|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066894 ID=TCONS_00066894|Name=TCONS_00066894|organism=Clytia hemisphaerica|type=transcript|length=2745bp
TTATAGCAaatccaaataaaaaacaattattaaaaACAAATAACGTTTTG
ATAATTCTGCACAATTTTGACAAACATGTTAGCTCTGTTAAGAAGACACt
ccaattttaccaaatttgGGTGTAGAACTATCAGAAGGTTTCGTGTGTTG
GATGGAAATCTGTCCTTGGATCAAAGTGAAAGAGATAGACTAGCGGATGA
AGCACAAAAGTCAGAAGAGTTGTATCAAGAGAAACTGGCTCAAGTTATGG
CAGGAAGTAGTGCATCAGCTGTAGCCCGTCATACACAGAAAAATAAGAAA
CTGCTAGCTCGAGATCGGATTAAACTACTTGTAGACCAGGACTACCCTGT
TTTGGAGCTAAGTGCTCTGGCTGGATTGGACATGGAGTATGGGGACGTTT
TGAGTGCTGGTATTGTGGGTTGTATAGCAAAAGTCAGTGGCCAGCTATGC
GTCATCAATGCTAATGATGCTACTGTCAAAGGTGGAACAATTTATCCCAT
CTCGTTGAAGAAACAACTTCGTTTACAAGAGATTTGCGAACAGAACAATC
TTCCTGCTGTTTATCTCATCGATTCGGGTGGTGCTTTCTTGCCGTTACAA
TCAGAAATTTTTGTTGAAGGTGGACGCTCTTTTTATAATGAAGCAATCAT
GAACTCCAAAGGAATTCCACAGTTATGTATGGTTGCCGGTTCGTGCACAG
CTGGAGCGGCTTACATCCCTACAATGGCTAACGAAGTCGTCATGGTTGAC
AAAATAGGAACTATTTTCTTGGCTGGTCCTCCACTAGTGCACGCGGCTAT
CGGCCAACAAATCACAGAAGAAGCATTGGGTGGAGCCACGGTGCACTGTG
AGGTTTCTGGATGTGCTGATTATAAAGCTAAAGATGAAATTGATGCTATA
GATACGATGAAAGATGTTTTATCGACTTTGAACTTACCAGAGTTCTTGCC
GAAGTTGTCATTCGTTGAGGACCCGTTCTTTAATGAAGAGGATCTGTCTA
TTTTGTCCGTAAAGCGTGACGcggacggaaaattagacacaAAGAAGATT
GTAGCACGCATTGTTGATGGAAGTCGTTTTCACGAATATAAACCAACTTA
TGGGCGTGAAATCATATGTGGATTTGCGCGACTGGGGAGTATGCTTGTTG
GTGTGGTCGCAAATGATGGGCGTTTCACGCCTCAATCTTGTTTGAAAGCT
TCCAATTTTGTTTGTCTGTGTGATGAAAGAGGAATCCCTCTTGTGTTCCT
TCAAGACATCTTGAAAGTCGAAAATGCGGAAACCGCGATAGAACTTATTA
AGTATCAAGCTGAATTAATGTCGTACGTAGCTACAACTCAAGTTCCAAAG
ATTACTATTATAATGGGAAACAGTTTTGGAGTTGGCAACTATGCTATGTG
TGGTCGTAGCATGAGTCCACGATTCTTGTTTTCATGGCCGACGGCCCGTG
TTAGTATACATAGCGTTGATGACATGAAACAGACTATAAATAATGATGAA
AAGCACTTGCAGAGGCTAGAACGTGAAGTCACTTCTGTTTATAGTTCGTC
ACGTATTTGGGATGATGGAATTGTTTTACCAAAAGATACACGGCAGGCTT
TGATTCAATCTTTGACAGCTAGTATGATGCATAAGGAGACTAAGAAGTCT
TCGAATAAAAATGTGGTCAGACTTTAAATAGAGTATTCGCTAACGTAACG
ATATGTCGGAACGCGTTTGCAATAATTATTTTACCCTTGATTTTATTCAG
GGTCAGGTTGTAAATagtaatgattttatttttaaggttttattttttat
acgtACTGTACGCTTCACACGACCTTTAAGAATAATTATGAATTTTAATG
AAACTACAGTAGACTCCCAGTTATTCGAAGCTCCAAGGGGGtaagaattt
acttcgaataaccgggagttcgAATAATataactgaaaaattcattttcc
tGTTAGATTCTCAACTTAGACTTAATTGGAGGGATTTTTCTGAAGTAATT
GAGACATTGTGGTTCAGTTGAGCGtaataaacacaaagaaattgcTTGAA
TAGCAATATATAGCCATGAATATTGAAACCTGATTTATTAGAGAAAATTT
