TCONS_00067634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067634
Unique NameTCONS_00067634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067634 ID=TCONS_00067634|Name=TCONS_00067634|organism=Clytia hemisphaerica|type=transcript|length=1678bp
GGTatataaatgataaaaataaaatgagctTAATAAATACTGACaacaag
attagaaaaaatgagaaagatTCAACACGAGTAGATAACAGAATCATGGA
TGGTGAAAAGTATTTATTGAAGTATGACATCCATTTCTACTTAGGGGATG
CAGTCAAACAAATGTTGCGCTGTAAAACATCCAACATTAAAATCACATCT
ACTAATGTTTTACATGAGTATTttgttaatgtcaaaaaaggAAATCATGT
ATTGTTGCGTGAATATGATTACATCCAAGCAACCAATTGGAATCGTTTAT
CATttattagaaaattttggaaatcttttgaACATCTTTCATCAAATGGT
GGATTGTATTCTGGCAATGATTTTCAATCATTTCTATGTTTATTATGTCC
AGATTTTTCAGAGGATATTGTACAAAAGGCAATGGAAATTGCTTCTCAGA
ATGAAAATTGTCTAGAAACCAATTTAGTCATTTCTTTTTCAGACTTTACA
TACAACATGCAGTTCATATTTTACTATATGGAATTCTCAAAACATTGTGA
agatatttttaagaatttgatACACCATGAATCATCTCTGGATCCAAATT
CACCAAGAAGCAACATACCAtccaaatcatttttaagacaTGTTAgagaa
cagatattttacaagAATGAGATTTTAACACCACCTGCAGACATTGTTGA
AGATTTACTTAGAAGTTCTTCACACATTGATTATTATCAATTTATAACTA
TGCTGAGCCAAAACACAAGGATCGTTTTGTTGTACAATCAATGATTTTTG
TCGAGTCAGCatattttacaatattttgGCTGAGTTATCAAAACTATCTT
GTGACTTAGCTAATCGAAACTATTTTCAACTAGTTTCTTCCCGTCGGGGG
AGGGTACTTAGGCTAGTGAAGGTACAGGTATGTCCGACCCTTTTTTGGAA
CCTGGCAGTCCCTGTTGGGAAAGTTAGAAAATTCAACCTCTGTCCCACTT
TTGcactaagggtcagaaaaataggaaaatttcaattatttgaccccaaa
atcatcaaaatttggtcaaattagtccctaTAAAGGTCGTAAAAATTCAC
ACACTGGTACCCCTATCATTCTGTAAACCCAGTATCCCCTACTGGGAGTA
CGTTTCAAGGcccattttttgaaatgttgGTTTGAAAGTGTAAACGTTAC
TGTGCGTAATGACATCACCAAGGAATGTGACAGATTTTGTGTCATTCTGG
ACCATTTTAGGGGTCTAGgtaattgaccaaatttcataaaagacCCAATT
TTTGCCATGTGCTTTTCATGATCTTTTAGATATTCTgttatttattttcg
aaaactttttaaaaaaatcttattttcaggtatttttACTGAAAATCGAC
AAAATAAAATCCCCTAAAAAGGATCCAAAACTCTTCCATTCGATTGCAGT
TTTTCTTGGCGGTTCTAGGACCCATTACGAGCCTCTCTGCCAAATTTTAG
CCAAGTATTTATATTGAGTTCTGGTATTATTTTTTCCAAGGTAAAAGGTA
ATTCTAGTGGACTCTattggatttgtttatttgcttTAAAGACACTGTAT
ACTATTTCtgtaaatatttattgtaaaaAATAGCTCAGACATTTAAATAT
TGCAATATATACATTGAGTAGTTTATTT
Run BLAST on NCBI

protein sequence of TCONS_00067634-protein

>TCONS_00067634-protein ID=TCONS_00067634-protein|Name=TCONS_00067634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
YINDKNKMSLINTDNKIRKNEKDSTRVDNRIMDGEKYLLKYDIHFYLGDA
VKQMLRCKTSNIKITSTNVLHEYFVNVKKGNHVLLREYDYIQATNWNRLS
FIRKFWKSFEHLSSNGGLYSGNDFQSFLCLLCPDFSEDIVQKAMEIASQN
ENCLETNLVISFSDFTYNMQFIFYYMEFSKHCEDIFKNLIHHESSLDPNS
PRSNIPSKSFLRHVREQIFYKNEILTPPADIVEDLLRSSSHIDYYQFITM
LSQNTRIVLLYNQ
Run BLAST on NCBI

