|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067189 ID=TCONS_00067189|Name=TCONS_00067189|organism=Clytia hemisphaerica|type=transcript|length=3236bp
tctcagcctgagcagttccttaacaattccttattttttgaaccattttc
agcctcgagttccttataaacgtgttccttataaaaaaaaaaacgtgtaa
tctttATTAGCTCTTGATTGTGGATCACGAATTTTAGACTCCCAGATTAG
TTTAACTGAAATCAGTGTAGATCAGATTCCTTGCTGACAAgcaacacttt
ttttataagaacatccaaagattttgaagccttcggacgttcttaacttt
tttggttttaagcctaaaaaagttcttaacatttcttatttttaccattt
ttgagtatttttgtgtaatttcctGAGAATGATGTATTAGATTccgcaaa
accttaaaatgtttttaaattgttcttaatattttagcatcgaagcctta
tgtccTCATCTAGTCTgctctcataaaaaaatatgtattaaTAATTAATT
CTAGGCATCATTACATGGAATTACTGTGTTCTTTGACACTGTTTGTAGAC
TTTACCTGCACATGAAAATCTCGGTTTACTATTTTCGAATAGAACAAAAG
CAGTGCAGTCACTTTGATCCTTGTCAAATCTCAGTCGCTCAGCGTAAAAA
GCCTCTACTCAAAAGAAAGACATTTTTGTCCCTGTCACTTCTGGCTCTTG
AGAGATATTTTGGTCTCATATTAATTTCCAAGCACACAGTAAGAAATTTA
ATCTTTTAAGCTAATAGAAAAGGTTTTTAATATTGCCTTTCAGAGTAATT
TGAAATTGTTCTAGattaataaaaaagaagaaatacacAAAAGATGTTTC
AGATTTAGACCCTAAACTTTTAGGACCTTTTTACAGTCTCATAGAACTTC
TTACATAAAATAATATGCTAATAATATAATGAGAACCACTCTCTATTGTG
ATTTTGAACTGACAAAACATAACTGAGATGTCGTGCAGCTATTAGGTGTG
CTAAATATAAAAGAGTTTCAATGCCATTTTTTTATTGTCTTAATCCATTA
GCGATTACTTGTCATCATTATTGACAATTATAAGTCAATTACAATAGTTT
AAAGATAATTACTGTTGTTGATGAGAATATTGTATTTTGAAGGAACTGTT
TTGCTCATTTACTCAATGAATAACTCCTTTTTTTTGTCAATCTGCTTATT
TTTCACATGGTTGATGCATCGTCGAAATGGGCGTTGTTTGTATTTTTTGG
GAACTTTCTTTCTTTACAGAATTCGTATGCCATTCCAAAGCTGTTTGACT
TACTAAAGCCAGTGAAACACAAATATATACGTCATAATAAATACGACACC
CAAATTACAATAACACTAAATGGTGGGTCAAGCATTTACCGATGATGTCA
TCAATCCTGGCCGCTCGTGTCCGGATTTGACCACAACCGTGGAAATGTCC
GAGGTTAGTGACGTCATCCAAACACTAACGGATTCAGATAAAATTGTCAC
TTCTGGCTCTATAACGCCGCACTCAAATGGGACAGTGGCAAAAAAGAGGC
CGGACTTGGCGTTAGATTTGAGTGATATTAGTTTTACGGAACCAACTCCC
GGGCAGAAATGTTTCGGTGAAAAATCAGATGTGGAACGAGTGTTAGACAG
TCGTTGTCCTTGTTTACAATCGAAATGTCTTCATTTATCTGGAACTTTCT
TATTAATAGCAATTGTTGGTATTGttgttatatttttctttcgacGCTAC
CTTAAAGACTGTATGCAATGGCTTGAAAACGCCGATGGATGGGTCAGCGG
TCTATTGTTTATACTAATGTTTACACTTGTATCGTTCCCAATGACGTGGG
GTTATATCTTCTTAAACGTGGCTGCGGGTTATTTGTATGGCTTTCTAATG
GGTTTAGTCACCGTAAACGTATCAGTTTTGGTCGGAGTTGCAGTCTCCCT
TGTCGTCTGCCGTAAAATTATCCGTGGATTTGTGACGTCAAAATTACAAT
CAGAACATTTGAAAGCTATCATAAAAGTGGTGGAAAGTCGACGTGGTTTC
AAAGTTCTTGTGCTAACCCGTTTGACACCTATCCCGTTTGGATTGCAAAA
