TCONS_00067179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067179
Unique NameTCONS_00067179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067179 ID=TCONS_00067179|Name=TCONS_00067179|organism=Clytia hemisphaerica|type=transcript|length=825bp
GTCATTTCTCCAAACAAAACGcacaaaatttatcaatttgacTTACACGC
TTTTCAATCCTTtaataactttttcttttctttttttacagtcattgcat
caaaaattgaagtatatatatataatagaATGGAAGAGTGTCTATGGCAA
CCAATTGAGCAGTGTCTCTTTGCTGACCGCTTACACCATAATAgaaataa
taatgaaaatgtGGAAAGAACACCAACCATACATGACACTATACTTCAAG
AAATCCCTATCCTTATTCAAAGAGGTTTTGCAGAAAATATTATAACATTT
GTTTATGACatgaataaaaaatatgagaaatatcAGCCAATCTTGGAAGT
TTTGGCAACAATGGCACTCTATGGAAACGAAGATGTAACACGAAAGGTCT
TAGAAGCTTTACCAAAAATTTGTAATATCCCAACAAAGCTGATGTACTTT
TATGAATTGACTCGAAAATATGATCGTATAAAAAATGTTTGGGATGACCA
ACATAATGGATGGGTTCACAAATGCATTTTGGAATGGGCAGGACAGTTTG
ACAATGATGATATCATGACGCTCCTCTATTATTTTACAAAGTATAAAAAA
AGACATGGACACAGACTTTTGGATGTAAGCTATATTCTctaaatctttca
ttaacaaAGCCTTATCAAAGTCTTCCAAAATTCAACATATCAAAGGGACA
tgaaagtagtaaaatgtaaacatttcgCAAACAATGTTTCATTatagaga
acaattaaaatcatgtgtccaaaacaaacttgtaaaacgaTTGAAACAAT
CAGAATTACTTTGACAtagtgacat
Run BLAST on NCBI

transcript from alignment at scaffold_466:170032..170856+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067179 ID=TCONS_00067179|Name=TCONS_00067179|organism=Clytia hemisphaerica|type=transcript|length=825bp|location=Sequence derived from alignment at scaffold_466:170032..170856+ (Clytia hemisphaerica)
GTCATTTCTCCAAACAAAACGcacaaaatttatcaatttgacTTACACGC
TTTTCAATCCTTtaataactttttcttttctttttttacagtcattgcat
caaaaattgaagtatatatatataatagaATGGAAGAGTGTCTATGGCAA
CCAATTGAGCAGTGTCTCTTTGCTGACCGCTTACACCATAATAgaaataa
taatgaaaatgtGGAAAGAACACCAACCATACATGACACTATACTTCAAG
AAATCCCTATCCTTATTCAAAGAGGTTTTGCAGAAAATATTATAACATTT
GTTTATGACatgaataaaaaatatgagaaatatcAGCCAATCTTGGAAGT
TTTGGCAACAATGGCACTCTATGGAAACGAAGATGTAACACGAAAGGTCT
TAGAAGCTTTACCAAAAATTTGTAATATCCCAACAAAGCTGATGTACTTT
TATGAATTGACTCGAAAATATGATCGTATAAAAAATGTTTGGGATGACCA
ACATAATGGATGGGTTCACAAATGCATTTTGGAATGGGCAGGACAGTTTG
ACAATGATGATATCATGACGCTCCTCTATTATTTTACAAAGTATAAAAAA
AGACATGGACACAGACTTTTGGATGTAAGCTATATTCTctaaatctttca
ttaacaaAGCCTTATCAAAGTCTTCCAAAATTCAACATATCAAAGGGACA
tgaaagtagtaaaatgtaaacatttcgCAAACAATGTTTCATTatagaga
acaattaaaatcatgtgtccaaaacaaacttgtaaaacgaTTGAAACAAT
CAGAATTACTTTGACAtagtgacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041972XLOC_041972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067179-exon-scaffold_466-1491911889:170032..170856TCONS_00067179-exon-scaffold_466-1491911889:170032..170856Clytia hemisphaericaexon
TCONS_00067179-exon-scaffold_466-1510915933:170032..170856TCONS_00067179-exon-scaffold_466-1510915933:170032..170856Clytia hemisphaericaexon
TCONS_00067179-exon-scaffold_466-1575043694:170032..170856TCONS_00067179-exon-scaffold_466-1575043694:170032..170856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:170032..170856 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.11661	2.47739	1.26844	1.53458	3.73346	1.82446	2.95261	2.53633	1.527	1.34755	0.52581	1.13292	2.42277	3.34051	1.79003	1.56959	1.75976	1.0332	2.4213	3.06085	1.51252	1.36117	1.35471	1.81323	3.44998	2.97891	1.37809	0	1.19193	0.703017
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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