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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067589 ID=TCONS_00067589|Name=TCONS_00067589|organism=Clytia hemisphaerica|type=transcript|length=4346bpRun BLAST on NCBI protein sequence of TCONS_00067589-protein >TCONS_00067589-protein ID=TCONS_00067589-protein|Name=TCONS_00067589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1310bp MSNECDTNIRSDDLINYNNNRSDEQTEAVTPVCIEDHIQPIEEANQNDGKRun BLAST on NCBI transcript from alignment at scaffold_471:20655..63852- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067589 ID=TCONS_00067589|Name=TCONS_00067589|organism=Clytia hemisphaerica|type=transcript|length=43198bp|location=Sequence derived from alignment at scaffold_471:20655..63852- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_471:20655..63852- >TCONS_00067589 ID=TCONS_00067589|Name=TCONS_00067589|organism=Clytia hemisphaerica|type=CDS|length=86526bp|location=Sequence derived from alignment at scaffold_471:20655..63852- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067589 vs. Swiss-Prot (Human)
Match: MDR1 (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3) HSP 1 Score: 1153.27 bits (2982), Expect = 0.000e+0 Identity = 605/1259 (48.05%), Postives = 834/1259 (66.24%), Query Frame = 1
Query: 352 PVVSVRQLFRYASTNDWIFMFLASISACINGMLQPISFILFGELIDDFVE-----------------QDAGKTIDLNKEMEKFGIYYVYIGLGAIVFGYFQNMLWLRASINQAFKIRTLAFESILRQDIGFFDTNDAGELTSRLADGVTKIQSGIGDKIGSLQHAIAMLIGGTIIGFIYGWKLTLVIIAMSPLLFIGAFATGKVIGTITSQEQTSYAKAGSIAEEVLSSIRTVVAFGSEKKETDRYCVHLKDAERAGIRKGLSTGFAFALFNLTTFGCMALGFWYGGTLISESEMTAGNLLIVFFSILMGASQFGQVSPNMEVFSSARGAAYPIYQLIERQPEIDSLSESGEMI-KIEGDIRFQDCHFAYPSRPNVQVLRGFNLRIKPGTTCALVGESGCGKSTTVKLIQRFYDVARGDVQIDSVGIKSINVKHLRRHIGVVSQEPVLFDASIKKNILMGHPEASEEMVIQAAKNANAHGFITELPQGYDTNVGEGGAQLSGGQKQRIAIARALVRDPKILLLDEATSALDTGSEAIVQGALDKASFGRTTIIIAHRLSTVKNADQIAVVSNGQVCELGSHKELIDKRGEYFKMVTLQNLAAQKEDSNEPSSVLGDFTDIDEELLKESAFHEKSKHDTLQ----NVESTTSAKRQTSNKLQPQSSQTRQ-DEKETPDESVKTPPLGRILKLNANEWPYILLGVFFSAIAGAMPVVAAIIMAEILQSFAEVDANEMKKK-MEFWSIMFMVLGLVIAIAFFIAQYLFSKAGEALTTRLREMAFTALLRQEIGFFDLPQHNTGXXXXXXXXXXXXVQGATSTRLNTLTQVVVSGLSSLIVAFAYSWQLTLLVLAFVPFIAMFGGIQTSLNTSFAGNAQETLSQAGAISTEAIMQIRTVASLGKEDYFIEKYKSLLSGPTQGSLKSAHIYGLAYGFSTGVMMFSDGACFRLGGYLAEKDGLPLSAIMKVIIGIQFGAMTAGQTASYAPDYVKAKTAAGRILALFDREPVIDSYSSEG-MKNVIKGDITFKDVEFAYPTRENVEVLQKLNLTIPCGRTVAFVGASGCGKSTSVSLLERFYDVTGGKVLIDDILIKDYNIRSLRSQIGIVQQEPVLFDRSIRDNILYGIEDTSQITKETIETACTNSNIHHVIMGLPNGYETHVGDKGTLISGGQKQRIAIARALIRNPKILLLDEATSALDSESEKVVQEALDRAMEGRTSIVIAHRLSTIQNADVIAVIQNGKIMEIGSHFELMALKGAYYSL 4053
P VSV +FRY++ D ++M + +++A I+G P+ ++FGE+ D F D G ++L ++M ++ YY IG G +V Y Q W A+ Q KIR F +I+RQ+IG+FD +D GEL +RL D V+KI GIGDKIG ++A G I+GF GWKLTLVI+A+SP+L + A K++ + T +E +YAKAG++AEEVL++IRTV+AFG +KKE +RY +L++A+R GI+K ++ + L + AL FWYG TL+ E + G +L VFFS+L+GA GQ SP++E F++ARGAAY I+++I+ +P IDS S+SG I+G++ F++ HF+YPSR V++L+G NL+++ G T ALVG SGCGKSTTV+L+QR YD G V +D I++INV+ LR IGVVSQEPVLF +I +NI G + + + +A K ANA+ FI +LP +DT VGE GAQLSGGQKQRIAIARALVR+PKILLLDEATSALDT SEA+VQ ALDKA GRTTI+IAHRLSTV+NAD IA +G + E G+H EL+ ++G YFK+VT+Q + E L+ +A KS+ D L+ + S+ KR T ++ +Q R+ KE DES+ RI+KLN EWPY ++GVF + I G + AII ++I+ F +D E K++ +S++F+ LG++ I FF+ + F KAGE LT RLR M F ++LRQ++ +FD P++ TGAL+ RL+ DAA V+GA +RL +TQ + + + +I++F Y WQLTLL+LA VP IA+ G ++ + + A ++ L +G I+TEAI RTV SL +E F Y L P + SL+ AHI+G+ + F+ +M FS CFR G YL + ++ V + FGAM GQ +S+APDY KAK +A I+ + ++ P+IDSYS+EG M N ++G++TF +V F YPTR ++ VLQ L+L + G+T+A VG+SGCGKST V LLERFYD GKVL+D IK N++ LR+ +GIV QEP+LFD SI +NI YG +++ +++E I A +NIH I LPN Y T VGDKGT +SGGQKQRIAIARAL+R P ILLLDEATSALD+ESEKVVQEALD+A EGRT IVIAHRLSTIQNAD+I V QNG++ E G+H +L+A KG Y+S+
