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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066877 ID=TCONS_00066877|Name=TCONS_00066877|organism=Clytia hemisphaerica|type=transcript|length=2101bp
TCAGTGCCCTTGCACTAGGCTATGAAAATAATGGTATAAGCTTTACATGG
tatagatttttgattttgagagttCAAGGATAGTTCTCAAGAATAGCTTA
CTCCATGTGCAATTGACTATCTTTGGTATTGGTGAAGCATTGGTGTAGAA
CTTGTTTACTTTATATTGTGGAAGATCGTAAATATTGAACCAAACCAAGA
AGCAAACTAGCTCAAACCAAAAAATGGCACCTCACACTTCATGTGATTCA
ACAATCGATGGATGCGATATAATGAACCCTAAAGATGTCGAGCAGAATCT
ATCATGCTACGCTGACAGTACTGAACACGAGACGACGTTACAATCGTTAA
ATCCAATCTCTCAAGAGGTGTCGGGTAATGATACAGACCCAGATAACGTT
TCATCGAATTATTATTTCACGTCGGACGATGAAGGTTATTGCTGTAGTAA
CTATGATGCCGACGACGAGGACATTTACCGACAATCACCGAGAGACGAGG
AAAACAATAACCGAGTACCGAGTCTTGCCGAGGATGATGACGACGActct
ttattttgttttcgCATTAAATCCGACCATACCATTTACACAATAAATGA
TGCTATGGAGATTTTAAAACAACGACCAAAATTAACCGATCGTTTGTATT
GTCAAGAAGATAGCGACGACTGTTTCCGAGAATCAGAGTACGACGTCATC
GATACCGACGATTCTGATAATGCTGATATTGTTGAAGTGATCAATGGTAC
GACCAATAATCCGGATACTTCAAGAATCGAAATAAAAGTTCGAGCACATA
CATTAAACGATGAAGGACGTCTTATTGAAGTTAAAACTACTCCTGTTCGA
GACAAAAATAAACTCAAAATCGGTAAAGTCAGATCGTTACCCGGTATCCG
TTTTCCAATCCGAAACGGGAAATCTAAATGTTATCGCTCAACATCAGAAA
TATCATTAGTTTCAGcaaaaagtcagcaaaaactCGATACAGTTTACGAT
GAActtattttaaaagaaagttacCTAACGACATGTACTACTCCAACAAA
GTCACACCGCTCGGAATCTTCTGATGCTGATTACCTTACAACAATAAATC
GCTGTTACAGCGCAGACAGTCAAATAGATACAAATATAGAAACTCAAACA
GAAGACACTGCACCTACCAAATTCTTTTCAATGCTTAAGTTGAatagcaa
aaaacgtaaaaaaactaTACAACGCTTAGAGTTTCAAACACAAGATCATT
CTTCTAAAGGACGTTTTCAAGTAACTACAGTTGACGAAGTTGCAACTcca
gaaaatgaagtcaaatTTACACTTGGTGGAAAACACTCCTTACTAACATC
AAGTACAACAGATGAAAAACAATTAGTTAATGGCAGCTTGAAAATGCATA
ATCGTGATCTCTTTGAACATTGCTTTTTAAAATCATACGAAATCCTTTAA
ATTTCAACTGCCgattattttaaaacttttatgttATATTTTATCGAACA
ATATATACGATATGTTGCTGGAACCTTCATTAATGTTTGCTGGTCAAAAC
TTTTAATacaattatttctaaaaaaaagatttgtatATAATGTCAAATTT
GTTTACAAAATCGAAAGTCATTAAGAATCTTCGATCTGACAGTAAACTTT
AACCCATGAACAAACAATAAGTTAAATCAAGCCAAGGTCCTACAATTTAA
CAAATCTTACTTACCCTTTTTCAGTAGCTGGTCTATTGTAGAAAGGGCTC
ggtctttttattttaaaataaggCCTCAAGGCTTGAGGACgaaaatgttt
gttttggaTAAAAGTTAatagtcaaaaatattttacatccATTAATTTTA
TTAGTCAAAAACCataaaatctaattttaaaaacgttttattttatatat
tttaatttaTCAATTTCCTTCTCGCCACACTAACTTTTATACCTTAACCA
AACTTTGTACATAAATTTCTcatatattattttttagatacgccaattaa
aattaaaataacttaaaaatttcatgaaaaataaatactttCTTGAATTT
