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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067199 ID=TCONS_00067199|Name=TCONS_00067199|organism=Clytia hemisphaerica|type=transcript|length=2509bp
AAATTAGGATATAAAATGCGTCtacaaatgaaaacattttctagCAATAT
AAGCATAACATAATGTAAAGGATTAAGAAATATTATTATCACTACTAGTT
TCAGAATTTATTtctaaaatgatttttaaaatgacATCACTCTTTTAACA
ATTTTTGTAATATTTAAGATATAGGTTAAAACAAAAACGAGAAATTACGA
TTGCAACATAGATCAGTTTCCTTGCACCAGACTTCAGTTACCTTAAGGTT
TCCTTCAAATTTTCAcattaaaagaaaattcattctaatttaaaacgaaa
aaaaaaaaactaacaaaatccAAATTATCATACACTTCTCCATTAAAAAA
TACTTGTTTTTATATTCCGGCTTTGAAAATACTTCATAATTTTTAATTAC
TAATTGTTCCAGGCATTGATAAAGCAAGTTGCTTGATTATAATTTATCCC
AGTTCACAGGTCAATAAAtcttttccaaaaaacatttaccaggaaataaa
aaattgttcGGTAAAAATCGATGCATTTTATTCACTCCTTTCTTATCAAC
AAAAGCTTTATTAATAGCAAGGTAATCCTTTCAAAACAacaatgcattgt
gggattgtttcgggggtattacaatagaaatctcttaggaattctactgt
aatacccccgaaataATCCCATAATGAATCGCTGTTTTAGAAAGATCAAA
TACTCTGATAAGGTCTATTAGCAAATACCCAGGAGTTTGTACTGTATGTT
GTATGATGGTGAACAGGAAAAAGAATAGCTACAATTATCAACAAGCATTT
TAGCACAGCATTTCTAAAAATTCATATAATGACCAAAGTTCTGAAAAGAG
CCACAGCATAGATGAAAATGAGATACTGACCAGAAGGAACTGGGAGGAAT
CTTTTTTTGTATTCAAACTCTAAAACCTTTGTTTACGTGAGCAATTGTAA
TTCATCATCATCTCCTTGTTCCTCGTCCATTTCATAACGCAATGGATCAT
TCAATGCAATGTCATTATAATATGCAGGTTGACTGCTGAGTCTTCTCTTC
TTTTTAAGATACAAACCAACTAGGAATACTGTTAAAATAATAAGAACAGC
TAAGATGATTAATGCAACTTTAGCTGGACTAGCTGATGGTTTCTTGTCCG
ATGTTTTGCCATCTCCTGTTCCTTTCCCAGATGTTGTTTTAACGGGTGTT
GTATCAGGTGCTTTGGTAGTTGCTGCTGTTGTATCAGGTGCTTTAGTAGT
TGCTGCTGTTGTATCAGGTGCTTTGGTAGTTGCTGCTGTTGTAGCAGGTG
CTTTGGTAGTTGCTTTTGTGGTTGAAGGTTTGGCGGTTGTTATTGTTTCA
GATGGTGTACAGCCGTGATTTGGGAAACTCACAGTGATGTTTTGAGTAGC
ATCTGCTTTGTATTTACCAGAAATCTTTGCGGAAATAGTATTCAGAAGAA
TAATGTTTTCCTTTGTGATTTTGGTGAAGTAGCTTTTTGTATTGAGATTT
AGGAGAACATTTTCAGCTATTTCATGCTTGAGCTCTATATCAGGATCAAA
CTTGTTTACAAGGAACTTTGTTTGGCTTATTGATATTGATTCTGTATGAT
GGATGGACAAAGTTAAATTGTATTCTGGTAGCTTATTTGGACAGGACATG
GAACCGTTGAATGAGAAATGCATAAGATAAGGTTTTTCAATTGTTCCAAC
ACAATACGGTAATAAGCAATCTTCAGTTAAACCCCAACAAAATGTCTTCT
CAGATTTAATAAGTGAGAAGCGTGTTgtcatttcattttcaagagCATTA
ATACCTTTACAATTACACACCATCGCTAACATTTCTGGCTTCAATGAAAA
CTTTTCTGCAATTGAAACCTTTGAGTTATTAATTAAATCAAGGTTGAAAt
tcattgataaatttttcattccgtTGCCTTCATTTGTAAACAGGACATCA
ACTGATAGCTTGATTTGATTATCATCAACAATTGTACTTAACTGTTGTTT
GGTATTCacattaaactttttgttcgCTGTGGCACTAGCTCCCTCATAAT
GAATCTCAAAAACCTCCTTACTGTCTTTACAATGCCAAAACCCAGCCATG
GAGAAAAACTTCTTGTCAGGTTCATCTTTATGAAAAACATTGCAAATGAA
CGATGAGCATTTCAAGCCATCAGGGTTGCACTTCATAGTCAAGTTTTTCA
