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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067035 ID=TCONS_00067035|Name=TCONS_00067035|organism=Clytia hemisphaerica|type=transcript|length=1662bp
NAAGGGTAGTGGTAAAGGCAACAAGGGTAGTGAAGGTAGTCAAAATGGTG
GTGGAGGTGGCAGCTCCCGAAATTTGCTTAATCCCACCGGAAGACAAGAC
AACAAAATCAGGTGTTCATATTGTCGAGGTGAACATAGCTCTGCAAAATG
TGATATCGTTCAAGACGTAAATACCCGATGGAAATATGTGAAACGCAATC
ATCTCCGTTTCAACTGTCTAGCAAAGAACCATGGTTTGAAAGAAGGTACG
AAAAGGAGTTGCAGAAATTGTGAGGAGAAACATCATGAAAGTTTGTGTCA
GGGAACGCCTTCGACTGGGCTGATTGCAAGGGCAAAAAAGTTGACACTCT
TACAGACAGCGAAAGTAAAGGTCTGCCACCCTAACGACAACAATCAAGTA
AGTAAAGTACGTATTGTATTCGACATGGGATCAAATGACAGCTATATCAC
CAAAAGTATCAAGGACAAATTGAAACTACCCATTCTTGGTAAACACAAGA
TGGTCATCTCAGGTTTTGGTGGGTCGTCTAAAGGCTCAAAGGAGTATGAC
ATGACTGTTTNCTCAGGTTTTGGTGGGTCGTCTAAAGGCTCGAAGGAGTA
TGACATGACTGCTTTAAATTTAAAGAGTCGTTTTGGTGGTGGTTCTTTTC
CTCTCTCTGCTTTAGTTGTTCCGACGATAACATCTTCTCCCTTAAATCCT
TCTGTAGAATTTCAACATTTGGAACATTTAGCTTCTCTCGATCTTGCAGA
TGACTTTACTCCACCACAAGAGGAGATTTGTCTGTTGATAGGGGTTGATC
AGTACCATCGCTTTGTTAGTGGAGAAACCGTACGTCGTTCTTCTGGACCC
GTTGCAACTAAATCTGTGTTTGGATGGTTAGTTAGTGGTCCAATAGAGGG
TACATCCTCCTCCTTCTCTAACTCCCTTCTTCTCTCTTCCCAAACTCCTT
CTATTGACGAACGTCTTTCTCGCTTCTGGGACCTTGAATCAATGGGTATT
GTTGATGAGTCGATTGATGAGGTAATGACGAAAGAATTCAAAGACTCCAT
TGTCCATAACGGAGAGAGATACGAAGTTCCTCTTCCAAGAAAGGATGTAC
ATCCTGATCTCCAGGATAACTTTTCTGTTGCCAAACAACGTCTTTTTGGA
CTAAAGAAGAAATTCAATCATAACCTGACCTCAAAGCACAATAcaaccaa
tattttgaagaTCAGCTTGAACAAAATAACATCGAAAAAGTANCAATAca
accaatattttgaagaTCAGCTTGAACAAAATATCATCGAAAAAGTTGAC
ACAAAAGACCATGGAAAGCAAGGCTGGACACATTATCTTCCACATCATTG
TGTCATTCGTGAGGACcgagaaacaacaaaaatgagaATTGTGTTTGATG
CCTCCTGTCAATCGAATGACAATCCTTCTCTAAATCAGTGTTTAGAAACT
GGTCCATCTTTGAATCCTGAGCTTTTGATATTCTTTTACGTTTCCGTCTT
TTTCCAATCGCACTTGTTAGTGATATTGAAAAGGCTTTCCATATGATCAT
TCTGCAGGCTCATCAAAAGGTCAAACATTCAGGTGTCGCAGCAACTCTAG
CTGAAGTCAGATCTAGATTTTGGATTCCGCAAGGTCGTCAATTCGTGAAG
AAAATCTTGANN Run BLAST on NCBI protein sequence of TCONS_00067035-protein >TCONS_00067035-protein ID=TCONS_00067035-protein|Name=TCONS_00067035-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
KGSGKGNKGSEGSQNGGGGGSSRNLLNPTGRQDNKIRCSYCRGEHSSAKC
DIVQDVNTRWKYVKRNHLRFNCLAKNHGLKEGTKRSCRNCEEKHHESLCQ
GTPSTGLIARAKKLTLLQTAKVKVCHPNDNNQVSKVRIVFDMGSNDSYIT
KSIKDKLKLPILGKHKMVISGFGGSSKGSKEYDMTVXSGFGGSSKGSKEY
DMTALNLKSRFGGGSFPLSALVVPTITSSPLNPSVEFQHLEHLASLDLAD
DFTPPQEEICLLIGVDQYHRFVSGETVRRSSGPVATKSVFGWLVSGPIEG
