TCONS_00067185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067185
Unique NameTCONS_00067185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2051

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067185 ID=TCONS_00067185|Name=TCONS_00067185|organism=Clytia hemisphaerica|type=transcript|length=2051bp
TCTTACCCTCGtgataattaaaaaaagattttctatttttctttcaggta
caacaactaaaaagaaaaataacttgaaaatgACTTGAGAAGTCTTGAGA
AATGAAAATGATGTAATAATCAAATGGAAACAACAAAACATCATGTATTT
TCATACCATCTTATTGGTGTTCTCTTTGATTCGCCCCAATACTGGTGAAC
AAGATATTTTGTACCCATATCCATCCGTTAGACATCATTTAGACCCTAGG
CGCTCACACCGTTACGTTCGTGACTGTCAACCTAAAGAACATGGAAACCT
TACACACGAAACTATTAAAACATTGAATTCGAGCAAAGAAATTCAAGTTA
ATTATTTCAGGAAAGATTTCACTGGCTTTGGTTTACAATTTGGACATCAT
TCTATTATTAAGGATCCAACATCTATGATCTCAATACACCAGCCTCTAGA
TGGTGGTTGTCAGAACCTTTCTACTAGTACGGTTAAGGATACTGCTATTC
AAAATGGCTGCTACATAGCTACAAATGCAGGCTTTTTTGTGCCGAGTGAC
CGCTCACCTTATGGTGCTTGCCTCGGAAACATTATTTCAGATTCAAAAAT
AGTACGAAAAACGGGTATACAAAATGCAAACTTTGGAATCCGTCGGGATG
GTTCAATAGTAATCGGGTATTTATCTGAAGATGAAGTAACCGAAACGAAA
AATCCGTTTATTCAATTAGTAACCGGTGTAGGATGGATTATTCGTAATGG
TAAAAGTTACGTGACCGAGAGTATAAAAGCTGAGTGCGAAGACACACAAA
CGACATCCAGTATGGCGCGATTCTTCTCAGTACAATCTGCACGGACATTG
CTTGGTGTGGATGGTAATGGATATGTGCATTTGGTTACTGTTGATGGTAA
AACTAATTCAAGAGGAATCAACCTACCAGCCGCAGTGAAGTATTTGATCG
AACAAGGTGTTCAGAATGCAATCAATTTGGATGGTGGAGGATCGGCAACT
TATGTCATCAACTCAACTGTGGTCAATTACCCTTCAGATACACACCATGA
TCAACCAGAGATTTTGGTTCCACGTAAAGTCAGTTCCATTATTTGTGTTA
AGAAAGAAATGAATGGTGATGTCACACCAGAACACATGGCATCACTTAGC
TACTGTTGCAACCGCAATTACTTCTTGATCATTGGGTTGACAGTGATTAT
TGGTTTTTCGTGTCTATTGCATGTTCATTTCTACACACTGTATCAACATT
ACCGAAACAAAGCCAAAGACCTGTTGAGTGGTCAACAGAAAAAAGAAGCG
TTGCAGAGTCTCTTGCAACAAGCTAATAATGAATTGTCGTCAGAGTTTGA
TAGtgattttgacgattttgagGATGATGACTTATAGTGTTGGTGCTGGT
TAGTTGTTGCCaatgtttttctgtttttgtatGGCTATTGGAATTATTTT
TGCGAATTTCATCTTTTAAGCGTAACTTATTACATTTGTTTAGATTATTT
TACATATGCGATGAAAATTCCATCTTCACCTTTTGCGAGTCTCGTTTAGG
ATTGCCAAACAAGGTTTTTAGGAACTTTTAGATGTATTTGATAAAGTTAT
TCTCGAGCATTTTATAATTcttgaatgaaaatatattttgtaaagtttct
gatttttaataatattttttagaaacatgaatttatttattttttcccac
cattttttctaaagattcaTTTATAGGTTAACATTCAAATCGAGTTTAAT
AACGATAGtaaattttaatgataatttaaATTATGTGGTAGTTAGTAGTT
CATATTATTGATTTCTTCTCtgatattatattattttctaATCCCTgaca
ttcaaatatttttcaatgttctagctattttcaatttttgatctTATTTG
ATTTATCTTTTAATTAGattgataatttgatttttttactgaaaattcCA
AGATAATCGAGGGGTCACATTTCCTAACTTTATATTTTTGCAGATAAGTT
TTGTACGTCCAATTACgttaattaaataaaaatcgatttggAATGGAAAT
G
Run BLAST on NCBI