CGGTTTATTTGCTATCACCAATATGCCGTTATCCAAATGTCTGCTCGGTT
CATTTATCGGTTTATTACCCACTCAAGCATTAAATGCGTATCTTGGATCG
ACATTACGTTCAATGGAAGATGTAGTACACAGTAACTCGGCTGGTGGTTA
TCTTATATTAGGTGTACAAGTTGGTATAAGTGGATTTTTGATGTGGTATG
TGATACGACGTGCTAGATACGAACTTAACAAAGCGTGTTTACCAAACGAA
AACGAATTTGATTATTCATCTTTAACGAACTTTACATCATCTTCGAGTAA
AGATAAAATTACAGTAAGGACTCCACAACCTTTACCGCTGACTAGGGCGA
ATAGTGGTAAAGGTTTTCGGTACTCGGCATTACCGACTTCCGACGATGAT
GACGTTACCATTAAAGGACAGAAAAATACTGCCAAGAAACAGGGCCATAA
AAGGGCGCATTCCGCCTCGGCTATATTATACGCTCTACAGAATCGAGATG
ACGATTAGTTTATTTGATTTCGTCAATAAAATTCTCAGATGGTCTTctta
tttttatatattatagtCTCTTCTTTTTCCCGTATTATTTTGATACTATC
GTGTCAATTAGGAAAATTGCCTGTAATTCGTCTAACCTTAAGAATAAAGC
GTTTTCCCCATCGATTAAACATTTTCTACCGACTTATGACATCATTACAA
AGTTTTAGTTAATATTATATTCGATAAATTATTCCAGTAAAGATTTTTCA
AGGATCTAACTATTGTTGGTCTTGTTGGTCATCTAGAAATGGTCTTTTAT
TTAGTCCAAGGTTGTTTACAAAGACTTAAAACAGCCTGGTATTATATATA
GACTTAAACTAAAACTTTAATTCAAGGATGAATAGACTCGCCGATACGTC
ATTGGTCTTATTTTTAGCCTCTGTCCGACGATCTCATTACTAGGAATAGT
TTAAATTATTTTACCCTTTCTTTTTgacattatatattttttcgttttat
aGTTGGAAATTATTTATATATCTTGAGTACTAAGGTCGGTCAGAGAAAGT
GTTTTTTTATACTGAAAACTATTTGTGAATAATCCCTAAATGAAATCATT
GAATGAGAAAAATTAGATAGAATTAAttttaatatgaaaatatttagatt
CTTACCTTATTTTCAAACCCTTGGCTAACTTTCAAG Run BLAST on NCBI transcript from alignment at scaffold_466:241779..246613+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067189 ID=TCONS_00067189|Name=TCONS_00067189|organism=Clytia hemisphaerica|type=transcript|length=4835bp|location=Sequence derived from alignment at scaffold_466:241779..246613+ (Clytia hemisphaerica)
tctcagcctgagcagttccttaacaattccttattttttgaaccattttc
agcctcgagttccttataaacgtgttccttataaaaaaaaaaacgtgtaa
tctttATTAGCTCTTGATTGTGGATCACGAATTTTAGACTCCCAGATTAG
TTTAACTGAAATCAGTGTAGATCAGATTCCTTGCTGACAAgcaacacttt
ttttataagaacatccaaagattttgaagccttcggacgttcttaacttt
tttggttttaagcctaaaaaagttcttaacatttcttatttttaccattt
ttgagtatttttgtgtaatttcctGAGAATGATGTATTAGATTccgcaaa
accttaaaatgtttttaaattgttcttaatattttagcatcgaagcctta
tgtccTCATCTAGTCTgctctcataaaaaaatatgtattaaTAATTAATT
CTAGGCATCATTACATGGAATTACTGTGTTCTTTGACACTGTTTGTAGAC
TTTACCTGCACATGAAAATCTCGGTTTACTATTTTCGAATAGAACAAAAG
CAGTGCAGTCACTTTGATCCTTGTCAAATCTCAGTCGCTCAGCGTAAAAA
GCCTCTACTCAAAAGAAAGACATTTTTGTCCCTGTCACTTCTGGCTCTTG
AGAGATATTTTGGTCTCATATTAATTTCCAAGCACACAGTAAGAAATTTA
