TCONS_00067182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067182
Unique NameTCONS_00067182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067182 ID=TCONS_00067182|Name=TCONS_00067182|organism=Clytia hemisphaerica|type=transcript|length=1987bp
AGATTCagtgaacaaaataaaagaaattaatgaaaatgaatATAAACACT
AAATGACTTTCCACAATGACATGGGCACATCATGGGACATTTCATCaaca
tatttattttgttgatccTTTTTATAGCGATGGTTCATTGCAAAGGTGAC
CAAGAAAACAGATATATTAACAAAGACATTTTGTCACCTTTTCTATTAAA
CAAAGTTGAGACAAGACGAAAGAACCGTTTAAGTCATCAACATTATGAAA
TTGTAAATACTGATACAAGAAAGAACTCATCACAACTGGTACAACGTTTT
ACAAAGAAATTAACAAATAATACAGTTTACGGTCACAGAATACTTATTTC
AAATGGGTACAAAGTGTTATCAGTTTTAGAACCTAAAGAAGATGGTGGTT
GCAGTAAACACCAAACTGCTACAGTCTATGAATCATCGAAACAAAGGGAA
TGCTTAGTTGCCATTAATGCTGGATTCTTCAATGAAGACACTGGACAATG
TTTTGGTAACATTATCAGTGATGGTGAACTAATCAATCAGTTTAGAGGAC
TCAAAAGCGTAAACTTCGGTATCCGTGACGATGGTAGTATAGTGACTGGG
TATTTGAAAGAAACAGATTTTAAGGAAATGAGGCATCCACTGTTACAACT
AGTTACAGGTGTGGGCTGGATTTTGAGAAGGGGAGAAAATTATTTATCCA
CTAGTAAACAACATGAACAATGTAATTTAGATAacttacaaaatttcttt
gaagtgaGAACAGCAAGGACCTTTTTAGGGCACGACTCAAAAGGCAATGT
ACATATTGTGCAGGTCGAAGGCAAAACTGGTTTGTATGGGATAAGTCTAT
ATGAGTCAGTGGAACTTCTGAAGTCATTTAATTTGGTGAATGTAATTAAT
TTGAATGGTGCTGGATCGTCTACACTGGTGATTAACGATACTGTTGTCAA
TTATCCTGGTAACACTTgTTACAACGATGAAGGCCGATCAAATCTATGCG
ATACGAAAGTCAGTACTATCCTCTGTGTACACAAACCAGATTCCTGTATC
CCTGGACAGTCTTGTTCAGGAAGAGGAACCTGTTTCAAAGGAAAGTGTAA
ATGTCACAATGACTGGTCTGGCAAAGATTGCGAATTCAATGgaaaaatgc
TGGAGAAGTGTTGTTGGCGTAATTATAACATAGTAATCTTCATGAGTGCG
TTGATAGGAGCCAGTGTGGTAATCAACGTTGTCTTATGTGATCTTTTCAT
GTTATACCGATTCCGTTCGAAGGATATGACACAACCGAGGAGAAGACCCA
AAGACAGATTGAGGACGTACTTGAAGGAAACTTCAATCATTTCTGATGAC
GAATCTACTGATATTTTAACTTCAGCTGAAAATTTACTGGCTACCACTTC
TTCTCTCTAGATTTTCTTCATTAAAACACTTCTTATTATACTGAGTCTaa
atggtgataaaagagatttaagtttaaaaaaagaaaacttcattCGGAAA
AGGGGCTCAAGAAGGTTTTACTGTGTTTTTCTCTATATTTTACCTAGGAA
AGTGTCTGATTTTCTCATTATCTAAAGATATTTGGTGTCAGGTGAAAGGA
CTCCTTTAATAATCAGGCTAAAGTCAATTCCTTTAGCCATTTTCTTCACT
TAATTTTGTCGTCTCTGTGATTGTATTCTGCTCTCTGTACTATTCAAATC
AGTGATGACTGACAATGTTAATTAAccagaaatttttaattttaacaaca
ctatagattttattttttaatttgaacaatttaaaaacaactaccttaag
ggaagaaatttttgcgagtagaaattttcgcggaatttagtCTCGCAAAT
GAGCcaggggggtcatgcagttactaTGTGAACACTATGACACTTAGTAC
GTTGTGGTTTaacaactaaaaaaaattaaaacagttACTCCAAAGTGGAG
TAAGTGCacattttttcccttttttgaaaaatttccc
Run BLAST on NCBI

transcript from alignment at scaffold_466:206914..211673+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067182 ID=TCONS_00067182|Name=TCONS_00067182|organism=Clytia hemisphaerica|type=transcript|length=4760bp|location=Sequence derived from alignment at scaffold_466:206914..211673+ (Clytia hemisphaerica)
AGATTCagtgaacaaaataaaagaaattaatgaaaatgaatATAAACACT
AAATGACTTTCCACAATGACATGGGCACATCATGGGACATTTCATCaaca
tatttattttgttgatccTTTTTATAGCGATGGTTCATTGCAAAGGTGAC
CAAGAAAACAGATATATTAACAAAGACATTTTGTCACCTTTTCTATTAAA
CAAAGTTGAGACAAGACGAAAGAACCGTTTAAGTCATCAACATTATGAAA