protein sequence of TCONS_00067185-protein

>TCONS_00067185-protein ID=TCONS_00067185-protein|Name=TCONS_00067185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MYFHTILLVFSLIRPNTGEQDILYPYPSVRHHLDPRRSHRYVRDCQPKEH
GNLTHETIKTLNSSKEIQVNYFRKDFTGFGLQFGHHSIIKDPTSMISIHQ
PLDGGCQNLSTSTVKDTAIQNGCYIATNAGFFVPSDRSPYGACLGNIISD
SKIVRKTGIQNANFGIRRDGSIVIGYLSEDEVTETKNPFIQLVTGVGWII
RNGKSYVTESIKAECEDTQTTSSMARFFSVQSARTLLGVDGNGYVHLVTV
DGKTNSRGINLPAAVKYLIEQGVQNAINLDGGGSATYVINSTVVNYPSDT
HHDQPEILVPRKVSSIICVKKEMNGDVTPEHMASLSYCCNRNYFLIIGLT
VIIGFSCLLHVHFYTLYQHYRNKAKDLLSGQQKKEALQSLLQQANNELSS
EFDSDFDDFEDDDL
Run BLAST on NCBI

transcript from alignment at scaffold_466:212653..217679+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067185 ID=TCONS_00067185|Name=TCONS_00067185|organism=Clytia hemisphaerica|type=transcript|length=5027bp|location=Sequence derived from alignment at scaffold_466:212653..217679+ (Clytia hemisphaerica)
TCTTACCCTCGtgataattaaaaaaagattttctatttttctttcaggta
caacaactaaaaagaaaaataacttgaaaatgACTTGAGAAGTCTTGAGA
AATGAAAATGATGTAATAATCAAATGGAAACAACAAAACATCATGTATTT
TCATACCATCTTATTGGTGTTCTCTTTGATTCGCCCCAATACTGGTGAAC
AAGATATTTTGTACCCATATCCATCCGTTAGACATCATTTAGACCCTAGG
CGCTCACACCGTTACGTTCGTGACTGTCAACCTAAAGAACATGGAAACCT
TACACACGAAACTATTAAAACATTGAATTCGAGCAAAGAAATTCAAGTTA
ATTATTTCAGGAAAGATTTCACTGGCTTTGGTTTACAATTTGGACATCAT
TCTATTATTAAGGATCCAACATCTATGATCTCAATACACCAGCCTCTAGA
TGGTGGTTGTCAGAACCTTTCTACTAGTACGGTTAAGGATACTGCTATTC
AAAATGGCTGCTACATAGCTACAAATGCAGGCTTTTTTGTGCCGAGTGAC
CGCTCACCTTATGGTGCTTGCCTCGGAAACATTATTTCAGATTCAAAAAT
AGTACGAAAAACGGGTATACAAAATGCAAACTTTGGAATCCGTCGGGATG
GTTCAATAGTAATCGGGTATTTATCTGAAGATGAAGTAACCGAAACGAAA
AATCCGTTTATTCAATTAGTAACCGGTGTAGGATGGATTATTCGTAATGG
TAAAAGTTACGTGACCGAGAGTATAAAAGCTGAGTGCGAAGACACACAAA
CGACATCCAGTATGGCGCGATTCTTCTCAGTACAATCTGCACGGACATTG
CTTGGTGTGGATGGTAATGGATATGTGCATTTGGTTACTGTTGATGGTAA
AACTAATTCAAGAGGGTATAACACACTGCAGTATTTTTTAAGCTATACAT
atctcttttaaaaaatttctaaaattcagTTTTCGTAAATGAAAAATTGT
ATGGGGTTTTGAGGATATTAGATGTGGTGCATACATATGAAAAGGACTGG
ATATCCAGGAGGTTAGCTTAAAAAGGCTTTTTTGTAGGTCATTTTTTAGG
ATATCCTGGGGGtcatccgaaaaaaaaattagaaaatcggAGATATCCAA
GggccaaatattttgaaataggAAAAAAACGACACAACAAAATTCTATGC
CAAACCTACATAGTTCGGACCCCCCACCCCATTTTCTTAAGGGGGaatga
caccttccaaaaaagctaagaagggggatcagaaatttccattaaaaagg
gggggatagcaaggaggggGGATCGTCTAAGAagggggggcttacatata
tcgtagattattttccagcactgctatttggtctgcatgaaaggaaggtc
tttattttcataaaaagtggtattatatttgccagatataatttttcttt
actgtttcccttccctttttaccatacAAAATTTAAcccaaaacccttgg