CAATAGCAGAAAATCAATGTTCTCACTCGAAGATCTCCCAATATGAACAA
TTAATTCGAATAACTGAGGCTGATTTAGCCTATAATGTATCCCCAGGGGA
ATAGAAATCGCTTCGAATAACTGAACGTTCAAATAACTGAAGTTCGGATA
ACCGAGAGTGTTTTTGCCTGGGTTGAGTAAGCAGATCCAAGGGGAACACC
ATCTCACTTCGAATAACCGGTAGTCTATTGTATGAATGAAAGAAAAACTA
TAAAGATTTTGAATGGAATATCCGACTAGACGAATGGTCACTAAAAAAAA
ACGATAAACATTAAAGCACTTAGAGTgcacagtttgaacaaaaatatcct
cTTTTGCTCCTCCCCCGGTTCGTTTCTAACTGcatcttgaaagaaaaatt
gtgGTTTAAAGGCCAGACCACAGAAagaaaaacacctttaaaaacCTTGT
TTTATACGGgacaatttttcattattttatggATAATATTCAGTTCCAAT
TtcgcattttatttttaatcactTCTTTTTAGAATTAACAGGATAACTTA
TGAGTTATGATAggtaatttttgtaaataaaactTATGGATTTTATGGAT
TCTTAacgttaaaatatttttgaagaattttcacttGATATTTTC Run BLAST on NCBI transcript from alignment at scaffold_462:632561..637167+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066894 ID=TCONS_00066894|Name=TCONS_00066894|organism=Clytia hemisphaerica|type=transcript|length=4607bp|location=Sequence derived from alignment at scaffold_462:632561..637167+ (Clytia hemisphaerica)
TTATAGCAaatccaaataaaaaacaattattaaaaACAAATAACGTTTTG
ATAATTCTGCACAATTTTGACAAACATGTTAGCTCTGTTAAGAAGACACt
ccaattttaccaaatttgGGTGTAGAACTATCAGAAGGTTTCGTGTGTTG
GATGGAAATCTGTCCTTGGATCAAAGTGAAAGAGATAGACTAGCGGATGA
AGCACAAAAGTCAGAAGAGTTGTATCAAGAGAAACTGGCTCAAGTTATGG
CAGGTAAGTTGAAGCATTTTCAGANGTTGTATCAAGAGAAATTGGCTCAA
ATTATGGCAGGTAAGTTGAAGCATTTTCAGATCTAATTATCCCcataatc
tttttttgaaattgttcttgATAATCTGGTGTAATACTTGCTTTCTGTAT
TATATCAGATTGCAACGTTTTAGTCTAATATTCGTTTTGACAGCAAGGCA
ACTACTTCTTCACTCCCAAAAGTACCCATAATTTCGGAGTGACGATGaaa
ttgtgatttatttttGCATGTTAAGAGCCAACGTATTACTTTTGTTTCAC
CCTCAAACACTTTTCgtttcgtttattttttctttaagaattATTTTTGT
TAATGTAATATTTCATACTGTAAGTTTACAAAAATCAACTTACACGATGA
TATATTTAATTCGATTTAATTCCAACTTTGTTAAGCTGGCTTTATATTAG
AAAAAATAAGCAAATACCTGTTTGCAATAAATTCAGATGATGTTTTTCTC
TCATCATCGCGCAGAAATATGAAAAATGGATCTTTCGTTTCGATTCCCAA
GGTTGTCTTGAAGTTcaataatttgcaaaaaaaaaattcggggTGAACCA
ATGATTGTCCAGTGGACACCCAGTTTTGCCACTAAGTATAATTTTCCTCT
CTCTTTTTTCAGGAAGTAGTGCATCAGCTGTAGCCCGTCATACACAGAAA
AATAAGAAACTGCTAGCTCGAGATCGGATTAAACTACTTGTAGACCAGGA
CTACCCTGTTTTGGAGCTAAGTGCTCTGGCTGGATTGGACATGGAGTATG
GGGACGTTTTGAGTGCTGGTATTGTGGGTTGTATAGCAAAAGTCAGTGGC
CAGCTATGCGTCATCAATGCTAATGATGCTACTGTCAAAGGTACTTTTTT
TTAACTAAAAGCATAACTAATATATTACACTAATATATTACACCATATTC
ATCAAGTATTTTAGATTCTCATAAGTAATCGATGTTAGAAACTTTTTGAT
TAGGGAAGGTATATTTATATGCCCAAGATAAATTTTAGCATGTGAACATG