TTGTAAATACTGATACAAGAAAGAACTCATCACAACTGGTACAACGTTTT
ACAAAGAAATTAACAAATAATACAGTTTACGGTCACAGAATACTTATTTC
AAATGGGTACAAAGTGTTATCAGTTTTAGAACCTAAAGAAGATGGTGGTT
GCAGTAAACACCAAACTGCTACAGTCTATGAATCATCGAAACAAAGGGAA
TGCTTAGTTGCCATTAATGCTGGATTCTTCAATGAAGACACTGGACAATG
TTTTGGTAACATTATCAGTGATGGTGAACTAATCAATCAGTTTAGAGGAC
TCAAAAGCGTAAACTTCGGTATCCGTGACGATGGTAGTATAGTGACTGGG
TATTTGAAAGAAACAGATTTTAAGGAAATGAGGCATCCACTGTTACAACT
AGTTACAGGTGTGGGCTGGATTTTGAGAAGGGGAGAAAATTATTTATCCA
CTAGTAAACAACATGAACAATGTAATTTAGATAacttacaaaatttcttt
gaagtgaGAACAGCAAGGACCTTTTTAGGGCACGACTCAAAAGGCAATGT
ACATATTGTGCAGGTCGAAGGCAAAACTGGTTTGTATGGGTAAATATGAA
ttacttttttgaatttattactTGTTTCTAATATAAcatttattaaaaat
ttcacAAGTCTCTAATATACATCTTTGACAAGATAATGCTAAAATTCATA
ATTCATAAAATGTAATTTGAAAATGATCCTTTCTTTTTGATATAGCACAT
ATCTTTTTGAACTTTTATTTCGAATTCATATgttattactttattttttc
cagGATAAGTCTATATGAGTCAGTGGAACTTCTGAAGTCATTTAATTTGG
TGAATGTAATTAATTTGAATGGTGCTGGATCGTCTACACTGGTGATTAAC
GATACTGTTGTCAATTATCCTGGTAACACTTggtataaaaaaagttataa
agaaTCCTCACTCTAATTAAAAATTCGAATGAAGAATATCTGTCAAATAT
ATACTTTGCTATTTCAAGCAGTAATTGAACCAACTAAGGTTCGACAGagt
ataagaaaaacaaatggaTTTCGTTAATATCTTTATCTAACTTTCTATTT
TATTGTATGTAAAACTTCAATGAACTTGACCACTGTCCTGCACTATCAcg
cttcaatttttcaatatagTTACAACGATGAAGGCCGATCAAATCTATGC
GATACGAAAGTCAGTACTATCCTCTGTGTACACAAACCAGATTCCTGTAT
CCCTGGACAGTCTTGTTCAGGAAGAGGAACCTGTTTCAAAGGAAAGTGTA
AATGTCACAATGACTGGTCTGGCAAAGATTGCGAATTCAATGGTAGGTTG
GAAACTAACTGAGATTAcattcaaaaatgagttttacGACTTTTTGGGGT
GTCTCAGGACAATTTTAACCGTGTCTatttttgtagatttatatttttcg
aaaaattaaagtttttgatCATAAATATGATACCAAAGGACTACTTAAAA
GGTAGTCGATTCGGGCAGTatctaaattttaattttgtcaaatttatttt
caggaaaaatgcTGGAGAAGTGTTGTTGGTGAGTATTTAATTGTTCCGAA
AACTCTCAAAGCTAGAATAAGAATACGTTGCGCTAgtagtgaaaaaagtt
tgtttgtgTTGTCAAACTTTACTTACATTAGGCTACTCATTCTCTGCTCT
AATCTGCTCAACGATCATTTCAGCTCAAGAAAAAATTGTGAGAACTTAGT
ACGTGATATTATGGTGTAAAAGGCCAGATGGGAAATTAATTTATCCCATT
AGCTGGGGGAGGTTTTGTTTNAATACTGATACAAGAAAGAACTCATCACA
ACTGGTACAACGTTTTACAAAGAAATTAACAAATAATACAGTTTACGGTC
ACAGAATACTTATTTCAAATGGGTACAAAGTGTTATCAGTTTTAGAACCT
AAAGAAGATGGTGGTTGCAGTAAACACCAAACTGCTACAGTCTATGAATC
ATCGAAACAAAGGGAATGCTTAGTTGCCATTAATGCTGGATTCTTCAATG
AAGACACTGGACAATGTTTTGGTAACATTATCAGTGATGGTGAACTAATC
AATCAGTTTAGAGGACTCAAAAGCGTAAACTTCGGTATCCGTGACGATGG
TAGTATAGTGACTGGGTATTTGAAAGAAACAGATTTTAAGGAAATGAGGC
ATCCACTGTTACAACTAGTTACAGGTGTGGGCTGGATTTTGAGAAGGGGA
GAAAATTATTTATCCACTAGTAAACAACATGAACAATGTAATTTAGATAa
cttacaaaatttctttgaagtgaGAACAGCAAGGACCTTTTTAGGGCACG
ACTCAAAAGGCAATGTACATATTGTGCAGGTCGAAGGCAAAACTGGTTTG
TATGGGTAAATATGAAttacttttttgaatttattactTGTTTCTAATAT
AAcatttattaaaaatttcacAAGTCTCTAATATACATCTTTGACAAGAT
AATGCTAAAATTCATAATTCATAAAATGTAATTTGAAAATGATCCTTTCT
TTTTGATATAGCACATATCTTTTTGAACTTTTATTTCGAATTCATATgtt
attactttattttttccagGATAAGTCTATATGAGTCAGTGGAACTTCTG
AAGTCATTTAATTTGGTGAATGTAATTAATTTGAATGGTGCTGGATCGTC
TACACTGGTGATTAACGATACTGTTGTCAATTATCCTGGTAACACTTggt
ataaaaaaagttataaagaaTCCTCACTCTAATTAAAAATTCGAATGAAG
AATATCTGTCAAATATATACTTTCCTATTTCAAGCAGTAATTGAACCAAC