gggataggcatttttaaaggttgggggatgccaagaagggggggatcatt
taagaaggggggatcagacccctttccgcactatgaccTATCAAATTGCA
CAAATCTCAAAACTGTCCATGAAATAATATGCTTAAAACCCCACACAATT
TATTTCTGAAATCGTCCATTCATTTCATGGTAGTTATTTTCATTGACTGA
CTCTTGATTTGcttgattaaaaaagaaattcgaaACAAGCAGCTTGAATA
ACATTACAACGGNCTGACTCTTGATTTGcttgattaaaaaagaaattcga
aACAAGCAGCTTGAATACAACGTATTACAACGTATGAAAGTATTGCCCTG
TTTTAATGAGATTGAATTTTCGTTTCGTTTTCATTCTCTAGAATCAACCT
ACCAGCCGCAGTGAAGTATTTGATCGAACAAGGTGTTCAGAATGCAATCA
ATTTGGATGGTGGAGGATCGGCAACTTATGTCATCAACTCAACTGTGGTC
AATTACCCTTCAGATACACACCATGATCAACCAGAGTATAGATTGTTGTA
tctatgatatgcaccattgcaatgtcttctgacatcaCATCACGGCTgtt
tggttgtaagtgacgtaaaatcaatcagtacgtcacttgcaaccaatcag
ctgctgggtccgtggaagacattgcaatggtgcatatcatgaattaataT
TAGTCAACTTTTCTAAAACATACCTTGATGATAACGATAAAAACCagttt
gattttataaatgaatcGTTCAcagtgaaaagctgcaattttGAGGAAAT
ATCTCGTATTTTCACCGTTCATTAATGATAGATTATAGCTTTTCAGTGTA
AATTTATCcaaatatcaatttttgagTATAGTTGGGTCGATTTGATCAGT
TCCCGTTTTTACTCAAAGCTTGATCATTGAGATCGATTTTATTGAGCAAT
ACGAACCTGATTCTAAATTTGTATTTGCTTTGACTGTCCCTTTCCATTAC
TTATCATTTCATCCTTCTTGTTTTAGGATTTTGGTTCCACGTAAAGTCAG
TTCCATTATTTGTGTTAAGAAAGAAATGAATGGTGATGTCACACCAGGTA
TTCTTTCTCTCACTTGGCAGTTGTTTCAATCTAGATATTCCCTTACTTGT
GCCTCACGAGGTAAAAATAGGAACATTCTCTTAAAGGGACatataaaagt
agtaaaatgtaaacattgcgcgaaccacaaTTAAAAgtacgtgtccaaaa
caaacttgtaaaacaattgaaacaatcaaaatcagccatatttgttttta
ttttttatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCCCCCCCCTGAAGGTTCAGCCCCCCCCTGAGATTTAGCccccac
caaaattcgaaatagacAGCCCCCCctaccaaaatacaaaaaaaaaattt
aatttaagcTTAACAATCTGAACTCTTCAGAATTTAAAAACTAGAACTAT
CAAAAAGCTTATGTATAATgtcttcttttgaaattctaatCAACAAACGT
CAATAGTATTATTACAcaaacaaaataccaaaatgtacaaagaaaaattt
cttagttCTTGGAAAAAGTTGTTAGGTTAGCCCCCAGTCAACAGACCTAA
ACAAATAGACCCCCCCTGAGtaagtagcccccccccctgatgTTAGGGAA
AAAGAGCCCCCAGCCAGAACTTTAGGTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCTAAAcaaataccccccccccctgagtaagtagccccccccctgat
cttagggaaaaagagcccCCAGCTAGAACTTTAGGTTCTAGCCCCCCCCC
TAAGAGCCAGGGGGGTTGGATTCTATGCAATAACATGTTAAAATCTCTTG
GCCTTTTTTTTAGAACACATGGCATCACTTAGCTACTGTTGCAAGTAAGT
CTAATGTTATATAATAACAGTTGATAGCAATCTATCGACGCCATTTGTTA
CTTCTTTCAAAGTGACACCTCAGAATAcattctaaaatcaaaaattgtag
AATTTAACGTTGTCATTCGACCATTTTGACACTGCTATCTTTGAGTGAGA
TGATAAATAGATATTGaattcccaagatgattgaaaAGGTTGTGGATATT
TTTTTTggctagaatttttttttgcagtatACTGAATATAATTAGTTATG
AACAAAATACATAAATTAccccaaaaatgagaaaatagcaAGACCAAGAC
ctgtgaaagaaaacaaaacaaaaggttttgaatattgaaatattaagtAT
TCAAGTCATTAAATTTCGTATAAATCATGAGGATTTCCCTATTTTCGTTT
