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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066870 ID=TCONS_00066870|Name=TCONS_00066870|organism=Clytia hemisphaerica|type=transcript|length=1700bp
aaaacatcattGTCAAATTTGGAATGGAAGAAAGTCCTGAATACAAAAAA
TGGACAGATCGGCTCAAGAAAACAACCTATATTTcttatttaataatttt
tcttggtGGTTTGGAAGTCAATGCTGTCCAAATTGTACTTTTATATTATT
TGGAGGAGAATTTTAACATGACTCCAAACCAAAGCAGACTGTATTACAGT
CTTGCTGAAATGTTTAACGCTTTTGGGCAGATGACAAGTGGATTAATGAT
TGGACGTTTTATGGACAGAACAAGGAATTTAAAATTAACctgtttattga
ttttatgTGCTACCATCGTTGGGAATTTGTTATATTCCTTGCCTTTTCAT
ATTTCGTTTATTCTGATTGGACGATTTTTATGTGGCTTTAATGAGGCGTT
CCAAGTTGCTTTATGTGGCGAATTCAAAAGATGTTATAAGGAAGACGATC
TGATCAGAATTTTGAGTTGGTACGAGCTCTTCTTCGCCATTGGCATGGCT
GTTGGACCTGGTGCACCAGTCATTTTCTCGTGGGtgaatttgaaaattgG
ACATTGGTGGATCAATAAATACAACGCATTGCATGTTTTCCTGACACTCT
TATTGGTATTATTGTTAATTTTACTATGGTTCCAACTCACTGATCTATCG
AAAGATCTAGACTgtatgaaagaaaaacatttgcgTCAGCGATCACAATT
GCAATGTAAGAAAGATGAGCAACGTGGTAGCTTAGCTTCTACAGAGCACC
ATGATAACGAGAGGTACAATAAGAAAGGACAATCACGAAAACTCATGAAA
TGGAAAGAGCTTTTGCAAATTGATATTATTACATTGTGCGGTTGTTATAC
TATTTTACGATACGCTGCAAATGCATCCGCAGCATTAATTGCAATGGACG
CTACTACATTATTCCATTGGCCAGTCAGTTGGATTTCATGGCTCACCATA
GCTGGAGCTGGCACTAATTTTCTTGGAATAACAATGTTGATAAAATGCGG
TGTCTTCAAAGGAATAAAACgaaattatttttgctttttatcgGCGATAA
ATACAACTATGTTTATTCTTGCACTGATGCTGTTACCGAAGATTACAAGC
ATCAAGAGTTAcacttttcaattactttattTGACTTTCCAAATACTTGC
TAAAGGATGGATTTATTTCAATGCCCAGTCAGCAGGGAAGATTTTGGTTT
TTAATACTGTAACACCAGAGAATTCTTGTCTGATTGACAGTATCAGGTCA
GCTGTTGGTTGCTTGGCTCGACTGTTTGCTTTTGCTACAAGTTTCTTATG
TTTTAATTACccagaatttttctttttaccaatTGGAACAATTTTGTTTC
TAGGGAATTGTGTTATAGTTTACAGATATAAGGCTCATATTTATAGACAG
GGTCAATAGGACGTCAGTCTCATCGATGCACTTGGATAAGGGGGTCAACT
TGCTTATTTCCAATCCAAAACCCGGAATTAAATAGATATCTAGCCAATTC
TAAACAAAATTCAAGTATTTactacaatcggcgccgaaatatattggatA
TCTTGGGAATGCAGAATTTAAagatcgggcgagaattgcagttttagtac
ttccactttgtttcattggatttttcgatttggaaGGGGTTAagtgactt
ccaggctatattatcaGCCTTATTataacatttttgagcttttacatcca Run BLAST on NCBI protein sequence of TCONS_00066870-protein >TCONS_00066870-protein ID=TCONS_00066870-protein|Name=TCONS_00066870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
NIIVKFGMEESPEYKKWTDRLKKTTYISYLIIFLGGLEVNAVQIVLLYYL
EENFNMTPNQSRLYYSLAEMFNAFGQMTSGLMIGRFMDRTRNLKLTCLLI
LCATIVGNLLYSLPFHISFILIGRFLCGFNEAFQVALCGEFKRCYKEDDL
IRILSWYELFFAIGMAVGPGAPVIFSWVNLKIGHWWINKYNALHVFLTLL