TAAGGTTCGACAGagtataagaaaaacaaatggaTTTCGTTAATATCTCT
ATCTAACTTTCTATTTTATTGTATGTAAAACTTCAATGAACTTGACCACT
GTCCTGCACTATCAcgcttcaatttttcaatatagTTACAACGATGAAGG
CCGATCAAATCTATGCGATACGAAAGTCAGTACTATCCTCTGTGTACACA
AACCAGATTCCTGTATCCCTGGACAGTCTTGTTCAGGAAGAGGAACCTGT
TTCAAAGGAAAGTGTAAATGTCACAATGACTGGTCTGGCAAAGATTGCGA
ATTCAATGGTAGGTTGGAAACTAACTGAGATTAcattcaaaaatgagttt
tacGACTTTTTGGGGTGTCTCAGTACAATTTTAACCGTGTCTatttttgt
agatttatatttttcgaaaaattaaagtttttgatCATAAATATGATACC
AAAGGACTACTTAAAAGGTAGTCGATTCGGGCAGTatctaaattttaatt
ttgtcaaatttattttcaggaaaaatgcTGGAGAAGTGTTGTTGGTGAGT
ATTTAATTGTTCCGAAAACTCTCAAAGCTAGAATAAGAATACGTTGCGCT
AgtagtgaaaaaagtttgtttgtgTTGTCAAACTTTACTTACATTAGGCT
ACTCATTCTCTGCTCTAATCTGCTCAACGATCATTTCAGCTCAAGAAAAA
ATTGTGAGAACTTAGTACGTGATATTATGGTGTAAAAGGCCAGATGGGAA
ATTAATTTATCCCATTAGCTGGGGGAGGTTTtgtttgaatattgaatatc
ctcattttgatgcttgaaaaATGTTCTCTTTCTTTTTAGGCGTAATTATA
ACATAGTAATCTTCATGAGTGCGTTGATAGGAGCCAGTGTGGTAATCAAC
GTTGTCTTATGTGATCTTTTCATGTTATACCGATTCCGTTCGAAGGATAT
GACACAACCGAGGAGAAGACCCAAAGACAGATTGAGGACGTACTTGAAGG
AAACTTCAATCATTTCTGATGACGAATCTACTGATATTTTAACTTCAGCT
GAAAATTTACTGGCTACCACTTCTTCTCTCTAGATTTTCTTCATTAAAAC
ACTTCTTATTATACTGAGTCTaaatggtgataaaagagatttaagtttaa
aaaaagaaaacttcattCGGAAAAGGGGCTCAAGAAGGTTTTACTGTGTT
TTTCTCTATATTTTACCTAGGAAAGTGTCTGATTTTCTCATTATCTAAAG
ATATTTGGTGTCAGGTGAAAGGACTCCTTTAATAATCAGGCTAAAGTCAA
TTCCTTTAGCCATTTTCTTCACTTAATTTTGTCGTCTCTGTGATTGTATT
CTGCTCTCTGTACTATTCAAATCAGTGATGACTGACAATGTTAATTAAcc
agaaatttttaattttaacaacactatagattttattttttaatttgaac
aatttaaaaacaactaccttaagggaagaaatttttgcgagtagaaattt
tcgcggaatttagtCTCGCAAATGAGCcaggggggtcatgcagttactaT
GTGAACACTATGACACTTAGTACGTTGTGGTTTaacaactaaaaaaaatt
aaaacagttACTCCAAAGTGGAGTAAGTGCacattttttcccttttttga
aaaatttccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041973XLOC_041973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067182-exon-scaffold_466-1491911889:206914..207752TCONS_00067182-exon-scaffold_466-1491911889:206914..207752Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1510915933:206914..207752TCONS_00067182-exon-scaffold_466-1510915933:206914..207752Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1575043694:206914..207752TCONS_00067182-exon-scaffold_466-1575043694:206914..207752Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1491911889:207967..208095TCONS_00067182-exon-scaffold_466-1491911889:207967..208095Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1510915933:207967..208095TCONS_00067182-exon-scaffold_466-1510915933:207967..208095Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1575043694:207967..208095TCONS_00067182-exon-scaffold_466-1575043694:207967..208095Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1491911889:210149..210321TCONS_00067182-exon-scaffold_466-1491911889:210149..210321Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1510915933:210149..210321TCONS_00067182-exon-scaffold_466-