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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067197 ID=TCONS_00067197|Name=TCONS_00067197|organism=Clytia hemisphaerica|type=transcript|length=2536bp
cccataaagaattaaaacaacaatttataatttaatataaaatacaaaag
caACTAAAAATTAGGATATAAAATGCGTCtacaaatgaaaacattttcta
gCAATATAAGCATAACATAATGTAAAGGATTAAGAAATATTATTATCACT
ACTAGTTTCAGAATTTATTtctaaaatgatttttaaaatgacATCACTCT
TTTAACAATTTTTGTAATATTTAAGATATAGGTTAAAACAAAAACGAGAA
ATTACGATTGCAACATAGATCAGTTTCCTTGCACCAGACTTCAGTTACCT
TAAGGTTTCCTTCAAATTTTCAcattaaaagaaaattcattctaatttaa
aacgaaaaaaaaaaaactaacaaaatccAAATTATCATACACTTCTCCAT
TAAAAAATACTTGTTTTTATATTCCGGCTTTGAAAATACTTCATAATTTT
TAATTACTAATTGTTCCAGGCATTGATAAAGCAAGTTGCTTGATTATAAT
TTATCCCAGTTCACAGGTCAATAAAtcttttccaaaaaacatttaccagg
aaataaaaaattgttcGGTAAAAATCGATGCATTTTATTCACTCCTTTCT
TATCAACAAAAGCTTTATTAATAGCAAGGTAATCCTTTCAAAACAacaat
gcattgtgggattgtttcgggggtattacaatagaaatctcttaggaatt
ctactgtaatacccccgaaataATCCCATAATGAATCGCTGTTTTAGAAA
GATCAAATACTCTGATAAGGTCTATTAGCAAATACCCAGGAGTTTGTACT
GTATGTTGTATGATGGTGAACAGGAAAAAGAATAGCTACAATTATCAACA
AGCATTTTAGCACAGCATTTCTAAAAATTCATATAATGACCAAAGTTCTG
AAAAGAGCCACAGCATAGATGAAAATGAGATACTGACCAGAAGGAACTGG
GAGGAATCTTTTTTTGTATTCAAACTCTAAAACCTTTGTTTACGTGAGCA
ATTGTAATTCATCATCATCTCCTTGTTCCTCGTCCATTTCATAACGCAAT
GGATCATTCAATGCAATGTCATTATAATATGCAGGTTGACTGCTGAGTCT
TCTCTTCTTTTTAAGATACAAACCAACTAGGAATACTGTTAAAATAATAA
GAACAGCTAAGATGATTAATGCAACTTTAGCTGGACTAGCTGATGGTTTC
TTGTCCGATGTTTTGCCATCTCCTGTTCCTTTCCCAGATGTTGTTTTAAC
GGGTGTTGTATCAGGTGCTTCGGTAGTTGCTGCTGTTGTATCAGGTGCTT
TGGTAGTTGCTGCTGTTGTAGCAGGTGCTTTGGTAGTTGCTTTTGTGGTT
GAAGGTTTGGCGGTTGTTATTGTTTCAGATGGTGTACAGCCGTGATTTGG
GAAACTCACAGTGATGTTTTGAGTAGCATCTGCTTTGTATTTACCAGAAA
TCTTTGCGGAAATAGTATTCAGAAGAATAATGTTTTCCTTTGTGATTTTG
GTGAAGTAGCTTTTTGTATTGAGATTTAGGAGAACATTTTCAGCTATTTC
ATGCTTGAGCTCTATATCAGGATCAAACTTGTTTACAAGGAACTTTGTTT
GGCTTATTGATATTGATTCTGTATGATGGATGGACAAAGTTAAATTGTAT
TCTGGTAGCTTATTTGGACAGGACATGGAACCGTTGAATGAGAAATGCAT
AAGATAAGGTTTTTCAATTGTTCCAACACAATACGGTAATAAGCAATCTT
CAGTTAAACCCCAACAAAATGTCTTCTCAGATTTAATAAGTGAGAAGCGT
GTTgtcatttcattttcaagagCATTAATACCTTTACAATTACACACCAT
CGCTAACATTTCTGGCTTCAATGAAAACTTTTCTGCAATTGAAACCTTTG
AGTTATTAATTAAATCAAGGTTGAAAttcattgataaatttttcattccg
tTGCCTTCATTTGTAAACAGGACATCAACTGATAGCTTGATTTGATTATC
ATCAACAATTGTACTTAACTGTTGTTTGGTATTCacattaaactttttgt
tcgCTGTGGCACTAGCTCCCTCATAATGAATCTCAAAAACCTCCTTACTG
TCTTTACAATGCCAAAACCCAGCCATGGAGAAAAACTTCTTGTCAGGTTC
ATCTTTATGAAAAACATTGCAAATGAACGATGAGCATTTCAAGCCATCAG