GGTTGGCCAACATACCTCCATctcctcgttgaaaagataattttaagcga
a Run BLAST on NCBI transcript from alignment at scaffold_462:480854..486119+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066877 ID=TCONS_00066877|Name=TCONS_00066877|organism=Clytia hemisphaerica|type=transcript|length=5266bp|location=Sequence derived from alignment at scaffold_462:480854..486119+ (Clytia hemisphaerica)
TCAGTGCCCTTGCACTAGGCTATGAAAATAATGGTATAAGCTTTACATGG
tatagatttttgattttgagagttCAAGGATAGTTCTCAAGAATAGCTTA
CTCCATGTGCAATTGACTATCTTTGGTATTGGTGAAGCATTGGTGTAGAA
CTTGTTTACTTTATATTGTGGAAGATCGTAAATATTGAACCAAACCAAGA
AGCAAACTAGCTCAAACCAAAAAAGTAATTATActcttttctaaattttt
ctttttaagctATTTCGGGACCATATTGGACATACCAATATGGAGAAATA
GAATGTCCGTAAATGAAGGCTTTATTGATTGAATTAAATTTGTCTTTTCG
CCCttcttttttggtaaaaatataaatataatataatatcttGAATACTC
ATGGTGACCTGGAAGAAACTTTCTTGAGCTCAATAGAGTGTACATAGTGA
TGATTGATGGAAAGTTTATAAAAGGATATAATAATGTTTCGGCTGACGTT
TTGAAGTACAGGACATCAATTAGGAAGTGAACTAAATATAACAGTAAGAG
AGAGAAGAGAGTGAGATATCCATGGTAATGAGAAACAGTGTGAAACTCTG
TAAAAACTTGTTGATAGTTTGTTTACTTTACTTTTGCTGTCCTGAGAAAT
TTGGTGACATACTCCTGATTTTTTAGTGACCTGTCATTTTCGGTTTTTTT
GGTGGTGTAATCACTCTATCTTTCAGTCACCTAGGTTATTATCTCCAAAG
AACTTTACACACGTGAAGGCATTTTTTCTTTGCTCCTGATTCAAAGTGTT
TACCTAATCAAAAGTAAATTATATTTGGGAGCTTCGTGATGAAAAAACCT
CCTTACTCGCCTCCTTACTTAAGCGATCGATCATATACCCGATTTGAACT
CATTTCAGGATATTTGCGTTATTGTCTCATACGAGTAGGTCATTTGAACA
cattttacacccctgtgtcacagacccggtggacccctcgccccggtgga
aaaaaaggccaaaaaatcgtccccggtggaaaaaatgccctacattttca
accccactgggaaattgccctatgattctatccccattgaaaattgaatg
gaaaaaattggactccaaaaccatccccactggaatattttagctggaaa
caatagattttctatccctattgggatttcgatagaaattttcattacaa
CTGGCGGAAAAGGTTTCACCGGGGaactgagaaaggggtgtactAGATAA
ATGGATGATTTCACATAAAACTTTAAACAGTATTGAGAAAAGTTACGCaa
tcgttttttataagaaataaaaNTTGGGATTTCcattagaaattttcatc
cccactgagggaaaaggttccaccggggcactgagacaggggtgtaattt
tAGATATTTGACCTAAACAAGATTTTTTGGGAGGTATCAAAAGTTACTTC
CTGAATTCCTGACATCATCAAAGGCTTTCTTTATAATATGCCCACATACA
GGATTTCAAATCTGTCAACACAAAATACactttaaacaaaaaaagttgTG
AAATTTATGCCAATGTTAACCTGTgccttttcaaaacatttaaaacatgg
TATCGAatgcaaataaaaaatgttctaACTTCTGACGTCAGAGTATCTCT
GGTATGACTCGTGATTTGAGGATgcattcattttttgttttgttgatttt
gttctATGGTATCCATATATCTTTATGTTTACGAGTTTTCTATCATTTTG
GATAACGACAAGGTCAAAACAGGAGTTCGAATgaggtttttcaaaaataa
tatatGTCTCTGATTTCAAGTCGGTAATATAAAAGTAAGTTAgacctttc