CTACAGCCGCAATTACTTCTTGATCATTGGGTTGACAGTGATTATTGGTT
TTTCGTGTCTATTGCATGTTCATTTCTACACACTGTATCAACATTACCGA
AACAAAGCCAAAGACCTGTTGAGTGGTCAACAGAAAAAAGAAGCGTTGCA
GAGTCTCTTGCAACAAGCTAATAATGAATTGTCGTCAGAGTTTGATAGtg
attttgacgattttgagGATGATGACTTATAGTGTTGGTGCTGGTTAGTT
GTTGCCaatgtttttctgtttttgtatGGCTATTGGAATTATTTTTGCGA
ATTTCATCTTTTAAGCGTAACTTATTACATTTGTTTAGATTATTTTACAT
ATGCGATGAAAATTCCATATTCACTTTGATAATGACAGGAACCTGTTACC
TTCACCTTTTGCGAGTCTCGTTTAGGATTGCCAAACAAGGTTTTTAGGAA
CTTTTAGATGTATTTGATAAAGTTATTCTCGAGCATTTTATAATTcttga
atgaaaatatattttgtaaagtttctgatttttaataatattttttagaa
acatgaatttatttattttttcccaccattttttctaaagattcaTTTAT
AGGTTAACATTCAAATCGAGTTTAATAACGATAGtaaattttaatgataa
tttaaATTATGTGGTAGTTAGTAGTTCATATTATTGATTTCTTCTCtgat
attatattattttctaATCCCTgacattcaaatatttttcaatgttctag
ctattttcaatttttgatctTATTTGATTTATCTTTTAATTAGattgata
atttgatttttttactgaaaattcCAAGATAATCGAGGGGTCACATTTCC
TAACTTTATATTTTTGCAGATAAGTTTTGTACGTCCAATTACgttaatta
aataaaaatcgatttggAATGGAAATG

Coding sequence (CDS) from alignment at scaffold_466:212653..217679+

>TCONS_00067185 ID=TCONS_00067185|Name=TCONS_00067185|organism=Clytia hemisphaerica|type=CDS|length=6225bp|location=Sequence derived from alignment at scaffold_466:212653..217679+ (Clytia hemisphaerica)
ATGTATTTTCATACCATCTTATTGGTGTTCTCTTTGATTCGCCCCAATAC
TGGTGAACAAGATATTTTGTACCCATATCCATCCGTTAGACATCATTTAG
ACCCTAGGCGCTCACACCGTTACGTTCGTGACTGTCAACCTAAAGAACAT
GGAAACCTTACACACGAAACTATTAAAACATTGAATTCGAGCAAAGAAAT
TCAAGTTAATTATTTCAGGAAAGATTTCACTGGCTTTGGTTTACAATTTG
GACATCATTCTATTATTAAGGATCCAACATCTATGATCTCAATACACCAG
CCTCTAGATGGTGGTTGTCAGAACCTTTCTACTAGTACGGTTAAGGATAC
TGCTATTCAAAATGGCTGCTACATAGCTACAAATGCAGGCTTTTTTGTGC
CGAGTGACCGCTCACCTTATGGTGCTTGCCTCGGAAACATTATTTCAGAT
TCAAAAATAGTACGAAAAACGGGTATACAAAATGCAAACTTTGGAATCCG
TCGGGATGGTTCAATAGTAATCGGGTATTTATCTGAAGATGAAGTAACCG
AAACGAAAAATCCGTTTATTCAATTAGTAACCGGTGTAGGATGGATTATT
CGTAATGGTAAAAGTTACGTGACCGAGAGTATAAAAGCTGAGTGCGAAGA
CACACAAACGACATCCAGTATGGCGCGATTCTTCTCAGTACAATCTGCAC
GGACATTGCTTGGTGTGGATGGTAATGGATATGTGCATTTGGTTACTGTT
GATGGTAAAACTAATTCAAGAGGAATCAACCTACCAGCCGCAGTGAAGTA
TTTGATCGAACAAGGTGTTCAGAATGCAATCAATTTGGATGGTGGAGGAT
CGGCAACTTATGTCATCAACTCAACTGTGGTCAATTACCCTTCAGATACA
CACCATGATCAACCAGAGATTTTGGTTCCACGTAAAGTCAGTTCCATTAT
TTGTGTTAAGAAAGAAATGAATGGTGATGTCACACCAGAACACATGGCAT
CACTTAGCTACTGTTGCAACCGCAATTACTTCTTGATCATTGGGTTGACA
GTGATTATTGGTTTTTCGTGTCTATTGCATGTTCATTTCTACACACTGTA
TCAACATTACCGAAACAAAGCCAAAGACCTGTTGAGTGGTCAACAGAAAA
AAGAAGCGTTGCAGAGTCTCTTGCAACAAGCTAATAATGAATTGTCGTCA