GGTTGCACTTCATAGTCAAGTTTTTCACTTGGTTTGTCATATCGTTGAGT
GCTTTTTGAAGACCACAAGACAGACATAATGAGCACAATGAGAGGCTTAG
AAATATCACATTTAATAATTTCAATGTTGCCATCTTAGCACATTTAATTA
ATAGTAAATGCTGAAAGAGAGATAAAATTATTGAACCACTATTTATAATA
TTTAATATGGGAAATCTTAATAATATGCAAGAGAGGCTTTGTCAAATGAG
AGCAATCAGAGGGGATATGTAGCTGTAGCTGTGGAGGCCcggaatcttcg
agttagaaaactttgagttaggaattttcgagttag Run BLAST on NCBI transcript from alignment at scaffold_466:296558..299213+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067197 ID=TCONS_00067197|Name=TCONS_00067197|organism=Clytia hemisphaerica|type=transcript|length=2656bp|location=Sequence derived from alignment at scaffold_466:296558..299213+ (Clytia hemisphaerica)
cccataaagaattaaaacaacaatttataatttaatataaaatacaaaag
caACTAAAAATTAGGATATAAAATGCGTCtacaaatgaaaacattttcta
gCAATATAAGCATAACATAATGTAAAGGATTAAGAAATATTATTATCACT
ACTAGTTTCAGAATTTATTtctaaaatgatttttaaaatgacATCACTCT
TTTAACAATTTTTGTAATATTTAAGATATAGGTTAAAACAAAAACGAGAA
ATTACGATTGCAACATAGATCAGTTTCCTTGCACCAGACTTCAGTTACCT
TAAGGTTTCCTTCAAATTTTCAcattaaaagaaaattcattctaatttaa
aacgaaaaaaaaaaaactaacaaaatccAAATTATCATACACTTCTCCAT
TAAAAAATACTTGTTTTTATATTCCGGCTTTGAAAATACTTCATAATTTT
TAATTACTAATTGTTCCAGGCATTGATAAAGCAAGTTGCTTGATTATAAT
TTATCCCAGTTCACAGGTCAATAAAtcttttccaaaaaacatttaccagg
aaataaaaaattgttcGGTAAAAATCGATGCATTTTATTCACTCCTTTCT
TATCAACAAAAGCTTTATTAATAGCAAGGTAATCCTTTCAAAACAacaat
gcattgtgggattgtttcgggggtattacaatagaaatctcttaggaatt
ctactgtaatacccccgaaataATCCCATAATGAATCGCTGTTTTAGAAA
GATCAAATACTCTGATAAGGTCTATTAGCAAATACCCAGGAGTTTGTACT
GTATGTTGTATGATGGTGAACAGGAAAAAGAATAGCTACAATTATCAACA
AGCATTTTAGCACAGCATTTCTAAAAATTCATATAATGACCAAAGTTCTG
AAAAGAGCCACAGCATAGATGAAAATGAGATACTGACCAGAAGGAACTGG
GAGGAATCTTTTTTTGTATTCAAACTCTAAAACCTTTGTTTACGTGAGCA
ATTGTAATTCATCATCATCTCCTTGTTCCTCGTCCATTTCATAACGCAAT
GGATCATTCAATGCAATGTCATTATAATATGCAGGTTGACTGCTGAGTCT
TCTCTTCTTTTTAAGATACAAACCAACTAGGAATACTGTTAAAATAATAA
GAACAGCTAAGATGATTAATGCAACTTTAGCTGGACTAGCTGATGGTTTC
TTGTCCGATGTTTTGCCATCTCCTGTTCCTTTCCCAGATGTTGTTTTAAC
GGGTGTTGTATCAGGTGCTTTGGTAGTTGATGCTGTTGTACCAGGTGCTT
TGGTAGTTGCTGCTGTTGTATCAGGTGCTTTAGTAGTTGCTGCTGTTGTA
TCAGGTGCTTCGGTAGTTGCTGCTGTTGTATCAGGTGCTTTAGTAGTTGC
TGCTGTTGTAGCAGGTGCTTTGGTAGTTGCTGCTGTTGTAGCAGGTGCTT
TGGTAGTTGCTTTTGTGGTTGAAGGTTTGGCGGTTGTTATTGTTTCAGAT
GGTGTACAGCCGTGATTTGGGAAACTCACAGTGATGTTTTGAGTAGCATC
TGCTTTGTATTTACCAGAAATCTTTGCGGAAATAGTATTCAGAAGAATAA
TGTTTTCCTTTGTGATTTTGGTGAAGTAGCTTTTTGTATTGAGATTTAGG
AGAACATTTTCAGCTATTTCATGCTTGAGCTCTATATCAGGATCAAACTT
GTTTACAAGGAACTTTGTTTGGCTTATTGATATTGATTCTGTATGATGGA
TGGACAAAGTTAAATTGTATTCTGGTAGCTTATTTGGACAGGACATGGAA