ATCTTTTAAGCTAATAGAAAAGGTTTTTAATATTGCCTTTCAGAGTAATT
TGAAATTGTTCTAGattaataaaaaagaagaaatacacAAAAGATGTTTC
AGATTTAGACCCTAAACTTTTAGGACCTTTTTACAGTCTCATAGAACTTC
TTACATAAAATAATATGCTAATAATATAATGAGAACCACTCTCTATTGTG
ATTTTGAACTGACAAAACATAACTGAGATGTCGTGCAGCTATTAGGTGTG
CTAAATATAAAAGAGTTTCAATGCCATTTTTTTATTGTCTTAATCCATTA
GCGATTACTTGTCATCATTATTGACAATTATAAGTCAATTACAATAGTTT
AAAGATAATTACTGTTGTTGATGAGAATATTGTATTTTGAAGGAACTGTT
TTGCTCATTTACTCAATGAATAACTCCTTTTTTTTGTCAATCTGCTTATT
TTTCACATGGTTGATGCATCGTCGAAATGGGCGTTGTTTGTATTTTTTGG
GAACTTTCTTTCTTTACAGAATTCGTATGCCATTCCAAAGCTGTTTGACT
TACTAAAGTATTATATTTAGACTTATATGTACTGTACTTTTTGTCTGAAA
CCTAGATCCACTGAtttctataatttgaagatAGAAGTATCGGTTTTAGA
GTGTTTTTTTCAACAAGCAGTTGCTTGAATTAAAGTTAGTGACGTCTAAA
TAAATCTTCAAATTCTGTGATTTAACCTTGGAATGATTTCTTTGCTTTAT
TTTTAGGCCAGTGAAACACAAATATATACGTCATAATAAATACGACACCC
AAATTACAATAACACTAAATGGTGGGTCAAGCATTTACCGATGATGTCAT
CAATCCTGGCCGCTCGTGTCCGGATTTGACCACAACCGTGGAAATGTCCG
AGGTTAGTGACGTCATCCAAACACTAACGGATTCAGATAAAATTGTCACT
TCTGGCTCTATAACGCCGCACTCAAATGGGACAGTGGCAAAAAAGAGGCC
GGACTTGGCGTTAGATTTGAGTGATATTAGTTTTACGGAACCAACTCCCG
GGCAGAAATGTTTCGGTGAAAAATCAGATGTGGAACGAGTGTTAGACAGT
CGTTGTCCTTGTTTACAATCGAAATGTCTTCATTTATCTGGAACTTTCTT
ATTAATAGCAATTGTTGGTATTGttgttatatttttctttcgacGCTACC
TTAAAGACTGTATGCAATGGCTTGAAAACGCCGATGGATGGGTCAGCGGT
CTATTGTTTATACTAATGTTTACACTTGTATCGTTCCCAATGACGTGGGG
TTATATCTTCTTAAACGTGGCTGCGGGTTATTTGTATGGCTTTCTAATGG
GTTTAGTCACCGTAAACGTATCAGTTTTGGTCGGAGTTGCAGTCTCCCTT
GTCGTCTGCCGTAAAATTATCCGTGGATTTGTGACGTCAAAATTACAATC
AGAACATTTGAAAGCTATCATAAAAGTGGTGGAAAGTCGACGTGGTTTCA
AAGTTCTTGTGCTAACCCGTTTGACACCTATCCCGTTTGGATTGCAAAAC
GGTTTATTTGCTGTAAGTATTTCTTTCCGTTTTTCAAACAACCAAAGTCT
TCCTCTGTTATAGAGAGATAATATATAAAACACAATATTGCTCTGTTTgc
ttctacacgttttttcataagaacataaggcatcgagggccaaaaaaatt
aaaaacaagttaagaacattttaaggttttgtggACTCTCAAacggccaa
tttcttaagaaaatgaacaaaagaaTTCTCAcacaatggtgaaaataaga
acatttaggtaaggaaaatttttaggctcaaatctcaaaaagttatgaac
atcctgaggcttcaaaaatttaggatgttcttataaaaatcgtATATGTA
TAGGACACCCCGTTGAAAATCTCTTAAATTCTTATACCATCCTCACTTTT
ACTGGTAAGATATTGAAATAAGTGTCTCTTTTGTCACAGAAGCAAAACAT
CTTGTTAACATCTTGAAAAATGGTCTAATACCCAGAGTTATACTACGTAC
CCACATATGAATTAAACTATTCCATGCGATTTGTTATGAATGGGTGTGTG
TTTGTTTTATCTCTGTAAAAttactacagggtgtccctaattaaagtatc
gagtttgaacatgcgattgagtagaaaagtttgtgtgtgttatcgctaaa