GAGTTTGATAGtgattttgacgattttgagGATGATGACTTATAGATGTA
TTTTCATACCATCTTATTGGTGTTCTCTTTGATTCGCCCCAATACTGGTG
AACAAGATATTTTGTACCCATATCCATCCGTTAGACATCATTTAGACCCT
AGGCGCTCACACCGTTACGTTCGTGACTGTCAACCTAAAGAACATGGAAA
CCTTACACACGAAACTATTAAAACATTGAATTCGAGCAAAGAAATTCAAG
TTAATTATTTCAGGAAAGATTTCACTGGCTTTGGTTTACAATTTGGACAT
CATTCTATTATTAAGGATCCAACATCTATGATCTCAATACACCAGCCTCT
AGATGGTGGTTGTCAGAACCTTTCTACTAGTACGGTTAAGGATACTGCTA
TTCAAAATGGCTGCTACATAGCTACAAATGCAGGCTTTTTTGTGCCGAGT
GACCGCTCACCTTATGGTGCTTGCCTCGGAAACATTATTTCAGATTCAAA
AATAGTACGAAAAACGGGTATACAAAATGCAAACTTTGGAATCCGTCGGG
ATGGTTCAATAGTAATCGGGTATTTATCTGAAGATGAAGTAACCGAAACG
AAAAATCCGTTTATTCAATTAGTAACCGGTGTAGGATGGATTATTCGTAA
TGGTAAAAGTTACGTGACCGAGAGTATAAAAGCTGAGTGCGAAGACACAC
AAACGACATCCAGTATGGCGCGATTCTTCTCAGTACAATCTGCACGGACA
TTGCTTGGTGTGGATGGTAATGGATATGTGCATTTGGTTACTGTTGATGG
TAAAACTAATTCAAGAGGAATCAACCTACCAGCCGCAGTGAAGTATTTGA
TCGAACAAGGTGTTCAGAATGCAATCAATTTGGATGGTGGAGGATCGGCA
ACTTATGTCATCAACTCAACTGTGGTCAATTACCCTTCAGATACACACCA
TGATCAACCAGAGATTTTGGTTCCACGTAAAGTCAGTTCCATTATTTGTG
TTAAGAAAGAAATGAATGGTGATGTCACACCAGAACACATGGCATCACTT
AGCTACTGTTGCAACCGCAATTACTTCTTGATCATTGGGTTGACAGTGAT
TATTGGTTTTTCGTGTCTATTGCATGTTCATTTCTACACACTGTATCAAC
ATTACCGAAACAAAGCCAAAGACCTGTTGAGTGGTCAACAGAAAAAAGAA
GCGTTGCAGAGTCTCTTGCAACAAGCTAATAATGAATTGTCGTCAGAGTT
TGATAGtgattttgacgattttgagGATGATGACTTATAGATGTATTTTC
ATACCATCTTATTGGTGTTCTCTTTGATTCGCCCCAATACTGGTGAACAA
GATATTTTGTACCCATATCCATCCGTTAGACATCATTTAGACCCTAGGCG
CTCACACCGTTACGTTCGTGACTGTCAACCTAAAGAACATGGAAACCTTA
CACACGAAACTATTAAAACATTGAATTCGAGCAAAGAAATTCAAGTTAAT
TATTTCAGGAAAGATTTCACTGGCTTTGGTTTACAATTTGGACATCATTC
TATTATTAAGGATCCAACATCTATGATCTCAATACACCAGCCTCTAGATG
GTGGTTGTCAGAACCTTTCTACTAGTACGGTTAAGGATACTGCTATTCAA
AATGGCTGCTACATAGCTACAAATGCAGGCTTTTTTGTGCCGAGTGACCG
CTCACCTTATGGTGCTTGCCTCGGAAACATTATTTCAGATTCAAAAATAG
TACGAAAAACGGGTATACAAAATGCAAACTTTGGAATCCGTCGGGATGGT
TCAATAGTAATCGGGTATTTATCTGAAGATGAAGTAACCGAAACGAAAAA
TCCGTTTATTCAATTAGTAACCGGTGTAGGATGGATTATTCGTAATGGTA
AAAGTTACGTGACCGAGAGTATAAAAGCTGAGTGCGAAGACACACAAACG
ACATCCAGTATGGCGCGATTCTTCTCAGTACAATCTGCACGGACATTGCT
TGGTGTGGATGGTAATGGATATGTGCATTTGGTTACTGTTGATGGTAAAA
CTAATTCAAGAGGAATCAACCTACCAGCCGCAGTGAAGTATTTGATCGAA
CAAGGTGTTCAGAATGCAATCAATTTGGATGGTGGAGGATCGGCAACTTA
TGTCATCAACTCAACTGTGGTCAATTACCCTTCAGATACACACCATGATC
AACCAGAGATTTTGGTTCCACGTAAAGTCAGTTCCATTATTTGTGTTAAG
AAAGAAATGAATGGTGATGTCACACCAGAACACATGGCATCACTTAGCTA
CTGTTGCAACCGCAATTACTTCTTGATCATTGGGTTGACAGTGATTATTG
