TCONS_00067661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067661
Unique NameTCONS_00067661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1193

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067661 ID=TCONS_00067661|Name=TCONS_00067661|organism=Clytia hemisphaerica|type=transcript|length=1193bp
GATGTGTTGAAAACGaagttagaaaaattaaaaatgcgaAGATCACTGCA
AGCGGCGAGTGGTAAGAAGAACATGtcagaagaagatgaagaagaaaatg
aaataagACAAAACCTcgatcaacaaaaacaaaaGTACAAACAATCGTTC
AACCAATTGAAAGCTTTGAAGACAGAAATCGAACACATGCAATATCTGtt
agagaaatcgaaagtgaaactgcAGAATGATTTTGAAACGTGGTGGAACG
AGCAAACGATATCTCAAGACGAAATCATACAAAACCCACTCGATATTGGC
GTTCGTAAAGCGTGGCGTACACCTCCGCCCTTGACACCACTCGAATCAAC
ACCCTTTGCGCCCAATGACGAAACGAGGAAAGGAGAGAGACATTCTTTAa
ggaaaagtgaaaaatcaGGCAGTTCTTCACTAAGTAATAATGAACAATAC
AGACAAAGTCATTCATCCATAAATAACGATAATTGTAACCCAAATTACAA
CGGAAGCAAAGAAAGACTAGCACCTGGATATGACACTAAATATGACTCGA
ATCCATCCAGTAATATTAAAGAACATTCACGAAACTCAATACTATCAAGT
CAGCAAAATTCGAAGAATAATTCTCGAAATTCTGTACTCTCAAGTATACA
ACAAAAACATTCAATAACAGCAGCATCATCAACCAATCAAATGCAATCAC
GTGATTCAAGTGTGTCTGGTAATGGAGAACGTCCGAAATCGTCAGGTTTA
CGTTTGACAGGTGATCCGGACACTGATGACGATATAATGGCTTTCATGAA
AGCACGTCAAGAAATATTAAAGAGAAGTCAAAGGTGATAGAGGGCATTCA
TAATTGAGCAATCGAGCACAAATGGATCCAAGAGACAGCAAACATGACAC
GAAGAAATATTTGTCATTACATTAAAAGATGATGACGTAGAATCGATTAA
TATTTCCGATTCAAATCATCAAGTATATTTCCTTGTTGGCTGAAATCTCA
CTTGAATGGTGCCATAATGCATTagtattatttttattgaatgaTAACCA
ACCTGCTATTACAATCCCTAGCTGAGCACTTTTAACGTCATAATAACGCC
GTTCTAACGTTCATAAAGTCACAAGGTCCATTTAACGTCCATTCATTTGA
GCATTTGaggtagttttgccaaaaattcgagaaaaaatgGGAG
Run BLAST on NCBI

transcript from alignment at scaffold_472:299915..306545+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067661 ID=TCONS_00067661|Name=TCONS_00067661|organism=Clytia hemisphaerica|type=transcript|length=6631bp|location=Sequence derived from alignment at scaffold_472:299915..306545+ (Clytia hemisphaerica)
GATGTGTTGAAAACGaagttagaaaaattaaaaatgcgaAGATCACTGCA
AGGTAAAATTAtcgttttttcaattttcttccgAACATTCCTTTGAAATT
CCCGATTTCCGTCTAAAATTCCGgaaatttagaatatttttcccaAATTC
CGAAACTCCGGCCGTTTTTGTGCCAAATTCCTTTTTTTCCGGGCTGAGAC
AGACCAATTTTCCGTTTTCGACATAGGACTTAATTTTCGAAATTCCGTCC
AAATTTTCgtcaaattccgccactccgccCGAAAAAAAAGCatgattccg
ctcctccgccaaccgtgAACCCCCTCTTTTACATACAGTTAACATCTATT
AACCCTTAAATATATTCAGAACGCTATGGTTGATTTGAGTTGTAAAAGTA
GCAGTATTAGTACTCGGTGTTTTGAAGATGTGTTCAATTAGAATCGATGT
TACAACAGCTTTTAGaagatatttttatattttcttaattcAAAGACTGA
GTATTTTAACTTTGTAAAATTTGTCgataaagaatatttttcccctgttt
gtttgtaattttgacACCGAGCTTGTTTTCAACTTGATTTTTTGGTCCTA
GGTGAAACTAGTATAAAATTTAATCTCACTTTTTTTCCGTTTCAGCGGCG
AGTGGTAAGAAGAACATGtcagaagaagatgaagaagaaaatgaaataag
ACAAAACCTcgatcaacaaaaacaaaagtatttTGATTATCAAATGTTCT
TTGTATNATGTCGCTTGGTAGGCAAGAGGCTTTCGAACTTTTCAAAAGAG
ATTATGCAGAAAATGGGCTAAtcgaagaaaacaaaaagggaTTAAAATCA
