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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066898 ID=TCONS_00066898|Name=TCONS_00066898|organism=Clytia hemisphaerica|type=transcript|length=557bp
cTACTATTTTTCCAAATGagaaaagtttttaaagttGTCAGGAATGCAAT
ATGTGGTGAAAAGCTAGCTGTTTTGAATGATTTGATGACAGTAATGGTGG
AGAGTGAAGATAGATGCCTGAGCAACCTTTCACCAGCTAACCCCAATCTC
CAGAAACATCGATTACCGAATACTACAGCTACGACCAATGATCAATTGGA
CCGACCGGTTACAACACGCACTAAACATCATCAAACTCAAACAAGAAGGC
AACGTGTAACATCACCATCTGCCCCACCTCAAGAAGATGTTATCAACTCT
GGCGTTATCACATCTCTCTTTGACGTGGATTAACATTGACAATAAAAATC
TGGGCCTGCGAAAATTGACAGACACAAAGAATGGCCAATATCGTTCGATG
AATTGTTTGGTTTGGAAAAGCTCGTATGAAAAATCGACAAAAAGGAAACG
GAAACAAGTTTAGTACTTTTTTAATTgatcaaaaaattcaaacttttctt
ccTCGTTATGTAGAAATGATGTATATCGATGTAAATATGTATATTTATGA
TATTGGG Run BLAST on NCBI protein sequence of TCONS_00066898-protein >TCONS_00066898-protein ID=TCONS_00066898-protein|Name=TCONS_00066898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
LLFFQMRKVFKVVRNAICGEKLAVLNDLMTVMVESEDRCLSNLSPANPNL
QKHRLPNTTATTNDQLDRPVTTRTKHHQTQTRRQRVTSPSAPPQEDVINS
GVITSLFDVD Run BLAST on NCBI transcript from alignment at scaffold_462:683142..683877+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066898 ID=TCONS_00066898|Name=TCONS_00066898|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at scaffold_462:683142..683877+ (Clytia hemisphaerica)
cTACTATTTTTCCAAATGagaaaagtttttaaagttGTCAGGAATGCAAT
ATGTGGTGAAAAGCTAGCTGTTTTGAATGATTTGATGACAGTAATGGTGG
AGAGTGAAGATAGATGCCTGAGGTAAGTTTAAAGGAATTTCATTCTAGCC
ACCCCTTCGGGGGTAGGATACTTCATAGGATAGGATGCTATCGAAAAATG
TGAAAGGTACACCGAAATCTCATTTCAATAGAAgagaaaaaattcgaaaa
tcccCACACTGAGCAAGAGAGTTATCTATATGTATTTTCATTTACTTCTA
GCAACCTTTCACCAGCTAACCCCAATCTCCAGAAACATCGATTACCGAAT
ACTACAGCTACGACCAATGATCAATTGGACCGACCGGTTACAACACGCAC
TAAACATCATCAAACTCAAACAAGAAGGCAACGTGTAACATCACCATCTG
CCCCACCTCAAGAAGATGTTATCAACTCTGGCGTTATCACATCTCTCTTT
GACGTGGATTAACATTGACAATAAAAATCTGGGCCTGCGAAAATTGACAG
ACACAAAGAATGGCCAATATCGTTCGATGAATTGTTTGGTTTGGAAAAGC
TCGTATGAAAAATCGACAAAAAGGAAACGGAAACAAGTTTAGTACTTTTT
TAATTgatcaaaaaattcaaacttttcttccTCGTTATGTAGAAATGATG
TATATCGATGTAAATATGTATATTTATGATATTGGG Coding sequence (CDS) from alignment at scaffold_462:683142..683877+ >TCONS_00066898 ID=TCONS_00066898|Name=TCONS_00066898|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_462:683142..683877+ (Clytia hemisphaerica)
cTACTATTTTTCCAAATGagaaaagtttttaaagttGTCAGGAATGCAAT
ATGTGGTGAAAAGCTAGCTGTTTTGAATGATTTGATGACAGTAATGGTGG
AGAGTGAAGATAGATGCCTGAGCAACCTTTCACCAGCTAACCCCAATCTC
CAGAAACATCGATTACCGAATACTACAGCTACGACCAATGATCAATTGGA
CCGACCGGTTACAACACGCACTAAACATCATCAAACTCAAACAAGAAGGC
AACGTGTAACATCACCATCTGCCCCACCTCAAGAAGATGTTATCAACTCT
GGCGTTATCACATCTCTCTTTGACGTGGATTAAcTACTATTTTTCCAAAT
GagaaaagtttttaaagttGTCAGGAATGCAATATGTGGTGAAAAGCTAG
CTGTTTTGAATGATTTGATGACAGTAATGGTGGAGAGTGAAGATAGATGC
CTGAGCAACCTTTCACCAGCTAACCCCAATCTCCAGAAACATCGATTACC
GAATACTACAGCTACGACCAATGATCAATTGGACCGACCGGTTACAACAC
GCACTAAACATCATCAAACTCAAACAAGAAGGCAACGTGTAACATCACCA
TCTGCCCCACCTCAAGAAGATGTTATCAACTCTGGCGTTATCACATCTCT
CTTTGACGTGGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066898-exon-scaffold_462-1491911889:683142..683263 | TCONS_00066898-exon-scaffold_462-1491911889:683142..683263 | Clytia hemisphaerica | exon |
| TCONS_00066898-exon-scaffold_462-1510915933:683142..683263 | TCONS_00066898-exon-scaffold_462-1510915933:683142..683263 | Clytia hemisphaerica | exon |
| TCONS_00066898-exon-scaffold_462-1575043694:683142..683263 | TCONS_00066898-exon-scaffold_462-1575043694:683142..683263 | Clytia hemisphaerica | exon |
| TCONS_00066898-exon-scaffold_462-1491911889:683443..683877 | TCONS_00066898-exon-scaffold_462-1491911889:683443..683877 | Clytia hemisphaerica | exon |
| TCONS_00066898-exon-scaffold_462-1510915933:683443..683877 | TCONS_00066898-exon-scaffold_462-1510915933:683443..683877 | Clytia hemisphaerica | exon |
| TCONS_00066898-exon-scaffold_462-1575043694:683443..683877 | TCONS_00066898-exon-scaffold_462-1575043694:683443..683877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:683142..683877 + |
Blast
The following BLAST results are available for this feature:
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