transcript from alignment at scaffold_472:91668..93401+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067634 ID=TCONS_00067634|Name=TCONS_00067634|organism=Clytia hemisphaerica|type=transcript|length=1734bp|location=Sequence derived from alignment at scaffold_472:91668..93401+ (Clytia hemisphaerica)
GGTatataaatgataaaaataaaatgagctTAATAAATACTGACaacaag
attagaaaaaatgagaaagatTCAACACGAGTAGATAACAGAATCATGGA
TGGTGAAAAGTATTTATTGAAGTATGACATCCATTTCTACTTAGGGGATG
CAGTCAAACAAATGTTGCGCTGTAAAACATCCAACATTAAAATCACATCT
ACTAATGTTTTACATGAGTATTttgttaatgtcaaaaaaggAAATCATGT
ATTGTTGCGTGAATATGATTACATCCAAGCAACCAATTGGAATCGTTTAT
CATttattagaaaattttggaaatcttttgaACATCTTTCATCAAATGGT
GGATTGTATTCTGGCAATGATTTTCAATCATTTCTATGTTTATTATGTCC
AGATTTTTCAGAGGATATTGTACAAAAGGCAATGGAAATTGCTTCTCAGA
ATGAAAATTGTCTAGAAACCAATTTAGTCATTTCTTTTTCAGACTTTACA
TACAACATGCAGTTCATATTTTACTATATGGAATTCTCAAAACATTGTGA
agatatttttaagaatttgatACACCATGAATCATCTCTGGATCCAAATT
CACCAAGAAGCAACATACCAtccaaatcatttttaagacaTGTTAgagaa
cagatattttacaagAATGAGATTTTAACACCACCTGCAGACATTGTTGA
AGATTTACTTAGAAGTTCTTCACACATTGATTATTATCAATTTATAACTA
TGCTGAGCCAAAACACAAGGATCGTTTTGTTGTACAATCAATGATTTTTG
TCGAGTCAGCatattttacaatattttgGCTGAGTTATCAAAACTATCTT
GTGACTTAGCTAATCGAAACTATTTTCAACTAGTTTCTTCCCGTCGGGGG
AGGGTACTTAGGCTAGTGAAGGTACAGGTATGTCCGACCCTTTTTTGGAA
CCTGGCAGTCCCTGTTGGGAAAGTTAGAAAATTCAACCTCTGTCCCACTT
TTGcactaagggtcagaaaaataggaaaatttcaattatttgaccccaaa
atcatcaaaatttggtcaaattagtccctaTAAAGGTCGTAAAAATTCAC
ACACTGGTACCCCTATCATTCTGTAAACCCAGTATCCCCTACTGGGAGTA
CGTTTCAAGGcccattttttgaaatgttgGTTTGAAAGTGTAAACGTTAC
TGTGCGTAATGACATCACCAAGGAATGTGACAGATTTTGTGTCATTCTGG
ACCATTTTAGGGGTCTAGgtaattgaccaaatttcataaaagacCCAATT
TTTGCCATGTGCTTTTCATGATCTTTTAGATATTCTgttatttattttcg
aaaactttttaaaaaaatcttattttcaggtatttttACTGAAAATCGAC
AAAATAAAATCCCCTAAAAAGGATCCAAAACTCTTCCATTCGATTGCAGT
TTTTCTTGGCGGTTCTAGGACCCATTACGAGCCTCTCTGCCAAATTTTAG
CCAAGTATTTATATTGAGTTCTGGTATTATTTTTTCCAAGGTAAAAGGCN
tgccaaatttcagccaagtATTTATATTGAGTTCTGGTATTATTTTTTCC
AAGGTAATTCTAGTGGACTCTattggatttgtttatttgcttTAAAGACA
CTGTATACTATTTCtgtaaatatttattgtaaaaAATAGCTCAGACATTT
AAATATTGCAATATATACATTGAGTAGTTTATTT