GTTTTTCGTGTCTATTGCATGTTCATTTCTACACACTGTATCAACATTAC
CGAAACAAAGCCAAAGACCTGTTGAGTGGTCAACAGAAAAAAGAAGCGTT
GCAGAGTCTCTTGCAACAAGCTAATAATGAATTGTCGTCAGAGTTTGATA
GtgattttgacgattttgagGATGATGACTTATAGATGTATTTTCATACC
ATCTTATTGGTGTTCTCTTTGATTCGCCCCAATACTGGTGAACAAGATAT
TTTGTACCCATATCCATCCGTTAGACATCATTTAGACCCTAGGCGCTCAC
ACCGTTACGTTCGTGACTGTCAACCTAAAGAACATGGAAACCTTACACAC
GAAACTATTAAAACATTGAATTCGAGCAAAGAAATTCAAGTTAATTATTT
CAGGAAAGATTTCACTGGCTTTGGTTTACAATTTGGACATCATTCTATTA
TTAAGGATCCAACATCTATGATCTCAATACACCAGCCTCTAGATGGTGGT
TGTCAGAACCTTTCTACTAGTACGGTTAAGGATACTGCTATTCAAAATGG
CTGCTACATAGCTACAAATGCAGGCTTTTTTGTGCCGAGTGACCGCTCAC
CTTATGGTGCTTGCCTCGGAAACATTATTTCAGATTCAAAAATAGTACGA
AAAACGGGTATACAAAATGCAAACTTTGGAATCCGTCGGGATGGTTCAAT
AGTAATCGGGTATTTATCTGAAGATGAAGTAACCGAAACGAAAAATCCGT
TTATTCAATTAGTAACCGGTGTAGGATGGATTATTCGTAATGGTAAAAGT
TACGTGACCGAGAGTATAAAAGCTGAGTGCGAAGACACACAAACGACATC
CAGTATGGCGCGATTCTTCTCAGTACAATCTGCACGGACATTGCTTGGTG
TGGATGGTAATGGATATGTGCATTTGGTTACTGTTGATGGTAAAACTAAT
TCAAGAGGAATCAACCTACCAGCCGCAGTGAAGTATTTGATCGAACAAGG
TGTTCAGAATGCAATCAATTTGGATGGTGGAGGATCGGCAACTTATGTCA
TCAACTCAACTGTGGTCAATTACCCTTCAGATACACACCATGATCAACCA
GAGATTTTGGTTCCACGTAAAGTCAGTTCCATTATTTGTGTTAAGAAAGA
AATGAATGGTGATGTCACACCAGAACACATGGCATCACTTAGCTACTGTT
GCAACCGCAATTACTTCTTGATCATTGGGTTGACAGTGATTATTGGTTTT
TCGTGTCTATTGCATGTTCATTTCTACACACTGTATCAACATTACCGAAA
CAAAGCCAAAGACCTGTTGAGTGGTCAACAGAAAAAAGAAGCGTTGCAGA
GTCTCTTGCAACAAGCTAATAATGAATTGTCGTCAGAGTTTGATAGtgat
tttgacgattttgagGATGATGACTTATAGATGTATTTTCATACCATCTT
ATTGGTGTTCTCTTTGATTCGCCCCAATACTGGTGAACAAGATATTTTGT
ACCCATATCCATCCGTTAGACATCATTTAGACCCTAGGCGCTCACACCGT
TACGTTCGTGACTGTCAACCTAAAGAACATGGAAACCTTACACACGAAAC
TATTAAAACATTGAATTCGAGCAAAGAAATTCAAGTTAATTATTTCAGGA
AAGATTTCACTGGCTTTGGTTTACAATTTGGACATCATTCTATTATTAAG
GATCCAACATCTATGATCTCAATACACCAGCCTCTAGATGGTGGTTGTCA
GAACCTTTCTACTAGTACGGTTAAGGATACTGCTATTCAAAATGGCTGCT
ACATAGCTACAAATGCAGGCTTTTTTGTGCCGAGTGACCGCTCACCTTAT
GGTGCTTGCCTCGGAAACATTATTTCAGATTCAAAAATAGTACGAAAAAC
GGGTATACAAAATGCAAACTTTGGAATCCGTCGGGATGGTTCAATAGTAA
TCGGGTATTTATCTGAAGATGAAGTAACCGAAACGAAAAATCCGTTTATT
CAATTAGTAACCGGTGTAGGATGGATTATTCGTAATGGTAAAAGTTACGT
GACCGAGAGTATAAAAGCTGAGTGCGAAGACACACAAACGACATCCAGTA
TGGCGCGATTCTTCTCAGTACAATCTGCACGGACATTGCTTGGTGTGGAT
GGTAATGGATATGTGCATTTGGTTACTGTTGATGGTAAAACTAATTCAAG
AGGAATCAACCTACCAGCCGCAGTGAAGTATTTGATCGAACAAGGTGTTC
AGAATGCAATCAATTTGGATGGTGGAGGATCGGCAACTTATGTCATCAAC
TCAACTGTGGTCAATTACCCTTCAGATACACACCATGATCAACCAGAGAT
TTTGGTTCCACGTAAAGTCAGTTCCATTATTTGTGTTAAGAAAGAAATGA