tttttcttcatttaagTTGCTGATTTAAGTGAAAAGTTAACTTAAAGATA
TTGGTTTAAACCATGGAGACTGGTGGCTTCGAGCAATGGTTTATCGTATT
TCTTTCATCACAGTAAACCCTTTACAACAATTTAGACAAGAAAGAGTTGC
AAGCAGTGACAAACAACGAGAAAAAAATAGACATAAGACTCAGAGGAGCA
GAGTGGACAGACAATATTAGAAACGAGAAAGCAAAGTAGATACACGGTGC
GAGTCGAAAGAATAAGTGTAAGCGTATATTCGCGTTGGATTTGCCGATTA
AAACGATTAAATAATGGGAAAACATGCTTATACGATCATAGCGCGTGAAA
AAAACAAGGTTTGAAGGAAAAAATGATATTAGTGTTATTGTAATGATTCT
TAATCATAAACGATAATCTAAAGTTTTGACAAGCCGTTGAATTCTGTTTA
TTTAGATCATAGTGAATCGCTTTAGAGGCAGATTTACTTAAtgaaaatat
gagaaaaaaagGAGCGACTATGGGACAGACTATCATTTTGACTGTGTCTT
TATCGCTGTCCCCTTTTTGTGTTTGCGCGTGAGGTGCTTTGAGGTGCTTT
TGTTTATTGCTTGCGCTACATGGtgtttttatgaccaaaatttgtatttt
tttatgaatgggAAATTTTGCTTTTGACAAAGAGTGATTTGTTTGTAAGA
AGAAAATttcacatgatcaaaaaattgtttttgagacattgaatttgaat
ttgttgCTGTGGtgattttgttttcttgatcaTGATAGATATGAGAAATT
GTTGGAAAGAAGAACTTGACTTATTTGTTGTACGcaaaaattccattgaa
aaggGTATCTACTTAAACTTACTTTTCGTGTTATCCAGGCTTGATATTTA
ATACTAATTATGGTCCACGcaatgaaattgaaagttgGGAACCAATgaat
atagagtctaaggaAGCGCGACCAAACatttttactttgcaaaaaaatgg
GCGTAGGCCCTGCTAATAATggttttcttgaaaagaaaaagaacactAAA
GTGACTTTATTCAGCATTTAAATTATAACTCTCTCAAAGACAGTTTAAAA
ACACATAGTTACAGCAATCTGTAGTGTCTTTGCCAGGAAAGCTACattgt
aataaaaaaaatttgtcgaGACAGGGTGTGTCCAAGCAGATGTTCAGTAG
GATACGCCTCAGTCCACCTTTAAAGGAAATACAATTGACCTTCTCTGAAA
TAGGCGAAAGAGGAAAAATGAAGTTCGATTAGCAATATGCAAACAATATT
TAAGCTAGCATCCAGGATGGCTTTTAAAGGGCTGTAAAATGATCAAATGA
CATCATTAGGAAGTCGTAAAATCGCATCCTGGAATATGAAATGTTATTTG
CTAAACAGAAGGCggtaattatttaaaaaatgtcaatataGGAGAACTGT
TCATATCAGTCAAGTATGCTTTTCTACTCAACAGTATTAagttctttttt
atatcaaatttcatgaattattttctttgttttttacaGTGGCACCTCAC
ACTTCATGTGATTCAACAATCGATGGATGCGATATAATGAACCCTAAAGA
TGTCGAGCAGAATCTATCATGCTACGCTGACAGTACTGAACACGAGACGA
CGTTACAATCGTTAAATCCAATCTCTCAAGAGGTGTCGGGTAATGATACA
GACCCAGATAACGTTTCATCGAATTATTATTTCACGTCGGACGATGAAGG
TTATTGCTGTAGTAACTATGATGCCGACGACGAGGACATTTACCGACAAT
CACCGAGAGACGAGGAAAACAATAACCGAGTACCGAGTCTTGCCGAGGAT
GATGACGACGActctttattttgttttcgCATTAAATCCGACCATACCAT
TTACACAATAAATGATGCTATGGAGATTTTAAAACAACGACCAAAATTAA
CCGATCGTTTGTATTGTCAAGAAGATAGCGACGACTGTTTCCGAGAATCA
GAGTACGACGTCATCGATACCGACGATTCTGATAATGCTGATATTGTTGA
AGTGATCAATGGTACGACCAATAATCCGGATACTTCAAGAATCGAAATAA
AAGTTCGAGCACATACATTAAACGATGAAGGACGTCTTATTGAAGTTAAA
ACTACTCCTGTTCGAGACAAAAATAAACTCAAAATCGGTAAAGTCAGATC
GTTACCCGGTATCCGTTTTCCAATCCGAAACGGGAAATCTAAATGTTATC
