TCONS_00067196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067196
Unique NameTCONS_00067196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067196 ID=TCONS_00067196|Name=TCONS_00067196|organism=Clytia hemisphaerica|type=transcript|length=2506bp
cccataaagaattaaaacaacaatttataatttaatataaaatacaaaag
caACTAAAAATTAGGATATAAAATGCGTCtacaaatgaaaacattttcta
gCAATATAAGCATAACATAATGTAAAGGATTAAGAAATATTATTATCACT
ACTAGTTTCAGAATTTATTtctaaaatgatttttaaaatgacATCACTCT
TTTAACAATTTTTGTAATATTTAAGATATAGGTTAAAACAAAAACGAGAA
ATTACGATTGCAACATAGATCAGTTTCCTTGCACCAGACTTCAGTTACCT
TAAGGTTTCCTTCAAATTTTCAcattaaaagaaaattcattctaatttaa
aacgaaaaaaaaaaaactaacaaaatccAAATTATCATACACTTCTCCAT
TAAAAAATACTTGTTTTTATATTCCGGCTTTGAAAATACTTCATAATTTT
TAATTACTAATTGTTCCAGGCATTGATAAAGCAAGTTGCTTGATTATAAT
TTATCCCAGTTCACAGGTCAATAAAtcttttccaaaaaacatttaccagg
aaataaaaaattgttcGGTAAAAATCGATGCATTTTATTCACTCCTTTCT
TATCAACAAAAGCTTTATTAATAGCAAGGTAATCCTTTCAAAACAacaat
gcattgtgggattgtttcgggggtattacaatagaaatctcttaggaatt
ctactgtaatacccccgaaataATCCCATAATGAATCGCTGTTTTAGAAA
GATCAAATACTCTGATAAGGTCTATTAGCAAATACCCAGGAGTTTGTACT
GTATGTTGTATGATGGTGAACAGGAAAAAGAATAGCTACAATTATCAACA
AGCATTTTAGCACAGCATTTCTAAAAATTCATATAATGACCAAAGTTCTG
AAAAGAGCCACAGCATAGATGAAAATGAGATACTGACCAGAAGGAACTGG
GAGGAATCTTTTTTTGTATTCAAACTCTAAAACCTTTGTTTACGTGAGCA
ATTGTAATTCATCATCATCTCCTTGTTCCTCGTCCATTTCATAACGCAAT
GGATCATTCAATGCAATGTCATTATAATATGCAGGTTGACTGCTGAGTCT
TCTCTTCTTTTTAAGATACAAACCAACTAGGAATACTGTTAAAATAATAA
GAACAGCTAAGATGATTAATGCAACTTTAGCTGGACTAGCTGATGGTTTC
TTGTCCGATGTTTTGCCATCTCCTGTTCCTTTCCCAGATGTTGTTTTAAC
GGGTGTTGTATCAGGTGCTTTGGTAGTTGCTGCTGTTGTAGCAGGTGCTT
TGGTAGTTGCTTTTGTGGTTGAAGGTTTGGCGGTTGTTATTGTTTCAGAT
GGTGTACAGCCGTGATTTGGGAAACTCACAGTGATGTTTTGAGTAGCATC
TGCTTTGTATTTACCAGAAATCTTTGCGGAAATAGTATTCAGAAGAATAA
TGTTTTCCTTTGTGATTTTGGTGAAGTAGCTTTTTGTATTGAGATTTAGG
AGAACATTTTCAGCTATTTCATGCTTGAGCTCTATATCAGGATCAAACTT
GTTTACAAGGAACTTTGTTTGGCTTATTGATATTGATTCTGTATGATGGA
TGGACAAAGTTAAATTGTATTCTGGTAGCTTATTTGGACAGGACATGGAA
CCGTTGAATGAGAAATGCATAAGATAAGGTTTTTCAATTGTTCCAACACA
ATACGGTAATAAGCAATCTTCAGTTAAACCCCAACAAAATGTCTTCTCAG
ATTTAATAAGTGAGAAGCGTGTTgtcatttcattttcaagagCATTAATA
CCTTTACAATTACACACCATCGCTAACATTTCTGGCTTCAATGAAAACTT
TTCTGCAATTGAAACCTTTGAGTTATTAATTAAATCAAGGTTGAAAttca
ttgataaatttttcattccgtTGCCTTCATTTGTAAACAGGACATCAACT
GATAGCTTGATTTGATTATCATCAACAATTGTACTTAACTGTTGTTTGGT
ATTCacattaaactttttgttcgCTGTGGCACTAGCTCCCTCATAATGAA