TTCACACACTTACACTTAATTAATTTGATAACTTCTTGGAACctcacaaa
aaaatcagaacTTTCTTAGAAGAAACACGCCAATTAAATATACTGATTAT
TTTCTTATTCGTACACTAACATTACAGGTGGAACAATTTATCCCATCTCG
TTGAAGAAACAACTTCGTTTACAAGAGATTTGCGAACAGAACAATCTTCC
TGCTGTTTATCTCATCGATTCGGGTGGTGCTTTCTTGCCGTTACAATCAG
AAATTTTTGTTGAAGGTGGACGCTCTTTTTATAATGAAGCAATCATGAAC
TCCAAAGGAATTCCACAGGTATTGTTGCCCCTTTATTTATGAAACTTTTT
ATACAGGGGCATAAAGTTAGTACGTTATTAGAGCCCATAGTATAAAGGGT
AGAGTATCCGGCTACGATGCACAAGGTAAAGGTCAATCCTGGTCGGCTCA
TACCAAagacttgatgcctctctgtttGATGCTCTGCAACAGAATTTATC
AAGCTAGTTTAGTCATCGTGTCTGTGCGACCTGAAcgaggggtctgatcc
ccccttcttaaatgaccccccccccttcttggcatccccccaacctttaa
aaatgcctatcccccaagggttttgggctaaatNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNccccccccccttcttcacttttttggaaggtgtca
cccctccttaagaaagggggggtgTCCAAACTATGTACGGTCTGTCTCTG
AGACCACGCTCTGTTCTAAAGGGGTATAGCGAATGTGacgatctgacctg
gttgttcagccaaaacattcaaaactgcgtagctttttgcttgaaaacga
aagcgaaggCGGGTGGGTTCTAATCTTTATGTTTATGATTGGCTTTGATT
ATGGTGCGATTGTTTTGCTTCAGCCATTCTTcgcgctcaaaagctcattc
AATATTCAACCCAAATgtggatgaaaaagatcaaagcggtGCGCCAACCT
GGGTAGATTTTCTTACGGAGCCATGTCCTCTAAAGTGAATACGTGTCATG
CGCGGAgaatcagaatctgctcggagattacCACATTAGCATAAATATGT
TCAGCAAATATTTTTATCCAGTAAAATTCTTGCAAATTCATTTTGTGGTT
TGATAGAAGACTGataatttttcattcttttcagTTATGTATGGTTGCCG
GTTCGTGCACAGCTGGAGCGGCTTACATCCCTACAATGGCTAACGAAGTC
GTCATGGTTGACAAAATAGGAACTATTTTCTTGGCTGGTCCTCCACTAGT
GCACGCGGCTATCGGCCAACAAATCACAGAAGAAGCATTGGGTGGAGCCA
CGGTGCACTGTGAGGTTTCTGGATGTGCTGATTATAAAGCTAAAGATGAA
ATTGATGCTATAGATACGATGAAAGATGTTTTATCGACTTTGAACTTACC
AGAGTTCTTGCCGAAGTTGTCATTCGTTGAGGACCCGTTCTTTAATGAAG
AGGATCTGTCTATTTTGTCCGTAAAGCGTGACGcggacggaaaattagac
acaAAGAAGATTGTAGCACGCATTGTTGATGGAAGTCGTTTTCACGAATA
TAAACCAACTTATGGGCGTGAAATCATATGTGGATTTGCGCGACTGGGGA
GTATGCTTGTTGGTGTGGTCGCAAATGATGGGCGTTTCACGCCTCAATCT
TGTTTGAAAGCTTCCAATTTTGTTTGTCTGTGTGATGAAAGAGGAATCCC
TCTTGTGTTCCTTCAAGACATCTTGAAAGTCGAAAATGCGGAAACCGCGA
TAGAACTTATTAAGTATCAAGCTGAATTAATGTCGTACGTAGCTACAACT
CAAGTTCCAAAGATTACTATTATAATGGGAAACAGTTTTGGAGTTGGCAA
CTATGCTATGTGTGGTCGTAGCATGAGTCCACGATTCTTGTTTTCATGGC
CGACGGCCCGTGTTAGTATACATAGCGTTGATGACATGAAACAGACTATA
AATAATGATGAAAAGCACTTGCAGAGGCTAGAACGTGAAGTCACTTCTGT
TTATAGTTCGTCACGTATTTGGGATGATGGAATTGTTTTACCAAAAGATA
CACGGCAGGCTTTGATTCAATCTTTGACAGCTAGTATGATGCATAAGGAG
ACTAAGAAGTCTTCGAATAAAAATGTGGTCAGACTTTAAATAGAGTATTC
GCTAACGTAACGATATGTCGGAACGCGTTTGCAATAATTATTTTACCCTT