LVLLLILLWFQLTDLSKDLDCMKEKHLRQRSQLQCKKDEQRGSLASTEHH
DNERYNKKGQSRKLMKWKELLQIDIITLCGCYTILRYAANASAALIAMDA
TTLFHWPVSWISWLTIAGAGTNFLGITMLIKCGVFKGIKRNYFCFLSAIN
TTMFILALMLLPKITSIKSYTFQLLYLTFQILAKGWIYFNAQSAGKILVF
NTVTPENSCLIDSIRSAVGCLARLFAFATSFLCFNYPEFFFLPIGTILFL
GNCVIVYRYKAHIYRQGQ Run BLAST on NCBI transcript from alignment at scaffold_462:428538..430990+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066870 ID=TCONS_00066870|Name=TCONS_00066870|organism=Clytia hemisphaerica|type=transcript|length=2453bp|location=Sequence derived from alignment at scaffold_462:428538..430990+ (Clytia hemisphaerica)
aaaacatcattGTCAAATTTGGAATGGAAGAAAGTCCTGAATACAAAAAA
TGGACAGATCGGCTCAAGAAAACAACCTATATTTcttatttaataatttt
tcttggtGGTTTGGAAGTCAATGCTGTCCAAATTGTACTTTTATATTATT
TGGAGGAGAATTTTAACATGACTCCAAACCAAAGCAGACTGTATTACAGT
CTTGCTGAAATGTTTAACGCTTTTGGGCAGATGACAAGTGGATTAATGAT
TGGACGTTTTATGGACAGAACAAGGAATTTAAAATTAACctgtttattga
ttttatgTGCTACCATCGTTGGGAATTTGTTATATTCCTTGCCTTTTCAT
ATTTCGTTTATTCTGATTGGACGATTTTTATGTGGCTTTAATGAGGCGTT
CCAAGTTGCTTTATGTGGTAAGAAAACATCACACTTTCCccctaaaaagt
ttaaaaaaacttcTCTCGATATTGAGATGGCTATCATTGGAAGGTTCACC
CCTTGCATTTTCGGTAAATTATCGAGTCATCCTCATGGATTTTGTCTAAA
TCATAGAGAACTCCGCTGAATTTTGCTCATTTTTAATTGACCTCAGCCTT
GGATTTTCCCACAAATTTCACCGACCCCTGAGTtgttaaattttgttatt
ttagcACTTCCCTCTAAATATCTCCTAATAGCTTTGCGAATAGCTAAATA
TCAAGACGAGTTCATATACCAGTAAATAGAATTTTGATTGATCCTTTCTT
TTGCTGCCGAAGTCCATAGGTATTTTCGAGAGATTTTAATTTGCAGACTA
GCAGGTCAAATTAGTAAATGACTTCACGTATAACAGTTTCGTGGCATGTC
GGGCTCACACCTTGCCGAGTGAGATTAATTCTATCTTTGttatcttcaat
tttcattagGCGAATTCAAAAGATGTTATAAGGAAGACGATCTGATCAGA
ATTTTGAGTTGGTACGAGCTCTTCTTCGCCATTGGCATGGCTGTTGGACC
TGGTGCACCAGTCATTTTCTCGTGGGtgaatttgaaaattggtaaatata
atatatttcatAAATTCGTGTAAGATAGCTCTAGTTTAGTGATCGACTTT
CTACCTGTCTATTATAATTCGGAATAAAAGTTGGCAGAGAGTTGCTGGCT
GTCTAAAGACAAGTTAAAGCTAATAAGGGATGCCGGATTGAATATAGGAT
ATTTAGGTACAAAAATGGGCTAAAGGTTTGTATGGGAATCATTCTCATTT
GTAATGAAGCCTCTCCAGTTTTATTTCATTAGTTGTCAATACAATTTTAC
AGGACATTGGTGGATCAATAAATACAACGCATTGCATGTTTTCCTGACAC
TCTTATTGGTATTATTGTTAATTTTACTATGGTTCCAACTCACTGATCTA
TCGAAAGATCTAGACTgtatgaaagaaaaacatttgcgTCAGCGATCACA
ATTGCAATGTAAGAAAGATGAGCAACGTGGTAGCTTAGCTTCTACAGAGC
ACCATGATAACGAGAGGTACAATAAGAAAGGACAATCACGAAAACTCATG
AAATGGAAAGAGCTTTTGCAAATTGATATTATTACATTGTGCGGTTGTTA
TACTATTTTACGATACGCTGCAAATGCATCCGCAGCATTAATTGCAATGG