TCTCAAAAACCTCCTTACTGTCTTTACAATGCCAAAACCCAGCCATGGAG
AAAAACTTCTTGTCAGGTTCATCTTTATGAAAAACATTGCAAATGAACGA
TGAGCATTTCAAGCCATCAGGGTTGCACTTCATAGTCAAGTTTTTCACTT
GGTTTGTCATATCGTTGAGTGCTTTTTGAAGACCACAAGACAGACATAAT
GAGCACAATGAGAGGCTTAGAAATATCACATTTAATAATTTCAATGTTGC
CATCTTAGCACATTTAATTAATAGTAAATGCTGAAAGAGAGATAAAATTA
TTGAACCACTATTTATAATATTTAATATGGGAAATCTTAATAATATGCAA
GAGAGGCTTTGTCAAATGAGAGCAATCAGAGGGGATATGTAGCTGTAGCT
GTGGAGGCCcggaatcttcgagttagaaaactttgagttaggaattttcg
agttag
Run BLAST on NCBI

transcript from alignment at scaffold_466:296558..299213+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067196 ID=TCONS_00067196|Name=TCONS_00067196|organism=Clytia hemisphaerica|type=transcript|length=2656bp|location=Sequence derived from alignment at scaffold_466:296558..299213+ (Clytia hemisphaerica)
cccataaagaattaaaacaacaatttataatttaatataaaatacaaaag
caACTAAAAATTAGGATATAAAATGCGTCtacaaatgaaaacattttcta
gCAATATAAGCATAACATAATGTAAAGGATTAAGAAATATTATTATCACT
ACTAGTTTCAGAATTTATTtctaaaatgatttttaaaatgacATCACTCT
TTTAACAATTTTTGTAATATTTAAGATATAGGTTAAAACAAAAACGAGAA
ATTACGATTGCAACATAGATCAGTTTCCTTGCACCAGACTTCAGTTACCT
TAAGGTTTCCTTCAAATTTTCAcattaaaagaaaattcattctaatttaa
aacgaaaaaaaaaaaactaacaaaatccAAATTATCATACACTTCTCCAT
TAAAAAATACTTGTTTTTATATTCCGGCTTTGAAAATACTTCATAATTTT
TAATTACTAATTGTTCCAGGCATTGATAAAGCAAGTTGCTTGATTATAAT
TTATCCCAGTTCACAGGTCAATAAAtcttttccaaaaaacatttaccagg
aaataaaaaattgttcGGTAAAAATCGATGCATTTTATTCACTCCTTTCT
TATCAACAAAAGCTTTATTAATAGCAAGGTAATCCTTTCAAAACAacaat
gcattgtgggattgtttcgggggtattacaatagaaatctcttaggaatt
ctactgtaatacccccgaaataATCCCATAATGAATCGCTGTTTTAGAAA
GATCAAATACTCTGATAAGGTCTATTAGCAAATACCCAGGAGTTTGTACT
GTATGTTGTATGATGGTGAACAGGAAAAAGAATAGCTACAATTATCAACA
AGCATTTTAGCACAGCATTTCTAAAAATTCATATAATGACCAAAGTTCTG
AAAAGAGCCACAGCATAGATGAAAATGAGATACTGACCAGAAGGAACTGG
GAGGAATCTTTTTTTGTATTCAAACTCTAAAACCTTTGTTTACGTGAGCA
ATTGTAATTCATCATCATCTCCTTGTTCCTCGTCCATTTCATAACGCAAT
GGATCATTCAATGCAATGTCATTATAATATGCAGGTTGACTGCTGAGTCT
TCTCTTCTTTTTAAGATACAAACCAACTAGGAATACTGTTAAAATAATAA
GAACAGCTAAGATGATTAATGCAACTTTAGCTGGACTAGCTGATGGTTTC
TTGTCCGATGTTTTGCCATCTCCTGTTCCTTTCCCAGATGTTGTTTTAAC
GGGTGTTGTATCAGGTGCTTTGGTAGTTGATGCTGTTGTACCAGGTGCTT
TGGTAGTTGCTGCTGTTGTATCAGGTGCTTTAGTAGTTGCTGCTGTTGTA
TCAGGTGCTTCGGTAGTTGCTGCTGTTGTATCAGGTGCTTTAGTAGTTGC
TGCTGTTGTAGCAGGTGCTTTGGTAGTTGCTGCTGTTGTAGCAGGTGCTT
TGGTAGTTGCTTTTGTGGTTGAAGGTTTGGCGGTTGTTATTGTTTCAGAT
GGTGTACAGCCGTGATTTGGGAAACTCACAGTGATGTTTTGAGTAGCATC