AGGTATGATTATTGATTACTGTTATTTAttgcttttgattttttgaatgt
tATTTATTATTGTGAGTAAGCATGTACGAAGAATTTATTACTATGtgctg
gatttacgaaaatgaTTAGAAATTGCGTGATTGCTGCTTTGGCGAGAGGT
TGAAGGATTCGTTtgattaaaggaagaaattttggcggaagaaaatttaa
ttctcgccaaatttaaattatatAAGTACCGCCAAATTTCGTCCTATTTC
AATCTCCAAAATTGGGTTTTCAACGAATTTGCTATCATTTTTGACCctaa
atatcctgcaaccgccaaattaaattcccgccaaatttaattttctcggc
catctgccaaattaaattccctccgaaaaatttttttcggccatccgcca
aattaaattcccgccaaaatatcttcctttaatgtaataGTCTATGAAAT
GAAGCATTGTTTCATCACCTTATGATGGTCAGTcatcatatttttctttc
taaaaatattttttggtcatttttcttactttttcatTCACTATTTAGAT
ACACCGATGCAAAGCGGCTTGGAGAGCAAGTGAACGCTGCCAGGTCACAG
ATTAGTAAGTTGTTAGCATTTGTGTGTGTAACTGCAAAGATCTTATTGCA
AATAGTTTAgataattatattttaaagaCTATTAATTTCGATAACTAATT
GTTAAGTTCCGTCGATATGCTGTTTTTACTTCGACTGTTATTGGTtgttg
ttaaccggttactttttcgaagcgggctacatggctttttgcgcaatgca
attggttcttttcgcatgacgacgggcctacattgtccagagtNTTTCAA
TTTTCTTCCGAACATTCCTTTGAAATTCCCGATTTCCGTCTAAAATTCCG
gaaatttagaatatttttcccaAATTCCGAAACTCCGGCCGTTTTTGTGC
CAAATTCCTTTTTTACGGGCTGAGACAGACCAATTTTCCGTTTTCGACAT
AGGACTTAATTTTCGAAGTACCGTCCAAATTTTCgtcaaattccgccact
ccgccCGAAAAAAAGCATGATTCCGCTACTCCGCCAACCGTGAACCCCCT
CTTTTACATATAGTTAACATCTATTAACCCTTAAATAGATTTAGAACGCT
ATGCTTGATTTGAGTCGTAAGATTAGCATTTTATGTTACTCGGTGTTTCG
AAGATGTGTTCAATTAGAAGCAATGTTACAAAAgcttttaaaagatattt
ttatattttcttaattcAAAGACTGAGTATTTTTACTTTGTAAAATTTGT
CgataaagaatatttttcacctGTTTGTTTGTAATTTCGACACCGAGCTT
GTTTTCAACTTAATTTTTTGGTCCTAGGTGAAACTAGTATATAATTTAAT
CTCACTTTTTTTTCCGTTTCAGCGGCGAGTGGTAAGAAGAACATGtcaga
agaagatgaagaagaaaatgaaataagACAAAACCTcgatcaacaaaaac
aaaagtatttTGATTATCAAATGTTCTTTGTATTTGGTATCATTATatct
ttcaatttcatttcggCTCTTTTAGAACGTttaaaaaaatcgagaaaaac
cagaacaaaaatattcttcaaatttAATGTTGGCTCCTCCTAGATTTTGG
TAGGATAGCTACtgtcaaattaaatttgaattctGAAGTCTGACCAAAGG
CCGACTAAATTAGGTCTTTTGCAATGTTATCTGTCCAGAAGCGCCACTGC
CAGTGCATCACTGACTAATATGCAAATTTGTTGAAGACTTTCATATTCAC
GATTTTCAGGTACAAACAATCGTTCAACCAATTGAAAGCTTTGAAGACAG
AAATCGAACACATGCAATATCTGttagagaaatcgaaagtgaaactgcAG
AATGATTTTGAAACGTGGTGGAACGAGCAAACGATATCTCAAGACGAAAT
CATACAAAACGTATACTTTTGTTATTTATAAATATTcgtcattagcgagt
ttataaaACACCGCTTTTGCGGATAGGGATAGTGAATGTAGTGATGTGGA
ACAACCCGTAGTTTTGACCCGCCAAACCGAGGGTGGTAAGAATGCTGATT
TTTTGTCATCTTCAGCTAGTCCGAAAATAACCGCCTTTAACTGGACGGAC
TTTTAGCTTATCAGCCGGTTAAAAAAGCCATATGGTTTCTCCAAGATCTA
AGAaggattgaaaataaaacaacatcTTTTAAAGGAGCAAGGTTCTAAAA
TGGACATCTCAAAAATATGTGATTTATTTTTCTATCGGTATTGCCTTTTC
CGTTAAGAggatcatttcaaaaaatccttTCTTGATTTTAACAGCCACTC
GATATTGGCGTTCGTAAAGCGTGGCGTACACCTCCGCCCTTGACACCACT
CGAATCAACACCCTTTGCGCCCAATGACGAAACGAGGAAAGGAGAGAGAC
ATTCTTTAaggaaaagtgaaaaatcaGGCAGTTCTTCACTAAGTAATAAT
GAACAATACAGACAAAGTCATTCATCCATAAATAACGATAATTGTAACCC
AAATTACAACGGAAGCAAAGAAAGACTAGCACCTGGATATGACACTAAAT
ATGACTCGAATCCATCCAGTAATATTAAAGAACATTCACGAAACTCAATA
CTATCAAGTCAGCAAAATTCGAAGAATAATTCTCGAAATTCTGTACTCTC