ACGCTACTACATTATTCCATTGGCCAGTCAGTTGGATTTCATGGCTCACC
ATAGCTGGAGCTGGCACTAATTTTCTTGGAATAACAATGTTGATAAAATG
CGGTGTCTTCAAAGGAATAAAACgaaattatttttgctttttatcgGCGA
TAAATACAACTATGTTTATTCTTGCACTGATGCTGTTACCGAAGATTACA
AGCATCAAGAGTTAcacttttcaattactttattTGACTTTCCAAATACT
TGCTAAAGGATGGATTTATTTCAATGCCCAGTCAGCAGGGAAGATTTTGG
TTTTTAATACTGTAACACCAGAGAATTCTTGTCTGATTGACAGTATCAGG
TCAGCTGTTGGTTGCTTGGCTCGACTGTTTGCTTTTGCTACAAGTTTCTT
ATGTTTTAATTACccagaatttttctttttaccaatTGGAACAATTTTGT
TTCTAGGGAATTGTGTTATAGTTTACAGATATAAGGCTCATATTTATAGA
CAGGGTCAATAGGACGTCAGTCTCATCGATGCACTTGGATAAGGGGGTCA
ACTTGCTTATTTCCAATCCAAAACCCGGAATTAAATAGATATCTAGCCAA
TTCTAAACAAAATTCAAGTATTTactacaatcggcgccgaaatatattgg
atATCTTGGGAATGCAGAATTTAAagatcgggcgagaattgcagttttag
tacttccactttgtttcattggatttttcgatttggaaGGGGTTAagtga
cttccaggctatattatcaGCCTTATTataacatttttgagcttttacat
cca Coding sequence (CDS) from alignment at scaffold_462:428538..430990+ >TCONS_00066870 ID=TCONS_00066870|Name=TCONS_00066870|organism=Clytia hemisphaerica|type=CDS|length=4221bp|location=Sequence derived from alignment at scaffold_462:428538..430990+ (Clytia hemisphaerica)
aacatcattGTCAAATTTGGAATGGAAGAAAGTCCTGAATACAAAAAATG
GACAGATCGGCTCAAGAAAACAACCTATATTTcttatttaataatttttc
ttggtGGTTTGGAAGTCAATGCTGTCCAAATTGTACTTTTATATTATTTG
GAGGAGAATTTTAACATGACTCCAAACCAAAGCAGACTGTATTACAGTCT
TGCTGAAATGTTTAACGCTTTTGGGCAGATGACAAGTGGATTAATGATTG
GACGTTTTATGGACAGAACAAGGAATTTAAAATTAACctgtttattgatt
ttatgTGCTACCATCGTTGGGAATTTGTTATATTCCTTGCCTTTTCATAT
TTCGTTTATTCTGATTGGACGATTTTTATGTGGCTTTAATGAGGCGTTCC
AAGTTGCTTTATGTGGCGAATTCAAAAGATGTTATAAGGAAGACGATCTG
ATCAGAATTTTGAGTTGGTACGAGCTCTTCTTCGCCATTGGCATGGCTGT
TGGACCTGGTGCACCAGTCATTTTCTCGTGGGtgaatttgaaaattgGAC
ATTGGTGGATCAATAAATACAACGCATTGCATGTTTTCCTGACACTCTTA
TTGGTATTATTGTTAATTTTACTATGGTTCCAACTCACTGATCTATCGAA
AGATCTAGACTgtatgaaagaaaaacatttgcgTCAGCGATCACAATTGC
AATGTAAGAAAGATGAGCAACGTGGTAGCTTAGCTTCTACAGAGCACCAT
GATAACGAGAGGTACAATAAGAAAGGACAATCACGAAAACTCATGAAATG
GAAAGAGCTTTTGCAAATTGATATTATTACATTGTGCGGTTGTTATACTA
TTTTACGATACGCTGCAAATGCATCCGCAGCATTAATTGCAATGGACGCT
ACTACATTATTCCATTGGCCAGTCAGTTGGATTTCATGGCTCACCATAGC
TGGAGCTGGCACTAATTTTCTTGGAATAACAATGTTGATAAAATGCGGTG
TCTTCAAAGGAATAAAACgaaattatttttgctttttatcgGCGATAAAT
ACAACTATGTTTATTCTTGCACTGATGCTGTTACCGAAGATTACAAGCAT
CAAGAGTTAcacttttcaattactttattTGACTTTCCAAATACTTGCTA
AAGGATGGATTTATTTCAATGCCCAGTCAGCAGGGAAGATTTTGGTTTTT