GATTTTATTCAGGGTCAGGTTGTAAATagtaatgattttatttttaaggt
tttattttttatacgtACTGTACGCTTCACACGACCTTTAAGAATAATTA
TGAATTTTAATGAAACTACAGTAGACTCCCAGTTATTCGAAGCTCCAAGG
GGGtaagaatttacttcgaataaccgggagttcgAATAATataactgaaa
aattcattttcctGTTAGATTCTCAACTTAGACTTAATTGGAGGGATTTT
TCTGAAGTAATTGAGACATTGTGGTTCAGTTGAGCGtaataaacacaaag
aaattgcTTGAATAGCAATATATAGCCATGAATATTGAAACCTGATTTAT
TAGAGAAAATTTCAATAGCAGAAAATCAATGTTCTCACTCGAAGATCTCC
CAATATGAACAATTAATTCGAATAACTGAGGCTGATTTAGCCTATAATGT
ATCCCCAGGGGAATAGAAATCGCTTCGAATAACTGAACGTTCAAATAACT
GAAGTTCGGATAACCGAGAGTGTTTTTGCCTGGGTTGAGTAAGCAGATCC
AAGGGGAACACCATCTCACTTCGAATAACCGGTAGTCTATTGTATGAATG
AAAGAAAAACTATAAAGATTTTGAATGGAATATCCGACTAGACGAATGGT
CACTAAAAAAAAACGATAAACATTAAAGCACTTAGAGTgcacagtttgaa
caaaaatatcctcTTTTGCTCCTCCCCCGGTTCGTTTCTAACTGcatctt
gaaagaaaaattgtgGTTTAAAGGCCAGACCACAGAAagaaaaacacctt
taaaaacCTTGTTTTATACGGgacaatttttcattattttatggATAATA
TTCAGTTCCAATTtcgcattttatttttaatcactTCTTTTTAGAATTAA
CAGGATAACTTATGAGTTATGATAggtaatttttgtaaataaaactTATG
GATTTTATGGATTCTTAacgttaaaatatttttgaagaattttcacttGA
TATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066894-exon-scaffold_462-1491911889:632561..632813 | TCONS_00066894-exon-scaffold_462-1491911889:632561..632813 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1510915933:632561..632813 | TCONS_00066894-exon-scaffold_462-1510915933:632561..632813 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1575043694:632561..632813 | TCONS_00066894-exon-scaffold_462-1575043694:632561..632813 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1491911889:633473..633700 | TCONS_00066894-exon-scaffold_462-1491911889:633473..633700 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1510915933:633473..633700 | TCONS_00066894-exon-scaffold_462-1510915933:633473..633700 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1575043694:633473..633700 | TCONS_00066894-exon-scaffold_462-1575043694:633473..633700 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1491911889:633988..634178 | TCONS_00066894-exon-scaffold_462-1491911889:633988..634178 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1510915933:633988..634178 | TCONS_00066894-exon-scaffold_462-1510915933:633988..634178 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1575043694:633988..634178 | TCONS_00066894-exon-scaffold_462-1575043694:633988..634178 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1491911889:635095..637167 | TCONS_00066894-exon-scaffold_462-1491911889:635095..637167 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1510915933:635095..637167 | TCONS_00066894-exon-scaffold_462-1510915933:635095..637167 | Clytia hemisphaerica | exon |