CTTGGTTTGTCATATCGTTGAGTGCTTTTTGAAGACCACAAGACAGACAT
AATGAGCACAATGAGAGGCTTAGAAATATCACATTTAATAATTTCAATGT
TGCCATCTTAGCACATTTAATTAATAGTAAATGCTGAAAGAGAGATAAAA
TTATTGAACCACTATTTATAATATTTAATATGGGAAATCTTAATAATATG
CAAGAGAGGCTTTGTCAAATGAGAGCAATCAGAGGGGATATGTAGCTGTA
GCTGTGGAGGCCcggaatcttcgagttagaaaactttgagttaggaattt
tcgagttag Run BLAST on NCBI transcript from alignment at scaffold_466:296615..299213+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067199 ID=TCONS_00067199|Name=TCONS_00067199|organism=Clytia hemisphaerica|type=transcript|length=2599bp|location=Sequence derived from alignment at scaffold_466:296615..299213+ (Clytia hemisphaerica)
AAATTAGGATATAAAATGCGTCtacaaatgaaaacattttctagCAATAT
AAGCATAACATAATGTAAAGGATTAAGAAATATTATTATCACTACTAGTT
TCAGAATTTATTtctaaaatgatttttaaaatgacATCACTCTTTTAACA
ATTTTTGTAATATTTAAGATATAGGTTAAAACAAAAACGAGAAATTACGA
TTGCAACATAGATCAGTTTCCTTGCACCAGACTTCAGTTACCTTAAGGTT
TCCTTCAAATTTTCAcattaaaagaaaattcattctaatttaaaacgaaa
aaaaaaaaactaacaaaatccAAATTATCATACACTTCTCCATTAAAAAA
TACTTGTTTTTATATTCCGGCTTTGAAAATACTTCATAATTTTTAATTAC
TAATTGTTCCAGGCATTGATAAAGCAAGTTGCTTGATTATAATTTATCCC
AGTTCACAGGTCAATAAAtcttttccaaaaaacatttaccaggaaataaa
aaattgttcGGTAAAAATCGATGCATTTTATTCACTCCTTTCTTATCAAC
AAAAGCTTTATTAATAGCAAGGTAATCCTTTCAAAACAacaatgcattgt
gggattgtttcgggggtattacaatagaaatctcttaggaattctactgt
aatacccccgaaataATCCCATAATGAATCGCTGTTTTAGAAAGATCAAA
TACTCTGATAAGGTCTATTAGCAAATACCCAGGAGTTTGTACTGTATGTT
GTATGATGGTGAACAGGAAAAAGAATAGCTACAATTATCAACAAGCATTT
TAGCACAGCATTTCTAAAAATTCATATAATGACCAAAGTTCTGAAAAGAG
CCACAGCATAGATGAAAATGAGATACTGACCAGAAGGAACTGGGAGGAAT
CTTTTTTTGTATTCAAACTCTAAAACCTTTGTTTACGTGAGCAATTGTAA
TTCATCATCATCTCCTTGTTCCTCGTCCATTTCATAACGCAATGGATCAT
TCAATGCAATGTCATTATAATATGCAGGTTGACTGCTGAGTCTTCTCTTC
TTTTTAAGATACAAACCAACTAGGAATACTGTTAAAATAATAAGAACAGC
TAAGATGATTAATGCAACTTTAGCTGGACTAGCTGATGGTTTCTTGTCCG
ATGTTTTGCCATCTCCTGTTCCTTTCCCAGATGTTGTTTTAACGGGTGTT
GTATCAGGTGCTTTGGTAGTTGATGCTGTTGTACCAGGTGCTTTGGTAGT
TGCTGCTGTTGTATCAGGTGCTTTAGTAGTTGCTGCTGTTGTATCAGGTG
CTTCGGTAGTTGCTGCTGTTGTATCAGGTGCTTTAGTAGTTGCTGCTGTT
GTAGCAGGTGCTTTGGTAGTTGCTGCTGTTGTAGCAGGTGCTTTGGTAGT
TGCTTTTGTGGTTGAAGGTTTGGCGGTTGTTATTGTTTCAGATGGTGTAC
AGCCGTGATTTGGGAAACTCACAGTGATGTTTTGAGTAGCATCTGCTTTG
TATTTACCAGAAATCTTTGCGGAAATAGTATTCAGAAGAATAATGTTTTC
CTTTGTGATTTTGGTGAAGTAGCTTTTTGTATTGAGATTTAGGAGAACAT
TTTCAGCTATTTCATGCTTGAGCTCTATATCAGGATCAAACTTGTTTACA
AGGAACTTTGTTTGGCTTATTGATATTGATTCTGTATGATGGATGGACAA
AGTTAAATTGTATTCTGGTAGCTTATTTGGACAGGACATGGAACCGTTGA