AATACTGTAACACCAGAGAATTCTTGTCTGATTGACAGTATCAGGTCAGC
TGTTGGTTGCTTGGCTCGACTGTTTGCTTTTGCTACAAGTTTCTTATGTT
TTAATTACccagaatttttctttttaccaatTGGAACAATTTTGTTTCTA
GGGAATTGTGTTATAGTTTACAGATATAAGGCTCATATTTATAGACAGGG
TCAATAGaacatcattGTCAAATTTGGAATGGAAGAAAGTCCTGAATACA
AAAAATGGACAGATCGGCTCAAGAAAACAACCTATATTTcttatttaata
atttttcttggtGGTTTGGAAGTCAATGCTGTCCAAATTGTACTTTTATA
TTATTTGGAGGAGAATTTTAACATGACTCCAAACCAAAGCAGACTGTATT
ACAGTCTTGCTGAAATGTTTAACGCTTTTGGGCAGATGACAAGTGGATTA
ATGATTGGACGTTTTATGGACAGAACAAGGAATTTAAAATTAACctgttt
attgattttatgTGCTACCATCGTTGGGAATTTGTTATATTCCTTGCCTT
TTCATATTTCGTTTATTCTGATTGGACGATTTTTATGTGGCTTTAATGAG
GCGTTCCAAGTTGCTTTATGTGGCGAATTCAAAAGATGTTATAAGGAAGA
CGATCTGATCAGAATTTTGAGTTGGTACGAGCTCTTCTTCGCCATTGGCA
TGGCTGTTGGACCTGGTGCACCAGTCATTTTCTCGTGGGtgaatttgaaa
attgGACATTGGTGGATCAATAAATACAACGCATTGCATGTTTTCCTGAC
ACTCTTATTGGTATTATTGTTAATTTTACTATGGTTCCAACTCACTGATC
TATCGAAAGATCTAGACTgtatgaaagaaaaacatttgcgTCAGCGATCA
CAATTGCAATGTAAGAAAGATGAGCAACGTGGTAGCTTAGCTTCTACAGA
GCACCATGATAACGAGAGGTACAATAAGAAAGGACAATCACGAAAACTCA
TGAAATGGAAAGAGCTTTTGCAAATTGATATTATTACATTGTGCGGTTGT
TATACTATTTTACGATACGCTGCAAATGCATCCGCAGCATTAATTGCAAT
GGACGCTACTACATTATTCCATTGGCCAGTCAGTTGGATTTCATGGCTCA
CCATAGCTGGAGCTGGCACTAATTTTCTTGGAATAACAATGTTGATAAAA
TGCGGTGTCTTCAAAGGAATAAAACgaaattatttttgctttttatcgGC
GATAAATACAACTATGTTTATTCTTGCACTGATGCTGTTACCGAAGATTA
CAAGCATCAAGAGTTAcacttttcaattactttattTGACTTTCCAAATA
CTTGCTAAAGGATGGATTTATTTCAATGCCCAGTCAGCAGGGAAGATTTT
GGTTTTTAATACTGTAACACCAGAGAATTCTTGTCTGATTGACAGTATCA
GGTCAGCTGTTGGTTGCTTGGCTCGACTGTTTGCTTTTGCTACAAGTTTC
TTATGTTTTAATTACccagaatttttctttttaccaatTGGAACAATTTT
GTTTCTAGGGAATTGTGTTATAGTTTACAGATATAAGGCTCATATTTATA
GACAGGGTCAATAGaacatcattGTCAAATTTGGAATGGAAGAAAGTCCT
GAATACAAAAAATGGACAGATCGGCTCAAGAAAACAACCTATATTTctta
tttaataatttttcttggtGGTTTGGAAGTCAATGCTGTCCAAATTGTAC
TTTTATATTATTTGGAGGAGAATTTTAACATGACTCCAAACCAAAGCAGA
CTGTATTACAGTCTTGCTGAAATGTTTAACGCTTTTGGGCAGATGACAAG
TGGATTAATGATTGGACGTTTTATGGACAGAACAAGGAATTTAAAATTAA
CctgtttattgattttatgTGCTACCATCGTTGGGAATTTGTTATATTCC
TTGCCTTTTCATATTTCGTTTATTCTGATTGGACGATTTTTATGTGGCTT
TAATGAGGCGTTCCAAGTTGCTTTATGTGGCGAATTCAAAAGATGTTATA
AGGAAGACGATCTGATCAGAATTTTGAGTTGGTACGAGCTCTTCTTCGCC
ATTGGCATGGCTGTTGGACCTGGTGCACCAGTCATTTTCTCGTGGGtgaa
tttgaaaattgGACATTGGTGGATCAATAAATACAACGCATTGCATGTTT
TCCTGACACTCTTATTGGTATTATTGTTAATTTTACTATGGTTCCAACTC
ACTGATCTATCGAAAGATCTAGACTgtatgaaagaaaaacatttgcgTCA