TSSSFSNSLLLSSQTPSIDERLSRFWDLESMGIVDESIDEVMTKEFKDSI
VHNGERYEVPLPRKDVHPDLQDNFSVAKQRLFGLKKKFNHNLTSKHNTTN
ILKISLNKITSKKXQYNQYFEDQLEQNIIEKVDTKDHGKQGWTHYLPHHC
VIREDRETTKMRIVFDASCQSNDNPSLNQCLETGPSLNPELLIFFYVSVF
FQSHLLVILKRLSI Run BLAST on NCBI transcript from alignment at scaffold_462:336827..338488 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067035 ID=TCONS_00067035|Name=TCONS_00067035|organism=Clytia hemisphaerica|type=transcript|length=1662bp|location=Sequence derived from alignment at scaffold_462:336827..338488 (Clytia hemisphaerica)
NNTCAAGATTTTCTTCACGAATTGACGACCTTGCGGAATCCAAAATCTAG
ATCTGACTTCAGCTAGAGTTGCTGCGACACCTGAATGTTTGACCTTTTGA
TGAGCCTGCAGAATGATCATATGGAAAGCCTTTTCAATATCACTAACAAG
TGCGATTGGAAAAAGACGGAAACGTAAAAGAATATCAAAAGCTCAGGATT
CAAAGATGGACCAGTTTCTAAACACTGATTTAGAGAAGGATTGTCATTCG
ATTGACAGGAGGCATCAAACACAATtctcatttttgttgtttctcgGTCC
TCACGAATGACACAATGATGTGGAAGATAATGTGTCCAGCCTTGCTTTCC
ATGGTCTTTTGTGTCAACTTTTTCGATGATATTTTGTTCAAGCTGAtctt
caaaatattggttgTATTGNTACTTTTTCGATGTTATTTTGTTCAAGCTG
AtcttcaaaatattggttgTATTGTGCTTTGAGGTCAGGTTATGATTGAA
TTTCTTCTTTAGTCCAAAAAGACGTTGTTTGGCAACAGAAAAGTTATCCT
GGAGATCAGGATGTACATCCTTTCTTGGAAGAGGAACTTCGTATCTCTCT
CCGTTATGGACAATGGAGTCTTTGAATTCTTTCGTCATTACCTCATCAAT
CGACTCATCAACAATACCCATTGATTCAAGGTCCCAGAAGCGAGAAAGAC
GTTCGTCAATAGAAGGAGTTTGGGAAGAGAGAAGAAGGGAGTTAGAGAAG
GAGGAGGATGTACCCTCTATTGGACCACTAACTAACCATCCAAACACAGA
TTTAGTTGCAACGGGTCCAGAAGAACGACGTACGGTTTCTCCACTAACAA
AGCGATGGTACTGATCAACCCCTATCAACAGACAAATCTCCTCTTGTGGT
GGAGTAAAGTCATCTGCAAGATCGAGAGAAGCTAAATGTTCCAAATGTTG
AAATTCTACAGAAGGATTTAAGGGAGAAGATGTTATCGTCGGAACAACTA
AAGCAGAGAGAGGAAAAGAACCACCACCAAAACGACTCTTTAAATTTAAA
GCAGTCATGTCATACTCCTTCGAGCCTTTAGACGACCCACCAAAACCTGA
GNAAACAGTCATGTCATACTCCTTTGAGCCTTTAGACGACCCACCAAAAC
CTGAGATGACCATCTTGTGTTTACCAAGAATGGGTAGTTTCAATTTGTCC
TTGATACTTTTGGTGATATAGCTGTCATTTGATCCCATGTCGAATACAAT
ACGTACTTTACTTACTTGATTGTTGTCGTTAGGGTGGCAGACCTTTACTT
TCGCTGTCTGTAAGAGTGTCAACTTTTTTGCCCTTGCAATCAGCCCAGTC
GAAGGCGTTCCCTGACACAAACTTTCATGATGTTTCTCCTCACAATTTCT
GCAACTCCTTTTCGTACCTTCTTTCAAACCATGGTTCTTTGCTAGACAGT
TGAAACGGAGATGATTGCGTTTCACATATTTCCATCGGGTATTTACGTCT
TGAACGATATCACATTTTGCAGAGCTATGTTCACCTCGACAATATGAACA
CCTGATTTTGTTGTCTTGTCTTCCGGTGGGATTAAGCAAATTTCGGGAGC
TGCCACCTCCACCACCATTTTGACTACCTTCACTACCCTTGTTGCCTTTA
CCACTACCCTTN Coding sequence (CDS) from alignment at scaffold_462:336827..338488 >TCONS_00067035 ID=TCONS_00067035|Name=TCONS_00067035|organism=Clytia hemisphaerica|type=CDS|length=1545bp|location=Sequence derived from alignment at scaffold_462:336827..338488 (Clytia hemisphaerica)
