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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066901 ID=TCONS_00066901|Name=TCONS_00066901|organism=Clytia hemisphaerica|type=transcript|length=1915bpRun BLAST on NCBI transcript from alignment at scaffold_462:768212..779505+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066901 ID=TCONS_00066901|Name=TCONS_00066901|organism=Clytia hemisphaerica|type=transcript|length=11294bp|location=Sequence derived from alignment at scaffold_462:768212..779505+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066901 vs. Swiss-Prot (Human)
Match: IQCB1 (IQ calmodulin-binding motif-containing protein 1 OS=Homo sapiens GN=IQCB1 PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.231e-41 Identity = 153/578 (26.47%), Postives = 280/578 (48.44%), Query Frame = 2
Query: 80 NSQIANLARDILDADDFAKPSLLLKLKEI---TSSQSQDQEITLIEIWRCRLPNAVIQALRLDFTKVSGMWLTACQLINTAVECCF-FNPRY-LQEIKKEYIPALIQESLNICRSIVKEYQTSSDMFKINLCANLSWIIT-SINTLMKXXXXXXXXXXASKHFLQFLMSEDDRIXXXXXXXXKNIIETNSDVFYHAAESRMHNVADELAYKISSTKDKKVARMTVXXXXXXXXXXXXXXXXFVTKR--YRGFKMYLNKWK-GNGFDENIEYIMGMLEEKAEKMKSSQRHHNAAIVIQSFYRGCKTRNKLKTATLAMSKFQQSYRKKIETKQTLDEKKRLDKVKKDHDERQRRKGFVK-----SKTKQLQSIEGIPAKTVDTFLDNLQQESARKIQASWSGWKTRKVMREIAPHLVKEKAAILLQRQIRRWLEKVRKVKQDARLDMIPDGLNDERRIELSNVLVN-IREKF--PKVDVSDEELIQGHLKANQMLNNHVIGLXXXXXXXXXXXALIGQLTIQSETLSRMPNLSSANEMTLEQLASRSTPVMVAARKQHVEFINDLKRPWWDRLSDESAVE 1762
+ +I ++A ++ + + P +LLKLKEI T S + + +I+ L + L D++++ G W T QL CC P +E E +P+ + L + R + + ++ + + + I+T S+ L+ V + V+ S HFL L +++ +I + +L+NI++ NS ++++ DE+ +K+ ST V R T + LL L+ + + + + Y+G + L+K + G F + + ++G+L + Q+ H AA +IQ++++G +TR +LK A+ Q+S+R K +K L+ +++ K++ D + + + + S+ QL +E + V+ ++++SA IQ W G++ RK + L++ KAA+ LQR ++L K RK K+ L D RR+EL + + +R P DV EL H +A + L ++ +G R HR ALI Q++ E L + P+L A E SRS PV A++ H+ + ++ PWW +L +ES E
Sbjct: 7 DPRILSIAAEVAKSPEQNVPVILLKLKEIINITPLGSSELKKIKQDIYCYDLIQYCLLVLSQDYSRIQGGWTTISQLTQILSHCCVGLEPGEDAEEFYNELLPSAAENFLVLGRQLQTCFINAAKAEEKDELLHFFQIVTDSLFWLLGGHVELIQNVLQSDHFLHLLQADNVQIGSAVMMMLQNILQINSGDLLRIGRKALYSILDEVIFKLFSTPSP-VIRSTATKLLLLMAESHQEILILLRQSTCYKGLRRLLSKQETGTEFSQELRQLVGLLSPMVYQEVEEQKLHQAACLIQAYWKGFQTRKRLKKLPSAVIALQRSFRSK-RSKMLLE----INRQKEEEDLKLQLQLQRQRAMRLSRELQLSMLEIVHPGQVEKHYREMEEKSALIIQKHWRGYRERKNFHQQRQSLIEYKAAVTLQRAALKFLAKCRKKKKLFAPWRGLQELTDARRVELKKRVDDYVRRHLGSPMSDVVSREL---HAQAQERLQHYFMGRALEERAQQHREALIAQISTNVEQLMKAPSLKEAEGKEPELFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEESGDE 575 The following BLAST results are available for this feature:
BLAST of TCONS_00066901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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