AAGTATACAACAAAAACATTCAATAACAGCAGCATCATCAACCAATCAAA
TGCAATCACGTGATTCAAGTGTGTCTGGTAATGGAGAACGTCCGAAATCG
TCAGGTTTACGTTTGACAGGTGATCCGGACACTGATGACGATATAATGGC
TTTCATGAAAGCACGTCAAGAAATATTAAAGAGAAGTAAGTATTACATGG
TATGTCGGCAGtatattggcaatttttttACCTTCGCAAAATCAGCCTTA
GCTTTAGAGTTCGATGAGAGGAACTTTAAAGCTAAGACTGATTTTGTGAA
GGTGAAAAATTAGCCAACATACTTGATAATCCATAATCAGTAACATAACA
CAGTGCAATTTCATTAGTACCGTTTTGAGACACATGGAAATGGAAGCTTC
AGGTTGTAGCTGAAGTTGCTGTGAAGAGTCCAGTCTTTCCTTTAGTGTTT
GGGGATTACACTCCATTAGCAGCGGTTATAGTTGAAAGATTTCTTAGACC
GTGGGCTATTATTATCTTGTGATATCATTAGCACACTCATCATAAAAGta
ccaaaaaaataagaccagCCGAACTTCTTAACTTACAggctcttataaaa
agtgtattTTATAGTCTAAGGGGCTCATGCTACAGATtgattgaaaatct
aaaatgaacCAATGTttaatcaaattataaaaatcaagTAGGTCTATTTT
CATCGAAATAATTGGTTGTACTTTACACTGTCAAAAACCACTTCATATAA
ACGTAAACAAACTAATTCAACCCATCAAAGTCGACAATTTTCCATATGAT
TTATGACATTTTGGACGTGAATTACCTTTTGTCTCGACTGTCGATGATTA
GTAATTGTAAAGTTGCCTTTAATTCGAATCAATAAAACGGTTGCCCCCTT
TCATACAAAAGACTCCTGCAaaacaatacacgttttttatttgGTCTAAG
ATTATGAGAACATTGAGACTgaaattttaggaaaaattagaacatcttaa
gaacattaccaaatttccaaatttggtcaaaattatcTGAATTATAAGAA
ATTTTCGTAATCGCAGTGATGCTTTTACTTTTCAACTttaaactaaagtc
tattcacgataagtgtgcactcttttttcttttacctataacttttgaag
gaaatcttcaatctttataaatttggtatcgttggagagatattagtgag
tggaacaatttgaaataaaaaagttttaaaaaaaattctaaaaacgaaga
tgaaaataaagaagaaaaaaatgaagatcttgtagaaaagtgctataact
ttaattttcgcTGGAgaaattctttgatcttagaaggtcatcactgtgaa
gaaatttcactaaaatatttattcaatataaagttacgatacaaagttaa
taagtgattgactccaaaaaacagcagaaaacagcagaaaacagcgtttt
tagacgtcaatcagcttataactttgtttgatatctttcgactgaatgat
tatttttgagaaatcttttcacattgatgacgttcgatgattaaggattc
acttcagtgaaaatgatagttatagcacttttcaaCAAGATCttcgtttt
tttcttctttattttcatcttcatttttagaatttttttaaagatctttt
tatttcaaattgttccactcactaatatctttccaatgataccaaattta
taaagattgaagaattccttcaaaagttataggtaaaagaaaaaagagtg
cacacttatcgtgattAGACTTTAGAGCAGAATTGTTCGACTTGAGGGCC
GATATTTATCATCCAAGGTAACTTTGTATATTTTGAGTTAATCAATTTCA
AGACCGCTAATAAGAAcatttgaggctcaaaattatcaataaaatCAGGC
TTAGCGGAAATTAagatattttataagaaaagcgTGTAATGATGTGTGGT
AGTCCCTTCAGAGTCGAATTTAAGTGTCAATTTTATCGTGCATTAGGGGG
GTTCAAATTTTTCTATCAAATAGATTTATCATTTTAAGTGTCATTCTCGG
TCAAAAGTCTGATCTGAATTCATTAACCTGCGCTGTCACCGTTTGAATAT
CAAGCAAccattgaagaaaaaaagttacatttcGCTTTGATAGACTAAGA
CCTCGGTTATTATAGGGGGTCTGAAAAATCTATATATGGGTTGGGGGTTG
GCCTTTATGGGGGTTGATTATATAGGGGGTTTGAACcacctacaatcatg
gtcgaaacatattgagattttagtgtatttaaacgtttttcagaatttaa
agttcgggtgagatttgatattttagcacttccactttcttttatcgaat
attttgattttggaggggttcggtggcttctaggctatattccaagcctt
attggagcaaatttgagcttttaaatcctgagatcctaagtttctaagtc
ttaagtctcatgttaaaactctccAACTTcagtttaacgcgcttaaaaat
catttgtggtgtttaaattttcgcagggaaatcccctttgtgtcaaatgt
tttgtccatgattgtagaaaaCTATGGTTGAGTATACAAGTTGAAAAACT
AATACAACAATTTCTGTATTACTGACTCATGGAGTGGCAGTCATCGTCAC
