1/3, skeletal muscle isoform OS=Homo sapiens GN=MYL1 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 8.234e-42
Identity = 67/146 (45.89%), Postives = 99/146 (67.81%), Query Frame = 3 
Query:  267 SYEDMEEYRDTFSLFDKQGDGKIECGDIGDILRALGCNPTQAEVKKIVADIDSS--GQKRITFEEFIPIFHTMSKKKSSCGFEAFSEGFRIFDRDNNGMVSVAEVRHLLTSLGEKLNSSDVDALVQGLEDSSGMINYEEFVRGVMN 698
            S E  +E+++ F LFD+ GD KI    +GD+LRALG NPT AEV+K++ +  +     K+I FE+F+P+   +S  K    +E F EG R+FD++ NG V  AE+RH+L +LGEK+   +V+AL+ G EDS+G INYE FV+ +M+
Sbjct:   48 SKEQQDEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMS 193
The following BLAST results are available for this feature:
BLAST of TCONS_00066860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYL18.234e-4245.89Myosin light chain 1/3, skeletal muscle isoform OS... [more]
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