TCATATGGAAAGCCTTTTCAATATCACTAACAAGTGCGATTGGAAAAAGA
CGGAAACGTAAAAGAATATCAAAAGCTCAGGATTCAAAGATGGACCAGTT
TCTAAACACTGATTTAGAGAAGGATTGTCATTCGATTGACAGGAGGCATC
AAACACAATtctcatttttgttgtttctcgGTCCTCACGAATGACACAAT
GATGTGGAAGATAATGTGTCCAGCCTTGCTTTCCATGGTCTTTTGTGTCA
ACTTTTTCGATGATATTTTGTTCAAGCTGAtcttcaaaatattggttgTA
TTGNTACTTTTTCGATGTTATTTTGTTCAAGCTGAtcttcaaaatattgg
ttgTATTGTGCTTTGAGGTCAGGTTATGATTGAATTTCTTCTTTAGTCCA
AAAAGACGTTGTTTGGCAACAGAAAAGTTATCCTGGAGATCAGGATGTAC
ATCCTTTCTTGGAAGAGGAACTTCGTATCTCTCTCCGTTATGGACAATGG
AGTCTTTGAATTCTTTCGTCATTACCTCATCAATCGACTCATCAACAATA
CCCATTGATTCAAGGTCCCAGAAGCGAGAAAGACGTTCGTCAATAGAAGG
AGTTTGGGAAGAGAGAAGAAGGGAGTTAGAGAAGGAGGAGGATGTACCCT
CTATTGGACCACTAACTAACCATCCAAACACAGATTTAGTTGCAACGGGT
CCAGAAGAACGACGTACGGTTTCTCCACTAACAAAGCGATGGTACTGATC
AACCCCTATCAACAGACAAATCTCCTCTTGTGGTGGAGTAAAGTCATCTG
CAAGATCGAGAGAAGCTAAATGTTCCAAATGTTGAAATTCTACAGAAGGA
TTTAAGGGAGAAGATGTTATCGTCGGAACAACTAAAGCAGAGAGAGGAAA
AGAACCACCACCAAAACGACTCTTTAAATTTAAAGCAGTCATGTCATACT
CCTTCGAGCCTTTAGACGACCCACCAAAACCTGAGNAAACAGTCATGTCA
TACTCCTTTGAGCCTTTAGACGACCCACCAAAACCTGAGATGACCATCTT
GTGTTTACCAAGAATGGGTAGTTTCAATTTGTCCTTGATACTTTTGGTGA
TATAGCTGTCATTTGATCCCATGTCGAATACAATACGTACTTTACTTACT
TGATTGTTGTCGTTAGGGTGGCAGACCTTTACTTTCGCTGTCTGTAAGAG
TGTCAACTTTTTTGCCCTTGCAATCAGCCCAGTCGAAGGCGTTCCCTGAC
ACAAACTTTCATGATGTTTCTCCTCACAATTTCTGCAACTCCTTTTCGTA
CCTTCTTTCAAACCATGGTTCTTTGCTAGACAGTTGAAACGGAGATGATT
GCGTTTCACATATTTCCATCGGGTATTTACGTCTTGAACGATATCACATT
TTGCAGAGCTATGTTCACCTCGACAATATGAACACCTGATTTTGTTGTCT
TGTCTTCCGGTGGGATTAAGCAAATTTCGGGAGCTGCCACCTCCACCACC
ATTTTGACTACCTTCACTACCCTTGTTGCCTTTACCACTACCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067035-exon-scaffold_462-1491911889:336827..338488 | TCONS_00067035-exon-scaffold_462-1491911889:336827..338488 | Clytia hemisphaerica | exon |
| TCONS_00067035-exon-scaffold_462-1510915933:336827..338488 | TCONS_00067035-exon-scaffold_462-1510915933:336827..338488 | Clytia hemisphaerica | exon |
| TCONS_00067035-exon-scaffold_462-1575043694:336827..338488 | TCONS_00067035-exon-scaffold_462-1575043694:336827..338488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:336827..338488 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008737 | Peptidase_asp_put |
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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