TGCTTTGTATTTACCAGAAATCTTTGCGGAAATAGTATTCAGAAGAATAA
TGTTTTCCTTTGTGATTTTGGTGAAGTAGCTTTTTGTATTGAGATTTAGG
AGAACATTTTCAGCTATTTCATGCTTGAGCTCTATATCAGGATCAAACTT
GTTTACAAGGAACTTTGTTTGGCTTATTGATATTGATTCTGTATGATGGA
TGGACAAAGTTAAATTGTATTCTGGTAGCTTATTTGGACAGGACATGGAA
CCGTTGAATGAGAAATGCATAAGATAAGGTTTTTCAATTGTTCCAACACA
ATACGGTAATAAGCAATCTTCAGTTAAACCCCAACAAAATGTCTTCTCAG
ATTTAATAAGTGAGAAGCGTGTTgtcatttcattttcaagagCATTAATA
CCTTTACAATTACACACCATCGCTAACATTTCTGGCTTCAATGAAAACTT
TTCTGCAATTGAAACCTTTGAGTTATTAATTAAATCAAGGTTGAAAttca
ttgataaatttttcattccgtTGCCTTCATTTGTAAACAGGACATCAACT
GATAGCTTGATTTGATTATCATCAACAATTGTACTTAACTGTTGTTTGGT
ATTCacattaaactttttgttcgCTGTGGCACTAGCTCCCTCATAATGAA
TCTCAAAAACCTCCTTACTGTCTTTACAATGCCAAAACCCAGCCATGGAG
AAAAACTTCTTGTCAGGTTCATCTTTATGAAAAACATTGCAAATGAACGA
TGAGCATTTCAAGCCATCAGGGTTGCACTTCATAGTCAAGTTTTTCACTT
GGTTTGTCATATCGTTGAGTGCTTTTTGAAGACCACAAGACAGACATAAT
GAGCACAATGAGAGGCTTAGAAATATCACATTTAATAATTTCAATGTTGC
CATCTTAGCACATTTAATTAATAGTAAATGCTGAAAGAGAGATAAAATTA
TTGAACCACTATTTATAATATTTAATATGGGAAATCTTAATAATATGCAA
GAGAGGCTTTGTCAAATGAGAGCAATCAGAGGGGATATGTAGCTGTAGCT
GTGGAGGCCcggaatcttcgagttagaaaactttgagttaggaattttcg
agttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041979XLOC_041979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067196-exon-scaffold_466-1491911889:296558..297821TCONS_00067196-exon-scaffold_466-1491911889:296558..297821Clytia hemisphaericaexon
TCONS_00067196-exon-scaffold_466-1510915933:296558..297821TCONS_00067196-exon-scaffold_466-1510915933:296558..297821Clytia hemisphaericaexon
TCONS_00067196-exon-scaffold_466-1575043694:296558..297821TCONS_00067196-exon-scaffold_466-1575043694:296558..297821Clytia hemisphaericaexon
TCONS_00067196-exon-scaffold_466-1491911889:297972..299213TCONS_00067196-exon-scaffold_466-1491911889:297972..299213Clytia hemisphaericaexon
TCONS_00067196-exon-scaffold_466-1510915933:297972..299213TCONS_00067196-exon-scaffold_466-1510915933:297972..299213Clytia hemisphaericaexon
TCONS_00067196-exon-scaffold_466-1575043694:297972..299213TCONS_00067196-exon-scaffold_466-1575043694:297972..299213Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:296558..299213 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.35618e-05	3.34801e-05	0.000621779	0	0	0	0.167816	0	0.377041	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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