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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067043 ID=TCONS_00067043|Name=TCONS_00067043|organism=Clytia hemisphaerica|type=transcript|length=1403bp
ccTTAAAATATATCTTTCGTATAAATTATCTCGTTAGAATGAGTGATATA
AAAGAATTTTATTGATTTGAGAGAGAGAGTATCTTGGATCATTGCCAATT
ATGACCATGAATTTAGAATCTGAATGACATGCATAATCTGATATTCTAAA
ACGTTCCCCATTTTCGAGCTTCACATTTTCGGTTGAAAATTGATCACCAG
TAAAAAGTAAgtaaaccactcaaaacgaattCTGATCCGAATTTGTCCTG
TTGAATGAAGAATCTGTTAACATTTAAGTTAAATGAGAAAGACTTGTCAT
AATATTCAACATTAGTCGGTGTATCACTTCCAAATACAAGatattttgaa
tgtaaaaaatctATCGAGTTCTGACAAGTAATTTTGACCTGACAATTGGG
GATATCATTAATCAAAAGATTTGTAATATTGAATCCGTAATTTAAACAGA
ATAAAATTCACTTTGACATTCTGAACATTACTGGATAAATGTGGCGTCAA
TTTAATATGCGTCAGTTTTTAAAAGAGCCTCTTCTCGGGTTTAACCTGCT
CGAACCACGCGTTGCTAAATTAGGGAATGGCATAAAGtcattttttccat
cctccCCATTTTTCCGGGCCTCGATTTTCATTTGCGCTTTTTTTCTCAGC
GCCATTAAGTTCATTTTCAATTTGATAGTTGTCTTTATGGAAGGTAGTTG
CATCTTTCTGTTAGCCACTACTGCAGATCCTAGTCTAGCTCTTGGCTGTG
GAACTCCTAGATTAGTAGGCGAGGTTCCTAAAGAGCTAGCCTTAAAGACG
TTCGGTTCAGAGAGTGACTTTTTGAAACTTGGAACTGATTTTGAACGGCT
TTTTAGAGCTCTATCAGATAAAATTCGATCAATTTGGTCctccattttga
agttttgttCTTGTATTGCATCGCGTTGACGAACAAATCCTTTCAACTCT
GAATTCAAGTTTCTAAGTCTTTGCTGCAAGGTGACAAGTTCTTGATTCAA
AGCTTTTCTCTGCGCTTCATCTTTCGCTAAATCGTAACTACCAACAAAAT
TATTGTTAGATGTTGATTCTTTGCGAATTTCTTCAACCATTTTTAGTCTT
TTAAGCGTGTTTTTCTGTTTCCATAAATCGTTACGAGCGCATTGGTATTG
ATATTTGACAACGCTGTATTCGAATTTCAATTCTTTATCATCCATCCTTT
GAACCTTTTTTGtttattgtaaaatttgataaatctGAAATCCCCGTTTC
TTGATCCTGGTGAAAGTCTTTTCTTCGATACTAAAAatccaaccaaaaaa
aaaaaaaaatttggagtCTGTAATTGTTCATGTAGTTATGGCACTGctct
tgatttttttacgtTTATTATCAAAAACGCAATTGCAAAGTCTAATGCTT
TAC Run BLAST on NCBI protein sequence of TCONS_00067043-protein >TCONS_00067043-protein ID=TCONS_00067043-protein|Name=TCONS_00067043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MDDKELKFEYSVVKYQYQCARNDLWKQKNTLKRLKMVEEIRKESTSNNNF
VGSYDLAKDEAQRKALNQELVTLQQRLRNLNSELKGFVRQRDAIQEQNFK
MEDQIDRILSDRALKSRSKSVPSFKKSLSEPNVFKASSLGTSPTNLGVPQ
PRARLGSAVVANRKMQLPSIKTTIKLKMNLMALRKKAQMKIEARKNGEDG
KNDFMPFPNLATRGSSRLNPRRGSFKN Run BLAST on NCBI transcript from alignment at scaffold_462:488519..489921 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067043 ID=TCONS_00067043|Name=TCONS_00067043|organism=Clytia hemisphaerica|type=transcript|length=1403bp|location=Sequence derived from alignment at scaffold_462:488519..489921 (Clytia hemisphaerica)
GTAAAGCATTAGACTTTGCAATTGCGTTTTTGATAATAAacgtaaaaaaa
tcaagagCAGTGCCATAACTACATGAACAATTACAGactccaaatttttt
tttttttttggttggatTTTTAGTATCGAAGAAAAGACTTTCACCAGGAT
CAAGAAACGGGGATTTCagatttatcaaattttacaataaaCAAAAAAGG
TTCAAAGGATGGATGATAAAGAATTGAAATTCGAATACAGCGTTGTCAAA
TATCAATACCAATGCGCTCGTAACGATTTATGGAAACAGAAAAACACGCT
