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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067198 ID=TCONS_00067198|Name=TCONS_00067198|organism=Clytia hemisphaerica|type=transcript|length=2483bp
CTAAAAATTAGGATATAAAATGCGTCtacaaatgaaaacattttctagCA
ATATAAGCATAACATAATGTAAAGGATTAAGAAATATTATTATCACTACT
AGTTTCAGAATTTATTtctaaaatgatttttaaaatgacATCACTCTTTT
AACAATTTTTGTAATATTTAAGATATAGGTTAAAACAAAAACGAGAAATT
ACGATTGCAACATAGATCAGTTTCCTTGCACCAGACTTCAGTTACCTTAA
GGTTTCCTTCAAATTTTCAcattaaaagaaaattcattctaatttaaaac
gaaaaaaaaaaaactaacaaaatccAAATTATCATACACTTCTCCATTAA
AAAATACTTGTTTTTATATTCCGGCTTTGAAAATACTTCATAATTTTTAA
TTACTAATTGTTCCAGGCATTGATAAAGCAAGTTGCTTGATTATAATTTA
TCCCAGTTCACAGGTCAATAAAtcttttccaaaaaacatttaccaggaaa
taaaaaattgttcGGTAAAAATCGATGCATTTTATTCACTCCTTTCTTAT
CAACAAAAGCTTTATTAATAGCAAGGTAATCCTTTCAAAACAacaatgca
ttgtgggattgtttcgggggtattacaatagaaatctcttaggaattcta
ctgtaatacccccgaaataATCCCATAATGAATCGCTGTTTTAGAAAGAT
CAAATACTCTGATAAGGTCTATTAGCAAATACCCAGGAGTTTGTACTGTA
TGTTGTATGATGGTGAACAGGAAAAAGAATAGCTACAATTATCAACAAGC
ATTTTAGCACAGCATTTCTAAAAATTCATATAATGACCAAAGTTCTGAAA
AGAGCCACAGCATAGATGAAAATGAGATACTGACCAGAAGGAACTGGGAG
GAATCTTTTTTTGTATTCAAACTCTAAAACCTTTGTTTACGTGAGCAATT
GTAATTCATCATCATCTCCTTGTTCCTCGTCCATTTCATAACGCAATGGA
TCATTCAATGCAATGTCATTATAATATGCAGGTTGACTGCTGAGTCTTCT
CTTCTTTTTAAGATACAAACCAACTAGGAATACTGTTAAAATAATAAGAA
CAGCTAAGATGATTAATGCAACTTTAGCTGGACTAGCTGATGGTTTCTTG
TCCGATGTTTTGCCATCTCCTGTTCCTTTCCCAGATGTTGTTTTAACGGG
TGTTGTATCAGGTGCTTTGGTAGTTGCTGCTGTTGTATCAGGTGCTTTGG
TAGTTGCTGCTGTTGTAGCAGGTGCTTTGGTAGTTGCTTTTGTGGTTGAA
GGTTTGGCGGTTGTTATTGTTTCAGATGGTGTACAGCCGTGATTTGGGAA
ACTCACAGTGATGTTTTGAGTAGCATCTGCTTTGTATTTACCAGAAATCT
TTGCGGAAATAGTATTCAGAAGAATAATGTTTTCCTTTGTGATTTTGGTG
AAGTAGCTTTTTGTATTGAGATTTAGGAGAACATTTTCAGCTATTTCATG
CTTGAGCTCTATATCAGGATCAAACTTGTTTACAAGGAACTTTGTTTGGC
TTATTGATATTGATTCTGTATGATGGATGGACAAAGTTAAATTGTATTCT
GGTAGCTTATTTGGACAGGACATGGAACCGTTGAATGAGAAATGCATAAG
ATAAGGTTTTTCAATTGTTCCAACACAATACGGTAATAAGCAATCTTCAG
TTAAACCCCAACAAAATGTCTTCTCAGATTTAATAAGTGAGAAGCGTGTT
gtcatttcattttcaagagCATTAATACCTTTACAATTACACACCATCGC
TAACATTTCTGGCTTCAATGAAAACTTTTCTGCAATTGAAACCTTTGAGT
TATTAATTAAATCAAGGTTGAAAttcattgataaatttttcattccgtTG
CCTTCATTTGTAAACAGGACATCAACTGATAGCTTGATTTGATTATCATC
AACAATTGTACTTAACTGTTGTTTGGTATTCacattaaactttttgttcg
CTGTGGCACTAGCTCCCTCATAATGAATCTCAAAAACCTCCTTACTGTCT
TTACAATGCCAAAACCCAGCCATGGAGAAAAACTTCTTGTCAGGTTCATC
TTTATGAAAAACATTGCAAATGAACGATGAGCATTTCAAGCCATCAGGGT
TGCACTTCATAGTCAAGTTTTTCACTTGGTTTGTCATATCGTTGAGTGCT