atataagaacgtcttccatcacacaggcttattacaaaaggtagttacaa
cgtataaattaatcgtaatgacaaagaaaaaagagggagagcttaaaata
caattttgtgaacacgcacataaaactttctactcatagttgtgtttcga
ctcgatactttaattagggacaccctgtatatctCAAAGTTGCATTCCTA
TAATTACACCCTAATGATCTAATTCCCTGCTCTAATTTCACAATCACAAT
GCTATAATTGTGAAGAATTCAAAAATGACTTCGaattattttaacagttt
ttgatttttctccttGCCCAAGATAACGAGTTCATTGTGCTCAAAAAATG
ATTAGAATACCTTTATAAGGGTTTATTTTTGGCAACTCATTAAAACCGAT
TAAATAAAATAGTCCAACTGATTTGATCTAATGTTTAATTTGTCAAAATC
AACGCCCAAAACTCTTGTCCTTTTACAAGTCATTTTCAAAGAGTGCTAGA
ATCACCCGTGTTTCCGACTTGAAGATTtaactgaaaataaatttggtGGT
AGAAATACCCTCAGAATGGAAACTTCGAAAACACATTGGCTTTTACATCC
CCATTGGTATAGAATTTTTTCCCATGAGAGAAAACTTCCTCACTGAGACA
CTGAGACAGAGATGTGTTGGTAGTGCGAGAACTCTTACTGTAGTATATTA
GAGTTTCCCCTTTCAAGCTCtataactgaaaatataatCTCTACTTCCAA
TTCTATTTCCAGATCACCAATATGCCGTTATCCAAATGTCTGCTCGGTTC
ATTTATCGGTTTATTACCCACTCAAGCATTAAATGCGTATCTTGGATCGA
CATTACGTTCAATGGAAGATGTAGTACACAGTAACTCGGCTGGTGGTTAT
CTTATATTAGGTGTACAAGTTGGTATAAGTGGATTTTTGATGTGGTATGT
GATACGACGTGCTAGATACGAACTTAACAAAGCGTGTTTACCAAACGAAA
ACGAATTTGATTATTCATCTTTAACGAACTTTACATCATCTTCGAGTAAA
GATAAAATTACAGTAAGGACTCCACAACCTTTACCGCTGACTAGGGCGAA
TAGTGGTAAAGGTTTTCGGTACTCGGCATTACCGACTTCCGACGATGATG
ACGTTACCATTAAAGGACAGAAAAATACTGCCAAGAAACAGGGCCATAAA
AGGGCGCATTCCGCCTCGGCTATATTATACGCTCTACAGAATCGAGATGA
CGATTAGTTTATTTGATTTCGTCAATAAAATTCTCAGATGGTCTTcttat
ttttatatattatagtCTCTTCTTTTTCCCGTATTATTTTGATACTATCG
TGTCAATTAGGAAAATTGCCTGTAATTCGTCTAACCTTAAGAATAAAGCG
TTTTCCCCATCGATTAAACATTTTCTACCGACTTATGACATCATTACAAA
GTTTTAGTTAATATTATATTCGATAAATTATTCCAGTAAAGATTTTTCAA
GGATCTAACTATTGTTGGTCTTGTTGGTCATCTAGAAATGGTCTTTTATT
TAGTCCAAGGTTGTTTACAAAGACTTAAAACAGCCTGGTATTATATATAG
ACTTAAACTAAAACTTTAATTCAAGGATGAATAGACTCGCCGATACGTCA
TTGGTCTTATTTTTAGCCTCTGTCCGACGATCTCATTACTAGGAATAGTT
TAAATTATTTTACCCTTTCTTTTTgacattatatattttttcgttttata
GTTGGAAATTATTTATATATCTTGAGTACTAAGGTCGGTCAGAGAAAGTG
TTTTTTTATACTGAAAACTATTTGTGAATAATCCCTAAATGAAATCATTG
AATGAGAAAAATTAGATAGAATTAAttttaatatgaaaatatttagattC
TTACCTTATTTTCAAACCCTTGGCTAACTTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067189-exon-scaffold_466-1491911889:241779..243035 | TCONS_00067189-exon-scaffold_466-1491911889:241779..243035 | Clytia hemisphaerica | exon |
| TCONS_00067189-exon-scaffold_466-1510915933:241779..243035 | TCONS_00067189-exon-scaffold_466-1510915933:241779..243035 | Clytia hemisphaerica | exon |