ATGAGAAATGCATAAGATAAGGTTTTTCAATTGTTCCAACACAATACGGT
AATAAGCAATCTTCAGTTAAACCCCAACAAAATGTCTTCTCAGATTTAAT
AAGTGAGAAGCGTGTTgtcatttcattttcaagagCATTAATACCTTTAC
AATTACACACCATCGCTAACATTTCTGGCTTCAATGAAAACTTTTCTGCA
ATTGAAACCTTTGAGTTATTAATTAAATCAAGGTTGAAAttcattgataa
atttttcattccgtTGCCTTCATTTGTAAACAGGACATCAACTGATAGCT
TGATTTGATTATCATCAACAATTGTACTTAACTGTTGTTTGGTATTCaca
ttaaactttttgttcgCTGTGGCACTAGCTCCCTCATAATGAATCTCAAA
AACCTCCTTACTGTCTTTACAATGCCAAAACCCAGCCATGGAGAAAAACT
TCTTGTCAGGTTCATCTTTATGAAAAACATTGCAAATGAACGATGAGCAT
TTCAAGCCATCAGGGTTGCACTTCATAGTCAAGTTTTTCACTTGGTTTGT
CATATCGTTGAGTGCTTTTTGAAGACCACAAGACAGACATAATGAGCACA
ATGAGAGGCTTAGAAATATCACATTTAATAATTTCAATGTTGCCATCTTA
GCACATTTAATTAATAGTAAATGCTGAAAGAGAGATAAAATTATTGAACC
ACTATTTATAATATTTAATATGGGAAATCTTAATAATATGCAAGAGAGGC
TTTGTCAAATGAGAGCAATCAGAGGGGATATGTAGCTGTAGCTGTGGAGG
CCcggaatcttcgagttagaaaactttgagttaggaattttcgagttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067199-exon-scaffold_466-1491911889:296615..297821 | TCONS_00067199-exon-scaffold_466-1491911889:296615..297821 | Clytia hemisphaerica | exon |
| TCONS_00067199-exon-scaffold_466-1510915933:296615..297821 | TCONS_00067199-exon-scaffold_466-1510915933:296615..297821 | Clytia hemisphaerica | exon |
| TCONS_00067199-exon-scaffold_466-1575043694:296615..297821 | TCONS_00067199-exon-scaffold_466-1575043694:296615..297821 | Clytia hemisphaerica | exon |
| TCONS_00067199-exon-scaffold_466-1491911889:297852..297911 | TCONS_00067199-exon-scaffold_466-1491911889:297852..297911 | Clytia hemisphaerica | exon |
| TCONS_00067199-exon-scaffold_466-1510915933:297852..297911 | TCONS_00067199-exon-scaffold_466-1510915933:297852..297911 | Clytia hemisphaerica | exon |
| TCONS_00067199-exon-scaffold_466-1575043694:297852..297911 | TCONS_00067199-exon-scaffold_466-1575043694:297852..297911 | Clytia hemisphaerica | exon |
| TCONS_00067199-exon-scaffold_466-1491911889:297972..299213 | TCONS_00067199-exon-scaffold_466-1491911889:297972..299213 | Clytia hemisphaerica | exon |
| TCONS_00067199-exon-scaffold_466-1510915933:297972..299213 | TCONS_00067199-exon-scaffold_466-1510915933:297972..299213 | Clytia hemisphaerica | exon |
| TCONS_00067199-exon-scaffold_466-1575043694:297972..299213 | TCONS_00067199-exon-scaffold_466-1575043694:297972..299213 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:296615..299213 + |
Blast
The following BLAST results are available for this feature:
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