TTTTGAAGACCACAAGACAGACATAATGAGCACAATGAGAGGCTTAGAAA
TATCACATTTAATAATTTCAATGTTGCCATCTTAGCACATTTAATTAATA
GTAAATGCTGAAAGAGAGATAAAATTATTGAACCACTATTTATAATATTT
AATATGGGAAATCTTAATAATATGCAAGAGAGGCTTTGTCAAATGAGAGC
AATCAGAGGGGATATGTAGCTGTAGCTGTGGAGGCCcggaatcttcgagt
tagaaaactttgagttaggaattttcgagttag Run BLAST on NCBI transcript from alignment at scaffold_466:296611..299213+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067198 ID=TCONS_00067198|Name=TCONS_00067198|organism=Clytia hemisphaerica|type=transcript|length=2603bp|location=Sequence derived from alignment at scaffold_466:296611..299213+ (Clytia hemisphaerica)
CTAAAAATTAGGATATAAAATGCGTCtacaaatgaaaacattttctagCA
ATATAAGCATAACATAATGTAAAGGATTAAGAAATATTATTATCACTACT
AGTTTCAGAATTTATTtctaaaatgatttttaaaatgacATCACTCTTTT
AACAATTTTTGTAATATTTAAGATATAGGTTAAAACAAAAACGAGAAATT
ACGATTGCAACATAGATCAGTTTCCTTGCACCAGACTTCAGTTACCTTAA
GGTTTCCTTCAAATTTTCAcattaaaagaaaattcattctaatttaaaac
gaaaaaaaaaaaactaacaaaatccAAATTATCATACACTTCTCCATTAA
AAAATACTTGTTTTTATATTCCGGCTTTGAAAATACTTCATAATTTTTAA
TTACTAATTGTTCCAGGCATTGATAAAGCAAGTTGCTTGATTATAATTTA
TCCCAGTTCACAGGTCAATAAAtcttttccaaaaaacatttaccaggaaa
taaaaaattgttcGGTAAAAATCGATGCATTTTATTCACTCCTTTCTTAT
CAACAAAAGCTTTATTAATAGCAAGGTAATCCTTTCAAAACAacaatgca
ttgtgggattgtttcgggggtattacaatagaaatctcttaggaattcta
ctgtaatacccccgaaataATCCCATAATGAATCGCTGTTTTAGAAAGAT
CAAATACTCTGATAAGGTCTATTAGCAAATACCCAGGAGTTTGTACTGTA
TGTTGTATGATGGTGAACAGGAAAAAGAATAGCTACAATTATCAACAAGC
ATTTTAGCACAGCATTTCTAAAAATTCATATAATGACCAAAGTTCTGAAA
AGAGCCACAGCATAGATGAAAATGAGATACTGACCAGAAGGAACTGGGAG
GAATCTTTTTTTGTATTCAAACTCTAAAACCTTTGTTTACGTGAGCAATT
GTAATTCATCATCATCTCCTTGTTCCTCGTCCATTTCATAACGCAATGGA
TCATTCAATGCAATGTCATTATAATATGCAGGTTGACTGCTGAGTCTTCT
CTTCTTTTTAAGATACAAACCAACTAGGAATACTGTTAAAATAATAAGAA
CAGCTAAGATGATTAATGCAACTTTAGCTGGACTAGCTGATGGTTTCTTG
TCCGATGTTTTGCCATCTCCTGTTCCTTTCCCAGATGTTGTTTTAACGGG
TGTTGTATCAGGTGCTTTGGTAGTTGATGCTGTTGTACCAGGTGCTTTGG
TAGTTGCTGCTGTTGTATCAGGTGCTTTAGTAGTTGCTGCTGTTGTATCA
GGTGCTTCGGTAGTTGCTGCTGTTGTATCAGGTGCTTTAGTAGTTGCTGC
TGTTGTAGCAGGTGCTTTGGTAGTTGCTGCTGTTGTAGCAGGTGCTTTGG
TAGTTGCTTTTGTGGTTGAAGGTTTGGCGGTTGTTATTGTTTCAGATGGT
GTACAGCCGTGATTTGGGAAACTCACAGTGATGTTTTGAGTAGCATCTGC
TTTGTATTTACCAGAAATCTTTGCGGAAATAGTATTCAGAAGAATAATGT
TTTCCTTTGTGATTTTGGTGAAGTAGCTTTTTGTATTGAGATTTAGGAGA
ACATTTTCAGCTATTTCATGCTTGAGCTCTATATCAGGATCAAACTTGTT
TACAAGGAACTTTGTTTGGCTTATTGATATTGATTCTGTATGATGGATGG
ACAAAGTTAAATTGTATTCTGGTAGCTTATTTGGACAGGACATGGAACCG