| TCONS_00067189-exon-scaffold_466-1575043694:241779..243035 | TCONS_00067189-exon-scaffold_466-1575043694:241779..243035 | Clytia hemisphaerica | exon |
| TCONS_00067189-exon-scaffold_466-1491911889:243235..244040 | TCONS_00067189-exon-scaffold_466-1491911889:243235..244040 | Clytia hemisphaerica | exon |
| TCONS_00067189-exon-scaffold_466-1510915933:243235..244040 | TCONS_00067189-exon-scaffold_466-1510915933:243235..244040 | Clytia hemisphaerica | exon |
| TCONS_00067189-exon-scaffold_466-1575043694:243235..244040 | TCONS_00067189-exon-scaffold_466-1575043694:243235..244040 | Clytia hemisphaerica | exon |
| TCONS_00067189-exon-scaffold_466-1491911889:245441..246613 | TCONS_00067189-exon-scaffold_466-1491911889:245441..246613 | Clytia hemisphaerica | exon |
| TCONS_00067189-exon-scaffold_466-1510915933:245441..246613 | TCONS_00067189-exon-scaffold_466-1510915933:245441..246613 | Clytia hemisphaerica | exon |
| TCONS_00067189-exon-scaffold_466-1575043694:245441..246613 | TCONS_00067189-exon-scaffold_466-1575043694:245441..246613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:241779..246613 + |
Blast
BLAST of TCONS_00067189 vs. Swiss-Prot (Human)
Match: TMM64 (Transmembrane protein 64 OS=Homo sapiens GN=TMEM64 PE=2 SV=2) HSP 1 Score: 200.675 bits (509), Expect = 6.393e-56 Identity = 113/241 (46.89%), Postives = 161/241 (66.80%), Query Frame = 3
Query: 1596 DSRCPCLQSKCLHLSGTFL-LIAXXXXXXXXXXRRYLKDCMQWLENADGWVSGLLFILMFTLVSFPMTWGYIFLNVAAGYLYGFLMXXXXXXXXXXXXXXXXXXXCRKIIRGFVTSKLQS-EHLKAIIKVVESRRGFKVLVLTRLTPIPFGLQNGLFAITNMPLSKCLLGSFIGLLPTQALNAYLGSTLRSMEDVVHSNSAGGYLILGVQVGISGFLMWYVIRRARYELNKACLPNENEFD 2312
+ RC CL S C S + ++A + + RRYL + W+E+ D + LLF++ F +VSFP WGYI LNVAAGYLYGF++G+ + V VL+G ++ VVC++++ +V +++QS E L A+I+VVE G KV+ L RLTPIPFGLQN +F+IT++ L L+ S +GLLPTQ LN+YLG+TLR+MEDV+ S GY + +Q+ IS LM+YV+ RA+ ELN A + E E
Sbjct: 108 NWRCCCLGSTCWCRSLVLVCVLAALCFASLALVRRYLHHLLLWVESLDSLLGVLLFVVGFIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMMVGVLIGTFIAHVVCKRLLTAWVAARIQSSEKLSAVIRVVEGGSGLKVVALARLTPIPFGLQNAVFSITDLSLPNYLMASSVGLLPTQLLNSYLGTTLRTMEDVIAEQSVSGYFVFCLQIIISIGLMFYVVHRAQVELNAAIVACEMELK 348
The following BLAST results are available for this feature:
|