1510915933:210149..210321Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1575043694:210149..210321TCONS_00067182-exon-scaffold_466-1575043694:210149..210321Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1491911889:210533..210557TCONS_00067182-exon-scaffold_466-1491911889:210533..210557Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1510915933:210533..210557TCONS_00067182-exon-scaffold_466-1510915933:210533..210557Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1575043694:210533..210557TCONS_00067182-exon-scaffold_466-1575043694:210533..210557Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1491911889:210853..211673TCONS_00067182-exon-scaffold_466-1491911889:210853..211673Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1510915933:210853..211673TCONS_00067182-exon-scaffold_466-1510915933:210853..211673Clytia hemisphaericaexon
TCONS_00067182-exon-scaffold_466-1575043694:210853..211673TCONS_00067182-exon-scaffold_466-1575043694:210853..211673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:206914..211673 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.36389	3.86734	29.0099	34.5593	12.7707	10.1408	0.466277	2.27886	1.93929	8.25651	7.17122	1.83532	5.39894	0.950994	6.17815	5.64892	6.75075	1.57673	1.19365	5.81181	0.735806	1.50183	8.05725	7.71945	1.25594	11.7796	2.03002	4.95564	9.85305	2.5709
Blast
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BLAST of TCONS_00067182 vs. Swiss-Prot (Human)
Match: NAGPA (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGPA PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.303e-61
Identity = 111/287 (38.68%), Postives = 168/287 (58.54%), Query Frame = 1 
Query:  289 VQRFTKKLTNNTVYGHRILISNGYKVLSVLEPKEDGGCSKHQTATVYESSKQRECLVAINAGFFNEDTGQCFGNIISDGELINQFRGLKSVNFGIRDDGSIVTGYLKETDFKEMRHPLLQLVTGVGWILRRGENYLSTSKQHEQCN----LDNLQNFFEVRTARTFLGHDSKGNVHIVQVEGKTGLYGISLYESVELLKSFNLVNVINLNGAGSSTLVINDTVVNYPGNTCYNDEGRSNLCDTKVSTILCVHKPDSCIPGQSCSGRGTCFKGKCKCHND-WSGKDCE 1134
            V+ F     +  V GH        +  SVLEP   GGC+  + ATV E+++  +C VA N GFF  ++G+C GN++SD   ++   GL++  FGIR DG++VTGYL E +  +  +P +QL++GV W++R G  Y++ S Q  +C+      +   F  V +ART +GHD KG + +   +G+T   GI+L+E  E L   ++VN INL+G GS+T V+N T+ +YP + C ++  R   C  +VST++CVH+P  C P   C G GTC  G C+C    W G  C+
Sbjct:   78 VRTFVSHFRDRAVAGHLTRAVEPLRTFSVLEPGGPGGCAARRRATVEETARAADCRVAQNGGFFRMNSGECLGNVVSDERRVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDTENPFVQLLSGVVWLIRNGSIYINES-QATECDETQETGSFSKFVNVISARTAIGHDRKGQLVLFHADGQTEQRGINLWEMAEFLLKQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDNMWR---CPRQVSTVVCVHEP-RCQP-PDCHGHGTCVDGHCQCTGHFWRGPGCD 358
The following BLAST results are available for this feature:
BLAST of TCONS_00067182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAGPA5.303e-6138.68N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
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