GCGATCACAATTGCAATGTAAGAAAGATGAGCAACGTGGTAGCTTAGCTT
CTACAGAGCACCATGATAACGAGAGGTACAATAAGAAAGGACAATCACGA
AAACTCATGAAATGGAAAGAGCTTTTGCAAATTGATATTATTACATTGTG
CGGTTGTTATACTATTTTACGATACGCTGCAAATGCATCCGCAGCATTAA
TTGCAATGGACGCTACTACATTATTCCATTGGCCAGTCAGTTGGATTTCA
TGGCTCACCATAGCTGGAGCTGGCACTAATTTTCTTGGAATAACAATGTT
GATAAAATGCGGTGTCTTCAAAGGAATAAAACgaaattatttttgctttt
tatcgGCGATAAATACAACTATGTTTATTCTTGCACTGATGCTGTTACCG
AAGATTACAAGCATCAAGAGTTAcacttttcaattactttattTGACTTT
CCAAATACTTGCTAAAGGATGGATTTATTTCAATGCCCAGTCAGCAGGGA
AGATTTTGGTTTTTAATACTGTAACACCAGAGAATTCTTGTCTGATTGAC
AGTATCAGGTCAGCTGTTGGTTGCTTGGCTCGACTGTTTGCTTTTGCTAC
AAGTTTCTTATGTTTTAATTACccagaatttttctttttaccaatTGGAA
CAATTTTGTTTCTAGGGAATTGTGTTATAGTTTACAGATATAAGGCTCAT
ATTTATAGACAGGGTCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066870-exon-scaffold_462-1491911889:428538..428954 | TCONS_00066870-exon-scaffold_462-1491911889:428538..428954 | Clytia hemisphaerica | exon |
| TCONS_00066870-exon-scaffold_462-1510915933:428538..428954 | TCONS_00066870-exon-scaffold_462-1510915933:428538..428954 | Clytia hemisphaerica | exon |
| TCONS_00066870-exon-scaffold_462-1575043694:428538..428954 | TCONS_00066870-exon-scaffold_462-1575043694:428538..428954 | Clytia hemisphaerica | exon |
| TCONS_00066870-exon-scaffold_462-1491911889:429447..429578 | TCONS_00066870-exon-scaffold_462-1491911889:429447..429578 | Clytia hemisphaerica | exon |
| TCONS_00066870-exon-scaffold_462-1510915933:429447..429578 | TCONS_00066870-exon-scaffold_462-1510915933:429447..429578 | Clytia hemisphaerica | exon |
| TCONS_00066870-exon-scaffold_462-1575043694:429447..429578 | TCONS_00066870-exon-scaffold_462-1575043694:429447..429578 | Clytia hemisphaerica | exon |
| TCONS_00066870-exon-scaffold_462-1491911889:429840..430990 | TCONS_00066870-exon-scaffold_462-1491911889:429840..430990 | Clytia hemisphaerica | exon |
| TCONS_00066870-exon-scaffold_462-1510915933:429840..430990 | TCONS_00066870-exon-scaffold_462-1510915933:429840..430990 | Clytia hemisphaerica | exon |
| TCONS_00066870-exon-scaffold_462-1575043694:429840..430990 | TCONS_00066870-exon-scaffold_462-1575043694:429840..430990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:428538..430990 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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