Coding sequence (CDS) from alignment at scaffold_472:91668..93401+

>TCONS_00067634 ID=TCONS_00067634|Name=TCONS_00067634|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_472:91668..93401+ (Clytia hemisphaerica)
TatataaatgataaaaataaaatgagctTAATAAATACTGACaacaagat
tagaaaaaatgagaaagatTCAACACGAGTAGATAACAGAATCATGGATG
GTGAAAAGTATTTATTGAAGTATGACATCCATTTCTACTTAGGGGATGCA
GTCAAACAAATGTTGCGCTGTAAAACATCCAACATTAAAATCACATCTAC
TAATGTTTTACATGAGTATTttgttaatgtcaaaaaaggAAATCATGTAT
TGTTGCGTGAATATGATTACATCCAAGCAACCAATTGGAATCGTTTATCA
TttattagaaaattttggaaatcttttgaACATCTTTCATCAAATGGTGG
ATTGTATTCTGGCAATGATTTTCAATCATTTCTATGTTTATTATGTCCAG
ATTTTTCAGAGGATATTGTACAAAAGGCAATGGAAATTGCTTCTCAGAAT
GAAAATTGTCTAGAAACCAATTTAGTCATTTCTTTTTCAGACTTTACATA
CAACATGCAGTTCATATTTTACTATATGGAATTCTCAAAACATTGTGAag
atatttttaagaatttgatACACCATGAATCATCTCTGGATCCAAATTCA
CCAAGAAGCAACATACCAtccaaatcatttttaagacaTGTTAgagaaca
gatattttacaagAATGAGATTTTAACACCACCTGCAGACATTGTTGAAG
ATTTACTTAGAAGTTCTTCACACATTGATTATTATCAATTTATAACTATG
CTGAGCCAAAACACAAGGATCGTTTTGTTGTACAATCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042241XLOC_042241Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067634-proteinTCONS_00067634-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067634-exon-scaffold_472-1491911889:91668..93214TCONS_00067634-exon-scaffold_472-1491911889:91668..93214Clytia hemisphaericaexon
TCONS_00067634-exon-scaffold_472-1510915933:91668..93214TCONS_00067634-exon-scaffold_472-1510915933:91668..93214Clytia hemisphaericaexon
TCONS_00067634-exon-scaffold_472-1575043694:91668..93214TCONS_00067634-exon-scaffold_472-1575043694:91668..93214Clytia hemisphaericaexon
TCONS_00067634-exon-scaffold_472-1491911889:93271..93401TCONS_00067634-exon-scaffold_472-1491911889:93271..93401Clytia hemisphaericaexon
TCONS_00067634-exon-scaffold_472-1510915933:93271..93401TCONS_00067634-exon-scaffold_472-1510915933:93271..93401Clytia hemisphaericaexon
TCONS_00067634-exon-scaffold_472-1575043694:93271..93401TCONS_00067634-exon-scaffold_472-1575043694:93271..93401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:91668..93401 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.06491	1.55436	0.970745	1.17712	0	0.836433	0	9.73693e-06	0.630898	0.768864	1.85958	1.35109	1.36527	1.13428	0.459409	0.456224	0.426056	0.408819	0.847209	0.483569	0.537062	0.683374	5.12284	4.456	0	0	1.55644	1.28998	2.53314	3.16805
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
Blast
[Close]
BLAST of TCONS_00067634 vs. Swiss-Prot (Human)
Match: CK049 (UPF0705 protein C11orf49 OS=Homo sapiens GN=C11orf49 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.852e-30
Identity = 72/242 (29.75%), Postives = 120/242 (49.59%), Query Frame = 3 
Query:  108 KYLLKYDIHFYLGDAVKQMLRCKTSNIKITSTNVLHEYFVNVKKGNHVLLREYDYIQATNWNRLSFIRKFWKSFEHLSSNGGLYSGNDFQSFLCLLCPDFSEDIVQKAMEIASQNENCLETNLVISFSDFTYNMQFIFYYMEFSKHCEDIFKNLIHHESSLDPNS------------PRSNIPSKSFLRHVREQIFY--------KNEILTPPADIVEDLLRSSSHIDYYQFITMLSQNTRI 773
            +YL +  +  Y+ DAV Q+L  +    +        EYF +V +G H+L RE+ ++QAT  NR+SF+R FW+ F  +  NG L +  ++   L LLCPDF  ++ QKA  I   ++     + ++SFSDF +  Q  FYY EF      I+++L+   S  +PN+             R  +     L  V   +FY        +++   PP  +V++ L +   + +Y F+  LS++  I
Sbjct:   13 EYLAQRHVLTYMEDAVCQLLENREDISQYGIARFFTEYFNSVCQGTHILFREFSFVQATPHNRVSFLRAFWRCFRTVGKNGDLLTMKEYHCLLQLLCPDFPLELTQKAARIVLMDD---AMDCLMSFSDFLFAFQIQFYYSEFLDSVAAIYEDLL---SGKNPNTVIVPTSSSGQHRQRPALGGAGTLEGVEASLFYQCLENLCDRHKYSCPPPALVKEALSNVQRLTFYGFLMALSKHRGI 248
The following BLAST results are available for this feature:
BLAST of TCONS_00067634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CK0497.852e-3029.75UPF0705 protein C11orf49 OS=Homo sapiens GN=C11orf... [more]
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