| TCONS_00066894-exon-scaffold_462-1575043694:635095..637167 | TCONS_00066894-exon-scaffold_462-1575043694:635095..637167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:632561..637167 + |
Blast
BLAST of TCONS_00066894 vs. Swiss-Prot (Human)
Match: MCCB (Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=MCCC2 PE=1 SV=1) HSP 1 Score: 393.66 bits (1010), Expect = 4.583e-125 Identity = 217/495 (43.84%), Postives = 307/495 (62.02%), Query Frame = 1
Query: 226 QEKLAQVMAGSSASAVARHTQKNKKLLARDRIKLLVDQDYPVLELSALAGLDM-EYGDVLSAGIVGCIAKVSGQLCVINANDATVKGGTIYPISLKKQLRLQEICEQNNLPAVYLIDSGGAFLPLQSEIFVEG---GRSFYNEAIMNSKGIPQLCMVAGSCTAGAAYIPTMANEVVMVDKIGTIFLAGPPLVHAAIGQQITEEALGGATVHCEVSGCADYKAKDEIDAIDTMKDVLSTLNLPEFLP-KLSFVEDPFFNEEDLSILSVKRDADGKLDTKKIVARIVDGSRFHEYKPTYGREIICGFARLGSMLVGVVANDGRFTPQSCLKASNFVCLCDERGIPLVFLQDI--LKVENAETAIELIKYQAELMSYVATTQVPKITIIMGNSFGVGNYAMCGRSMSPRFLFSWPTARVSI---HSVDDMKQTINNDEKH------------------LQRLEREVTSVYSSSRIWDDGIVLPKDTRQALIQSLTASM 1626
E++ + G A A H + K LL R+RI L+D P LELS AG + + +V GI+ I +VSG C+I ANDATVKGG YP+++KKQLR QEI QN LP +YL+DSGGA+LP Q+++F + GR+FYN+AIM+SK I Q+ +V GSCTAG AY+P MA+E ++V K GTIFLAGPPLV AA G++++ E LGGA +HC SG +D+ A D+ A+ + V+ LN + L + E+P F ++L + V + D ++++ARIVDGSRF E+K YG ++ GFAR+ VG+V N+G +S K ++FV LC +R IPL+FLQ+I V A + K A++++ VA QVPKIT+I+G S+G GNY MCGR+ SPRFL+ WP AR+S+ ++ TI D++ +++ E E YSS+R+WDDGI+ P DTR L S +A++
Sbjct: 57 HERVEHIKLGGGEKARALHISRGK-LLPRERIDNLIDPGSPFLELSQFAGYQLYDNEEVPGGGIITGIGRVSGVECMIIANDATVKGGAYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGAYLPRQADVFPDRDHFGRTFYNQAIMSSKNIAQIAVVMGSCTAGGAYVPAMADENIIVRKQGTIFLAGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDHWALDDHHALHLTRKVVRNLNYQKKLDVTIEPSEEPLFPADELYGI-VGANLKRSFDVREVIARIVDGSRFTEFKAFYGDTLVTGFARIFGYPVGIVGNNGVLFSESAKKGTHFVQLCCQRNIPLLFLQNITGFMVGREYEAEGIAKDGAKMVAAVACAQVPKITLIIGGSYGAGNYGMCGRAYSPRFLYIWPNARISVMGGEQAANVLATITKDQRAREGKQFSSADEAALKEPIIKKFEEEGNPYYSSARVWDDGIIDPADTRLVLGLSFSAAL 549
The following BLAST results are available for this feature:
|