GCTCAACATCAGAAATATCATTAGTTTCAGcaaaaagtcagcaaaaactC
GATACAGTTTACGATGAActtattttaaaagaaagttacCTAACGACATG
TACTACTCCAACAAAGTCACACCGCTCGGAATCTTCTGATGCTGATTACC
TTACAACAATAAATCGCTGTTACAGCGCAGACAGTCAAATAGATACAAAT
ATAGAAACTCAAACAGAAGACACTGCACCTACCAAATTCTTTTCAATGCT
TAAGTTGAatagcaaaaaacgtaaaaaaactaTACAACGCTTAGAGTTTC
AAACACAAGATCATTCTTCTAAAGGACGTTTTCAAGTAACTACAGTTGAC
GAAGTTGCAACTccagaaaatgaagtcaaatTTACACTTGGTGGAAAACA
CTCCTTACTAACATCAAGTACAACAGATGAAAAACAATTAGTTAATGGCA
GCTTGAAAATGCATAATCGTGATCTCTTTGAACATTGCTTTTTAAAATCA
TACGAAATCCTTTAAATTTCAACTGCCgattattttaaaacttttatgtt
ATATTTTATCGAACAATATATACGATATGTTGCTGGAACCTTCATTAATG
TTTGCTGGTCAAAACTTTTAATacaattatttctaaaaaaaagatttgta
tATAATGTCAAATTTGTTTACAAAATCGAAAGTCATTAAGAATCTTCGAT
CTGACAGTAAACTTTAACCCATGAACAAACAATAAGTTAAATCAAGCCAA
GGTCCTACAATTTAACAAATCTTACTTACCCTTTTTCAGTAGCTGGTCTA
TTGTAGAAAGGGCTCggtctttttattttaaaataaggCCTCAAGGCTTG
AGGACgaaaatgtttgttttggaTAAAAGTTAatagtcaaaaatatttta
catccATTAATTTTATTAGTCAAAAACCataaaatctaattttaaaaacg
ttttattttatatattttaatttaTCAATTTCCTTCTCGCCACACTAACT
TTTATACCTTAACCAAACTTTGTACATAAATTTCTcatatattatttttt
agatacgccaattaaaattaaaataacttaaaaatttcatgaaaaataaa
tactttCTTGAATTTGGTTGGCCAACATACCTCCATctcctcgttgaaaa
gataattttaagcgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066877-exon-scaffold_462-1491911889:480854..481077 | TCONS_00066877-exon-scaffold_462-1491911889:480854..481077 | Clytia hemisphaerica | exon |
| TCONS_00066877-exon-scaffold_462-1510915933:480854..481077 | TCONS_00066877-exon-scaffold_462-1510915933:480854..481077 | Clytia hemisphaerica | exon |
| TCONS_00066877-exon-scaffold_462-1575043694:480854..481077 | TCONS_00066877-exon-scaffold_462-1575043694:480854..481077 | Clytia hemisphaerica | exon |
| TCONS_00066877-exon-scaffold_462-1491911889:484243..486119 | TCONS_00066877-exon-scaffold_462-1491911889:484243..486119 | Clytia hemisphaerica | exon |
| TCONS_00066877-exon-scaffold_462-1510915933:484243..486119 | TCONS_00066877-exon-scaffold_462-1510915933:484243..486119 | Clytia hemisphaerica | exon |
| TCONS_00066877-exon-scaffold_462-1575043694:484243..486119 | TCONS_00066877-exon-scaffold_462-1575043694:484243..486119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:480854..486119 + |
Blast
The following BLAST results are available for this feature:
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