Sbjct: 32 PTVSVFSMFRYSNWLDKLYMVVGTLAAIIHGAGLPLMMLVFGEMTDIFANAGNLEDLMSNITNRSDINDTGFFMNLEEDMTRYAYYYSGIGAGVLVAAYIQVSFWCLAAGRQIHKIRKQFFHAIMRQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQSMATFFTGFIVGFTRGWKLTLVILAISPVLGLSAAVWAKILSSFTDKELLAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNKNLEEAKRIGIKKAITANISIGAAFLLIYASYALAFWYGTTLVLSGEYSIGQVLTVFFSVLIGAFSVGQASPSIEAFANARGAAYEIFKIIDNKPSIDSYSKSGHKPDNIKGNLEFRNVHFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQTAGNEVE-------------------LENAADESKSEIDALEMSSNDSRSSLIRKRSTRRSVRGSQAQDRKLSTKEALDESIPPVSFWRIMKLNLTEWPYFVVGVFCAIINGGLQPAFAIIFSKIIGVFTRIDDPETKRQNSNLFSLLFLALGIISFITFFLQGFTFGKAGEILTKRLRYMVFRSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAIGSRLAVITQNIANLGTGIIISFIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTQEQKFEHMYAQSLQVPYRNSLRKAHIFGITFSFTQAMMYFSYAGCFRFGAYLVAHKLMSFEDVLLVFSAVVFGAMAVGQVSSFAPDYAKAKISAAHIIMIIEKTPLIDSYSTEGLMPNTLEGNVTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYG-DNSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSM 1270 HSP 2 Score: 443.736 bits (1140), Expect = 6.034e-132 Identity = 247/589 (41.94%), Postives = 359/589 (60.95%), Query Frame = 1
Query: 352 PVVSVRQLFRYASTNDWIFMFLASISACINGMLQPISFILFGELIDDFVEQDAGKTIDLNKEMEKFGIYYVYIGLGAIVFGYFQNMLWLRASINQAFKIRTLAFESILRQDIGFFD--TNDAGELTSRLADGVTKIQSGIGDKIGSLQHAIAMLIGGTIIGFIYGWKLTLVIIAMSPLLFIGAFATGKVIGTITSQEQTSYAKAGSIAEEVLSSIRTVVAFGSEKKETDRYCVHLKDAERAGIRK----GLSTGFAFALFNLTTFGCMALGFWYGGTLISESEMTAGNLLIVFFSILMGASQFGQVSPNMEVFSSARGAAYPIYQLIERQPEIDSLSESGEMIK-IEGDIRFQDCHFAYPSRPNVQVLRGFNLRIKPGTTCALVGESGCGKSTTVKLIQRFYDVARGDVQIDSVGIKSINVKHLRRHIGVVSQEPVLFDASIKKNILMGHPE--ASEEMVIQAAKNANAHGFITELPQGYDTNVGEGGAQLSGGQKQRIAIARALVRDPKILLLDEATSALDTGSEAIVQGALDKASFGRTTIIIAHRLSTVKNADQIAVVSNGQVCELGSHKELIDKRGEYFKMVTLQ 2091
P VS ++ + T +W + + A ING LQP I+F ++I F D +T N + F + ++ +G+ + + + Q + +A ++R + F S+LRQD+ +FD N G LT+RLA+ +++ IG ++ + IA L G II FIYGW+LTL+++A+ P++ I K++ +++ +G IA E + + RTVV+ E+K Y L+ R +RK G++ F A+ + GC F +G L++ M+ ++L+VF +++ GA GQVS ++ A+ +A I +IE+ P IDS S G M +EG++ F + F YP+RP++ VL+G +L +K G T ALVG SGCGKST V+L++RFYD G V +D IK +NV+ LR H+G+VSQEP+LFD SI +NI G S+E +++AAK AN H FI LP Y T VG+ G QLSGGQKQRIAIARALVR P ILLLDEATSALDT SE +VQ ALDKA GRT I+IAHRLST++NAD I V NG+V E G+H++L+ ++G YF MV++Q
Sbjct: 693 PPVSFWRIMKLNLT-EWPYFVVGVFCAIINGGLQPAFAIIFSKIIGVFTRIDDPETKRQNSNL--FSLLFLALGIISFITFFLQGFTFGKAGEILTKRLRYMVFRSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAIGSRLAVITQNIANLGTGIIISFIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTQEQKFEHMYAQSLQVPYRNSLRKAHIFGITFSFTQAMMYFSYAGC----FRFGAYLVAHKLMSFEDVLLVFSAVVFGAMAVGQVSSFAPDYAKAKISAAHIIMIIEKTPLIDSYSTEGLMPNTLEGNVTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1274 The following BLAST results are available for this feature:
BLAST of TCONS_00067589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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