TCONS_00067643 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067643
Unique NameTCONS_00067643
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067643 ID=TCONS_00067643|Name=TCONS_00067643|organism=Clytia hemisphaerica|type=transcript|length=1746bp
gtgtacatcaATGAAAGGAAAGAGAAATCTATTATATCATGAAAACGAAG
AGAAAATTTAAATAAGAGATAATATGATGTTATGTAGAGAGAACTTATAT
TATGGTTCGAATGAGttggtttgatttgaaatgattgcttatcaaaagtt
acagagaGCACAACAATCATACGACAAACTAAAGGGATTCAACAAACTAA
AGGGGTTCAATCGGGGATTCAACAAACTAAAGGGGTTCAATTTCAAAAGA
CATTAATTTACTAGGAAACCTCGCAACCAACATGGCCTTTGGTAAAGTGA
AGGTGTCCGTTTATCATGGTTTTCATTTTAATCAAGAgccattttttaac
tcaaataaatttgaattgaatgacaaaatatcATTTGTAATGAGAAAGAT
TGCAGATTTTCTTGTACATGTACCAGTTGATCTGATGCTTATGTTTCAAG
GAAACAATACTGAAACACCGCTTCGTGGTGATACGAACATTTCAGAACTT
ACTTTTGGTTTAAATGAAATCAAACTTTATTTTGGATTGAAAAGATGCAG
ACAATCTCTACAGCTTCTCGAACGGAAACAGACAAAAGACTTGAAAATGT
TATGGAGATTAACCGTTAGAGGATTTGGAATATCTAATCAAATAATTACA
ACAACATATACTGATCGCAATATGGCTGAAATTTATGAACATATCGGGTC
CATTACAGGATTGCCAGCTGATCATTTGATAATGTTCTCTAAAGATAAAG
AAGTTTTCCCATACACTAGAGAGTCCGTTTTCGATGGACAAAAAGATTTT
CGTGAAAGTATGATCATGTTTGTTGTTGCTTATTTTCAAGAAAACGAAAA
GATGGACGATATATGTATTCAATATGGAATCAAACATCTGAAATCACTCA
AGTTGAAATTCTTAACAAAAGAAGAAGAGTTGAATCCAAGAGAAATGGAA
TCTATCCAAGACATTAAAAATTATGTTTATAAAACACATGATATTCCTCT
CCATCAACAAAGTATACTTTTCCAACATCAAGAGATTGAAAACGATTCGA
CCAAGATATTTGATCTTTTGATGCAAAAAGAACGTTTGGAAGGAGGAGTG
ATTTGTTTTAACGTTGTCATTAATAAGAAGCCGTTCGAAATCGAAACTGC
GGTCTACCATTTAGGATTTGGAAGTTCGATGATGACGGTCGTACATGTCT
CTTATTCAGACACAATTGCAGAggttaaaatgaaaattcttgaaaatcat
TACAGCTGGAAATTAGAAAATATCCAAAATCAACTTGACGATGAGAGTTC
TGCTGTTTCATCAACTGGTTGGGAGTCTccttcagatttttttcaatttg
gaaCTTATTCTaatatttatgaaaatttcaaaaccgTAGAAGAATGCGGA
ATATCGCCAAATGTAAAATACGAATTAAGAGAATTTGTCTTGATTAGAAT
TCGTCAAATTCGTTTAGATTCTACAGAGAAAAACATTGTGGAATATACAA
TTACCAAAGATTATTATCATCTCCAACTTGACGAAGTGTTGAAAGCTTTT
CGTAAGCAATACAAAGTACATCGTAAGGAGTTGCGTCTTTTACCTGGCCA
AGAGGGTGTTTCTAAAGATCAGTTCTCGAGAACAAGAATCGAAACCAATG
TTTTCGTTATTGATTACATGGTCATAAAAAGGCCACAGCGAAAATGTGTG
ATTATGTGAAATTTGTGAATTGCTAGTTAATAttatttaattcaaa
Run BLAST on NCBI

transcript from alignment at scaffold_472:117609..119354+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067643 ID=TCONS_00067643|Name=TCONS_00067643|organism=Clytia hemisphaerica|type=transcript|length=1746bp|location=Sequence derived from alignment at scaffold_472:117609..119354+ (Clytia hemisphaerica)
gtgtacatcaATGAAAGGAAAGAGAAATCTATTATATCATGAAAACGAAG
AGAAAATTTAAATAAGAGATAATATGATGTTATGTAGAGAGAACTTATAT
TATGGTTCGAATGAGttggtttgatttgaaatgattgcttatcaaaagtt
acagagaGCACAACAATCATACGACAAACTAAAGGGATTCAACAAACTAA