ATGGTGATGTCACACCAGAACACATGGCATCACTTAGCTACTGTTGCAAC
CGCAATTACTTCTTGATCATTGGGTTGACAGTGATTATTGGTTTTTCGTG
TCTATTGCATGTTCATTTCTACACACTGTATCAACATTACCGAAACAAAG
CCAAAGACCTGTTGAGTGGTCAACAGAAAAAAGAAGCGTTGCAGAGTCTC
TTGCAACAAGCTAATAATGAATTGTCGTCAGAGTTTGATAGtgattttga
cgattttgagGATGATGACTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041974XLOC_041974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067185-exon-scaffold_466-1491911889:212653..213567TCONS_00067185-exon-scaffold_466-1491911889:212653..213567Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1510915933:212653..213567TCONS_00067185-exon-scaffold_466-1510915933:212653..213567Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1575043694:212653..213567TCONS_00067185-exon-scaffold_466-1575043694:212653..213567Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1491911889:214544..214687TCONS_00067185-exon-scaffold_466-1491911889:214544..214687Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1510915933:214544..214687TCONS_00067185-exon-scaffold_466-1510915933:214544..214687Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1575043694:214544..214687TCONS_00067185-exon-scaffold_466-1575043694:214544..214687Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1491911889:215179..215249TCONS_00067185-exon-scaffold_466-1491911889:215179..215249Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1510915933:215179..215249TCONS_00067185-exon-scaffold_466-1510915933:215179..215249Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1575043694:215179..215249TCONS_00067185-exon-scaffold_466-1575043694:215179..215249Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1491911889:216316..216346TCONS_00067185-exon-scaffold_466-1491911889:216316..216346Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1510915933:216316..216346TCONS_00067185-exon-scaffold_466-1510915933:216316..216346Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1575043694:216316..216346TCONS_00067185-exon-scaffold_466-1575043694:216316..216346Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1491911889:216759..217120TCONS_00067185-exon-scaffold_466-1491911889:216759..217120Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1510915933:216759..217120TCONS_00067185-exon-scaffold_466-1510915933:216759..217120Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1575043694:216759..217120TCONS_00067185-exon-scaffold_466-1575043694:216759..217120Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1491911889:217152..217679TCONS_00067185-exon-scaffold_466-1491911889:217152..217679Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1510915933:217152..217679TCONS_00067185-exon-scaffold_466-1510915933:217152..217679Clytia hemisphaericaexon