CCGTTGAATGAGAAATGCATAAGATAAGGTTTTTCAATTGTTCCAACACA
ATACGGTAATAAGCAATCTTCAGTTAAACCCCAACAAAATGTCTTCTCAG
ATTTAATAAGTGAGAAGCGTGTTgtcatttcattttcaagagCATTAATA
CCTTTACAATTACACACCATCGCTAACATTTCTGGCTTCAATGAAAACTT
TTCTGCAATTGAAACCTTTGAGTTATTAATTAAATCAAGGTTGAAAttca
ttgataaatttttcattccgtTGCCTTCATTTGTAAACAGGACATCAACT
GATAGCTTGATTTGATTATCATCAACAATTGTACTTAACTGTTGTTTGGT
ATTCacattaaactttttgttcgCTGTGGCACTAGCTCCCTCATAATGAA
TCTCAAAAACCTCCTTACTGTCTTTACAATGCCAAAACCCAGCCATGGAG
AAAAACTTCTTGTCAGGTTCATCTTTATGAAAAACATTGCAAATGAACGA
TGAGCATTTCAAGCCATCAGGGTTGCACTTCATAGTCAAGTTTTTCACTT
GGTTTGTCATATCGTTGAGTGCTTTTTGAAGACCACAAGACAGACATAAT
GAGCACAATGAGAGGCTTAGAAATATCACATTTAATAATTTCAATGTTGC
CATCTTAGCACATTTAATTAATAGTAAATGCTGAAAGAGAGATAAAATTA
TTGAACCACTATTTATAATATTTAATATGGGAAATCTTAATAATATGCAA
GAGAGGCTTTGTCAAATGAGAGCAATCAGAGGGGATATGTAGCTGTAGCT
GTGGAGGCCcggaatcttcgagttagaaaactttgagttaggaattttcg
agttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067197-exon-scaffold_466-1491911889:296558..297821 | TCONS_00067197-exon-scaffold_466-1491911889:296558..297821 | Clytia hemisphaerica | exon |
| TCONS_00067197-exon-scaffold_466-1510915933:296558..297821 | TCONS_00067197-exon-scaffold_466-1510915933:296558..297821 | Clytia hemisphaerica | exon |
| TCONS_00067197-exon-scaffold_466-1575043694:296558..297821 | TCONS_00067197-exon-scaffold_466-1575043694:296558..297821 | Clytia hemisphaerica | exon |
| TCONS_00067197-exon-scaffold_466-1491911889:297912..297941 | TCONS_00067197-exon-scaffold_466-1491911889:297912..297941 | Clytia hemisphaerica | exon |
| TCONS_00067197-exon-scaffold_466-1510915933:297912..297941 | TCONS_00067197-exon-scaffold_466-1510915933:297912..297941 | Clytia hemisphaerica | exon |
| TCONS_00067197-exon-scaffold_466-1575043694:297912..297941 | TCONS_00067197-exon-scaffold_466-1575043694:297912..297941 | Clytia hemisphaerica | exon |
| TCONS_00067197-exon-scaffold_466-1491911889:297972..299213 | TCONS_00067197-exon-scaffold_466-1491911889:297972..299213 | Clytia hemisphaerica | exon |
| TCONS_00067197-exon-scaffold_466-1510915933:297972..299213 | TCONS_00067197-exon-scaffold_466-1510915933:297972..299213 | Clytia hemisphaerica | exon |
| TCONS_00067197-exon-scaffold_466-1575043694:297972..299213 | TCONS_00067197-exon-scaffold_466-1575043694:297972..299213 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:296558..299213 + |
Blast
The following BLAST results are available for this feature:
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