TCONS_00067170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067170
Unique NameTCONS_00067170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067170 ID=TCONS_00067170|Name=TCONS_00067170|organism=Clytia hemisphaerica|type=transcript|length=534bp
TTTTTGGATGGATTGTATAATCAAACGCTTGATTTGTGAAAAAATGTTTG
TACATGACAGGAAaattaatgaagcaattttgcaagGGTCGATTGAATCA
AGTTCTATCAGCTTTGCAGCAAAAGCATCTTCACTATCAATATCAATGTT
TGTTTTAGCCTCAAACTTAAGTTTTTTATTTGGAACTGGTCGTCTGGAAG
GTGACAACACAACATCAGTTACTTTGAGGCACCTCTTAGTTGTTGTTGTT
AAATTCATTTCGTCATTCACTCTTTGGCATTTGGTTTTGAACTGAATCAC
TTTTTCGACAAAGGCTTCACAAGCTGTACAAATCGTGCTTGGCAACTCAT
CATCACATTTTATGAGGATGCCACAACACTGTTCAATTTTTGAAACAAGA
TTCTTTTTTGTTCCAACATTTGACAATACTTTCTGATAccttgttttttc
ttcgccacATAGCCTGCAACAGTTGAGCTTCGATGAATCAACACTTCGAG
CATACTTTTTCGTTGGAGTCTTCTCCACCGCCAC
Run BLAST on NCBI

protein sequence of TCONS_00067170-protein

>TCONS_00067170-protein ID=TCONS_00067170-protein|Name=TCONS_00067170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
VAVEKTPTKKYARSVDSSKLNCCRLCGEEKTRYQKVLSNVGTKKNLVSKI
EQCCGILIKCDDELPSTICTACEAFVEKVIQFKTKCQRVNDEMNLTTTTK
RCLKVTDVVLSPSRRPVPNKKLKFEAKTNIDIDSEDAFAAKLIELDSIDP
CKIASLIFLSCTNIFSQIKRLIIQSIQK
Run BLAST on NCBI

transcript from alignment at scaffold_464:330100..330633

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067170 ID=TCONS_00067170|Name=TCONS_00067170|organism=Clytia hemisphaerica|type=transcript|length=534bp|location=Sequence derived from alignment at scaffold_464:330100..330633 (Clytia hemisphaerica)
GTGGCGGTGGAGAAGACTCCAACGAAAAAGTATGCTCGAAGTGTTGATTC
ATCGAAGCTCAACTGTTGCAGGCTATgtggcgaagaaaaaacaaggTATC
AGAAAGTATTGTCAAATGTTGGAACAAAAAAGAATCTTGTTTCAAAAATT
GAACAGTGTTGTGGCATCCTCATAAAATGTGATGATGAGTTGCCAAGCAC
GATTTGTACAGCTTGTGAAGCCTTTGTCGAAAAAGTGATTCAGTTCAAAA
CCAAATGCCAAAGAGTGAATGACGAAATGAATTTAACAACAACAACTAAG
AGGTGCCTCAAAGTAACTGATGTTGTGTTGTCACCTTCCAGACGACCAGT
TCCAAATAAAAAACTTAAGTTTGAGGCTAAAACAAACATTGATATTGATA
GTGAAGATGCTTTTGCTGCAAAGCTGATAGAACTTGATTCAATCGACCct
tgcaaaattgcttcattaattTTCCTGTCATGTACAAACATTTTTTCACA
AATCAAGCGTTTGATTATACAATCCATCCAAAAA

Coding sequence (CDS) from alignment at scaffold_464:330100..330633

>TCONS_00067170 ID=TCONS_00067170|Name=TCONS_00067170|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_464:330100..330633 (Clytia hemisphaerica)
GTGGCGGTGGAGAAGACTCCAACGAAAAAGTATGCTCGAAGTGTTGATTC
ATCGAAGCTCAACTGTTGCAGGCTATgtggcgaagaaaaaacaaggTATC
AGAAAGTATTGTCAAATGTTGGAACAAAAAAGAATCTTGTTTCAAAAATT
GAACAGTGTTGTGGCATCCTCATAAAATGTGATGATGAGTTGCCAAGCAC
GATTTGTACAGCTTGTGAAGCCTTTGTCGAAAAAGTGATTCAGTTCAAAA
CCAAATGCCAAAGAGTGAATGACGAAATGAATTTAACAACAACAACTAAG
AGGTGCCTCAAAGTAACTGATGTTGTGTTGTCACCTTCCAGACGACCAGT
TCCAAATAAAAAACTTAAGTTTGAGGCTAAAACAAACATTGATATTGATA
GTGAAGATGCTTTTGCTGCAAAGCTGATAGAACTTGATTCAATCGACCct
tgcaaaattgcttcattaattTTCCTGTCATGTACAAACATTTTTTCACA
AATCAAGCGTTTGATTATACAATCCATCCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041967XLOC_041967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067170-exon-scaffold_464-1491911889:330100..330633TCONS_00067170-exon-scaffold_464-1491911889:330100..330633Clytia hemisphaericaexon
TCONS_00067170-exon-scaffold_464-1510915933:330100..330633TCONS_00067170-exon-scaffold_464-1510915933:330100..330633Clytia hemisphaericaexon
TCONS_00067170-exon-scaffold_464-1575043694:330100..330633TCONS_00067170-exon-scaffold_464-1575043694:330100..330633Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067170-proteinTCONS_00067170-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_464supercontigscaffold_464:330100..330633 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.10645	0	0	0	0.116328	0	0.525558	0.275967	0	0.995364	0	0.290402	0.150792	0	0	0	0	0	0	0	0	0	0	0.234405	0.104601	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012934Znf_AD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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