AGGGGTTCAATCGGGGATTCAACAAACTAAAGGGGTTCAATTTCAAAAGA
CATTAATTTACTAGGAAACCTCGCAACCAACATGGCCTTTGGTAAAGTGA
AGGTGTCCGTTTATCATGGTTTTCATTTTAATCAAGAgccattttttaac
tcaaataaatttgaattgaatgacaaaatatcATTTGTAATGAGAAAGAT
TGCAGATTTTCTTGTACATGTACCAGTTGATCTGATGCTTATGTTTCAAG
GAAACAATACTGAAACACCGCTTCGTGGTGATACGAACATTTCAGAACTT
ACTTTTGGTTTAAATGAAATCAAACTTTATTTTGGATTGAAAAGATGCAG
ACAATCTCTACAGCTTCTCGAACGGAAACAGACAAAAGACTTGAAAATGT
TATGGAGATTAACCGTTAGAGGATTTGGAATATCTAATCAAATAATTACA
ACAACATATACTGATCGCAATATGGCTGAAATTTATGAACATATCGGGTC
CATTACAGGATTGCCAGCTGATCATTTGATAATGTTCTCTAAAGATAAAG
AAGTTTTCCCATACACTAGAGAGTCCGTTTTCGATGGACAAAAAGATTTT
CGTGAAAGTATGATCATGTTTGTTGTTGCTTATTTTCAAGAAAACGAAAA
GATGGACGATATATGTATTCAATATGGAATCAAACATCTGAAATCACTCA
AGTTGAAATTCTTAACAAAAGAAGAAGAGTTGAATCCAAGAGAAATGGAA
TCTATCCAAGACATTAAAAATTATGTTTATAAAACACATGATATTCCTCT
CCATCAACAAAGTATACTTTTCCAACATCAAGAGATTGAAAACGATTCGA
CCAAGATATTTGATCTTTTGATGCAAAAAGAACGTTTGGAAGGAGGAGTG
ATTTGTTTTAACGTTGTCATTAATAAGAAGCCGTTCGAAATCGAAACTGC
GGTCTACCATTTAGGATTTGGAAGTTCGATGATGACGGTCGTACATGTCT
CTTATTCAGACACAATTGCAGAggttaaaatgaaaattcttgaaaatcat
TACAGCTGGAAATTAGAAAATATCCAAAATCAACTTGACGATGAGAGTTC
TGCTGTTTCATCAACTGGTTGGGAGTCTccttcagatttttttcaatttg
gaaCTTATTCTaatatttatgaaaatttcaaaaccgTAGAAGAATGCGGA
ATATCGCCAAATGTAAAATACGAATTAAGAGAATTTGTCTTGATTAGAAT
TCGTCAAATTCGTTTAGATTCTACAGAGAAAAACATTGTGGAATATACAA
TTACCAAAGATTATTATCATCTCCAACTTGACGAAGTGTTGAAAGCTTTT
CGTAAGCAATACAAAGTACATCGTAAGGAGTTGCGTCTTTTACCTGGCCA
AGAGGGTGTTTCTAAAGATCAGTTCTCGAGAACAAGAATCGAAACCAATG
TTTTCGTTATTGATTACATGGTCATAAAAAGGCCACAGCGAAAATGTGTG
ATTATGTGAAATTTGTGAATTGCTAGTTAATAttatttaattcaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042243XLOC_042243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067643-exon-scaffold_472-1491911889:117609..119354TCONS_00067643-exon-scaffold_472-1491911889:117609..119354Clytia hemisphaericaexon
TCONS_00067643-exon-scaffold_472-1510915933:117609..119354TCONS_00067643-exon-scaffold_472-1510915933:117609..119354Clytia hemisphaericaexon
TCONS_00067643-exon-scaffold_472-1575043694:117609..119354TCONS_00067643-exon-scaffold_472-1575043694:117609..119354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:117609..119354 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.879692	0.609418	0.634925	0.299139	2.88542	1.94913	1.93158	1.95983	0.898782	1.23337	0.955534	0.603764	2.41048	1.25912	0.632943	0.944944	1.31733	3.19474	0.791233	1.21791	0.865625	0.655523	1.77613	1.76275	0.641887	0.796027	4.97032	2.34138	1.99604	1.38612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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