TAAAAGACTAAAAATGGTTGAAGAAATTCGCAAAGAATCAACATCTAACA
ATAATTTTGTTGGTAGTTACGATTTAGCGAAAGATGAAGCGCAGAGAAAA
GCTTTGAATCAAGAACTTGTCACCTTGCAGCAAAGACTTAGAAACTTGAA
TTCAGAGTTGAAAGGATTTGTTCGTCAACGCGATGCAATACAAGaacaaa
acttcaaaatggagGACCAAATTGATCGAATTTTATCTGATAGAGCTCTA
AAAAGCCGTTCAAAATCAGTTCCAAGTTTCAAAAAGTCACTCTCTGAACC
GAACGTCTTTAAGGCTAGCTCTTTAGGAACCTCGCCTACTAATCTAGGAG
TTCCACAGCCAAGAGCTAGACTAGGATCTGCAGTAGTGGCTAACAGAAAG
ATGCAACTACCTTCCATAAAGACAACTATCAAATTGAAAATGAACTTAAT
GGCGCTGAGAAAAAAAGCGCAAATGAAAATCGAGGCCCGGAAAAATGGgg
aggatggaaaaaatgaCTTTATGCCATTCCCTAATTTAGCAACGCGTGGT
TCGAGCAGGTTAAACCCGAGAAGAGGCTCTTTTAAAAACTGACGCATATT
AAATTGACGCCACATTTATCCAGTAATGTTCAGAATGTCAAAGTGAATTT
TATTCTGTTTAAATTACGGATTCAATATTACAAATCTTTTGATTAATGAT
ATCCCCAATTGTCAGGTCAAAATTACTTGTCAGAACTCGATagatttttt
acattcaaaatatCTTGTATTTGGAAGTGATACACCGACTAATGTTGAAT
ATTATGACAAGTCTTTCTCATTTAACTTAAATGTTAACAGATTCTTCATT
CAACAGGACAAATTCGGATCAGaattcgttttgagtggtttacTTACTTT
TTACTGGTGATCAATTTTCAACCGAAAATGTGAAGCTCGAAAATGGGGAA
CGTTTTAGAATATCAGATTATGCATGTCATTCAGATTCTAAATTCATGGT
CATAATTGGCAATGATCCAAGATACTCTCTCTCTCAAATCAATAAAATTC
TTTTATATCACTCATTCTAACGAGATAATTTATACGAAAGATATATTTTA
Agg Coding sequence (CDS) from alignment at scaffold_462:488519..489921 >TCONS_00067043 ID=TCONS_00067043|Name=TCONS_00067043|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_462:488519..489921 (Clytia hemisphaerica)
ATGGATGATAAAGAATTGAAATTCGAATACAGCGTTGTCAAATATCAATA
CCAATGCGCTCGTAACGATTTATGGAAACAGAAAAACACGCTTAAAAGAC
TAAAAATGGTTGAAGAAATTCGCAAAGAATCAACATCTAACAATAATTTT
GTTGGTAGTTACGATTTAGCGAAAGATGAAGCGCAGAGAAAAGCTTTGAA
TCAAGAACTTGTCACCTTGCAGCAAAGACTTAGAAACTTGAATTCAGAGT
TGAAAGGATTTGTTCGTCAACGCGATGCAATACAAGaacaaaacttcaaa
atggagGACCAAATTGATCGAATTTTATCTGATAGAGCTCTAAAAAGCCG
TTCAAAATCAGTTCCAAGTTTCAAAAAGTCACTCTCTGAACCGAACGTCT
TTAAGGCTAGCTCTTTAGGAACCTCGCCTACTAATCTAGGAGTTCCACAG
CCAAGAGCTAGACTAGGATCTGCAGTAGTGGCTAACAGAAAGATGCAACT
ACCTTCCATAAAGACAACTATCAAATTGAAAATGAACTTAATGGCGCTGA
GAAAAAAAGCGCAAATGAAAATCGAGGCCCGGAAAAATGGggaggatgga
aaaaatgaCTTTATGCCATTCCCTAATTTAGCAACGCGTGGTTCGAGCAG
GTTAAACCCGAGAAGAGGCTCTTTTAAAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067043-exon-scaffold_462-1491911889:488519..489921 | TCONS_00067043-exon-scaffold_462-1491911889:488519..489921 | Clytia hemisphaerica | exon |
| TCONS_00067043-exon-scaffold_462-1510915933:488519..489921 | TCONS_00067043-exon-scaffold_462-1510915933:488519..489921 | Clytia hemisphaerica | exon |
| TCONS_00067043-exon-scaffold_462-1575043694:488519..489921 | TCONS_00067043-exon-scaffold_462-1575043694:488519..489921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:488519..489921 . |
Blast
The following BLAST results are available for this feature:
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