TCONS_00067185-exon-scaffold_466-1575043694:217152..217679TCONS_00067185-exon-scaffold_466-1575043694:217152..217679Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067185-proteinTCONS_00067185-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:212653..217679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.4808	11.9641	6.2588	7.14736	28.4673	22.721	27.4119	26.7754	22.1545	27.6832	20.2939	17.1117	12.8608	11.0945	17.2363	18.0394	21.4279	16.0942	9.3977	10.9695	10.3166	11.3631	23.8503	22.2054	14.5374	18.1234	19.0679	13.5008	31.3182	27.8571
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018711NAGPA
Blast
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BLAST of TCONS_00067185 vs. Swiss-Prot (Human)
Match: NAGPA (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGPA PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 5.128e-68
Identity = 132/308 (42.86%), Postives = 182/308 (59.09%), Query Frame = 2 
Query:  197 EQDILYPYPSVRHHLDPRRSHRYVRDCQPKEHGNLTHET---IKTLNSSKEIQVNYFRKDFTGFGLQFGHHSIIKDPTSMISIHQPLD-GGCQNLSTSTVKDTAIQNGCYIATNAGFFVPSDRSPYGACLGNIISDSKIVRKTG-IQNANFGIRRDGSIVIGYLSEDEVTETKNPFIQLVTGVGWIIRNGKSYVTESIKAECEDTQTTSSMARFFSVQSARTLLGVDGNGYVHLVTVDGKTNSRGINLPAAVKYLIEQGVQNAINLDGGGSATYVINSTVVNYPSDTHHDQPEILVPRKVSSIICVKK 1105
            + D+L PYP  R         R  RDC     GN  HE+         +  + V  F   F    +  GH +   +P    S+ +P   GGC     +TV++TA    C +A N GFF    R   G CLGN++SD + V  +G +QNA FGIRRDG++V GYLSE+EV +T+NPF+QL++GV W+IRNG  Y+ ES   EC++TQ T S ++F +V SART +G D  G + L   DG+T  RGINL    ++L++Q V NAINLDGGGSAT+V+N T+ +YPSD   D      PR+VS+++CV +
Sbjct:   33 DDDLLLPYPRARA--------RLPRDCTRVRAGNREHESWPPPPATPGAGGLAVRTFVSHFRDRAVA-GHLTRAVEPLRTFSVLEPGGPGGCAARRRATVEETARAADCRVAQNGGFF----RMNSGECLGNVVSDERRVSSSGGLQNAQFGIRRDGTLVTGYLSEEEVLDTENPFVQLLSGVVWLIRNGSIYINESQATECDETQETGSFSKFVNVISARTAIGHDRKGQLVLFHADGQTEQRGINLWEMAEFLLKQDVVNAINLDGGGSATFVLNGTLASYPSDHCQDN-MWRCPRQVSTVVCVHE 326
The following BLAST results are available for this feature:
BLAST of TCONS_00067185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAGPA5.128e-6842.86N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
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