TTGAATGAGAAATGCATAAGATAAGGTTTTTCAATTGTTCCAACACAATA
CGGTAATAAGCAATCTTCAGTTAAACCCCAACAAAATGTCTTCTCAGATT
TAATAAGTGAGAAGCGTGTTgtcatttcattttcaagagCATTAATACCT
TTACAATTACACACCATCGCTAACATTTCTGGCTTCAATGAAAACTTTTC
TGCAATTGAAACCTTTGAGTTATTAATTAAATCAAGGTTGAAAttcattg
ataaatttttcattccgtTGCCTTCATTTGTAAACAGGACATCAACTGAT
AGCTTGATTTGATTATCATCAACAATTGTACTTAACTGTTGTTTGGTATT
CacattaaactttttgttcgCTGTGGCACTAGCTCCCTCATAATGAATCT
CAAAAACCTCCTTACTGTCTTTACAATGCCAAAACCCAGCCATGGAGAAA
AACTTCTTGTCAGGTTCATCTTTATGAAAAACATTGCAAATGAACGATGA
GCATTTCAAGCCATCAGGGTTGCACTTCATAGTCAAGTTTTTCACTTGGT
TTGTCATATCGTTGAGTGCTTTTTGAAGACCACAAGACAGACATAATGAG
CACAATGAGAGGCTTAGAAATATCACATTTAATAATTTCAATGTTGCCAT
CTTAGCACATTTAATTAATAGTAAATGCTGAAAGAGAGATAAAATTATTG
AACCACTATTTATAATATTTAATATGGGAAATCTTAATAATATGCAAGAG
AGGCTTTGTCAAATGAGAGCAATCAGAGGGGATATGTAGCTGTAGCTGTG
GAGGCCcggaatcttcgagttagaaaactttgagttaggaattttcgagt
tag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067198-exon-scaffold_466-1491911889:296611..297821 | TCONS_00067198-exon-scaffold_466-1491911889:296611..297821 | Clytia hemisphaerica | exon |
| TCONS_00067198-exon-scaffold_466-1510915933:296611..297821 | TCONS_00067198-exon-scaffold_466-1510915933:296611..297821 | Clytia hemisphaerica | exon |
| TCONS_00067198-exon-scaffold_466-1575043694:296611..297821 | TCONS_00067198-exon-scaffold_466-1575043694:296611..297821 | Clytia hemisphaerica | exon |
| TCONS_00067198-exon-scaffold_466-1491911889:297852..297881 | TCONS_00067198-exon-scaffold_466-1491911889:297852..297881 | Clytia hemisphaerica | exon |
| TCONS_00067198-exon-scaffold_466-1510915933:297852..297881 | TCONS_00067198-exon-scaffold_466-1510915933:297852..297881 | Clytia hemisphaerica | exon |
| TCONS_00067198-exon-scaffold_466-1575043694:297852..297881 | TCONS_00067198-exon-scaffold_466-1575043694:297852..297881 | Clytia hemisphaerica | exon |
| TCONS_00067198-exon-scaffold_466-1491911889:297972..299213 | TCONS_00067198-exon-scaffold_466-1491911889:297972..299213 | Clytia hemisphaerica | exon |
| TCONS_00067198-exon-scaffold_466-1510915933:297972..299213 | TCONS_00067198-exon-scaffold_466-1510915933:297972..299213 | Clytia hemisphaerica | exon |
| TCONS_00067198-exon-scaffold_466-1575043694:297972..299213 | TCONS_00067198-exon-scaffold_466-1575043694:297972..299213 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:296611..299213 + |
Blast
The following BLAST results are available for this feature:
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