GTctctgtgacgtcattttaatcACGATGCCATAAACATTgcgtaaattt
tgatttttctgcaGGTCAAAGGTGATAGAGGGCATTCATAATTGAGCAAT
CGAGCACAAATGGATCCAAGAGACAGCAAACATGACACGAAGAAATATTT
GTCATTACATTAAAAGATGATGACGTAGAATCGATTAATATTTCCGATTC
AAATCATCAAGTATATTTCCTTGTTGGCTGAAATCTCACTTGAATGGTGC
CATAATGCATTagtattatttttattgaatgaTAACCAACCTGCTATTAC
AATCCCTAGCTGAGCACTTTTAACGTCATAATAACGCCGTTCTAACGTTC
ATAAAGTCACAAGGTCCATTTAACGTCCATTCATTTGAGCATTTGaggta
gttttgccaaaaattcgagaaaaaatgGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042248XLOC_042248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067661-exon-scaffold_472-1491911889:299915..299966TCONS_00067661-exon-scaffold_472-1491911889:299915..299966Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1510915933:299915..299966TCONS_00067661-exon-scaffold_472-1510915933:299915..299966Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1575043694:299915..299966TCONS_00067661-exon-scaffold_472-1575043694:299915..299966Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1491911889:300560..300641TCONS_00067661-exon-scaffold_472-1491911889:300560..300641Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1510915933:300560..300641TCONS_00067661-exon-scaffold_472-1510915933:300560..300641Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1575043694:300560..300641TCONS_00067661-exon-scaffold_472-1575043694:300560..300641Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1491911889:302574..302724TCONS_00067661-exon-scaffold_472-1491911889:302574..302724Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1510915933:302574..302724TCONS_00067661-exon-scaffold_472-1510915933:302574..302724Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1575043694:302574..302724TCONS_00067661-exon-scaffold_472-1575043694:302574..302724Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1491911889:303109..303649TCONS_00067661-exon-scaffold_472-1491911889:303109..303649Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1510915933:303109..303649TCONS_00067661-exon-scaffold_472-1510915933:303109..303649Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1575043694:303109..303649TCONS_00067661-exon-scaffold_472-1575043694:303109..303649Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1491911889:306179..306545TCONS_00067661-exon-scaffold_472-1491911889:306179..306545Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1510915933:306179..306545TCONS_00067661-exon-scaffold_472-1510915933:306179..306545Clytia hemisphaericaexon
TCONS_00067661-exon-scaffold_472-1575043694:306179..306545TCONS_00067661-exon-scaffold_472-1575043694:306179..306545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:299915..306545 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.30003	4.39487	1.16345	0.419358	6.2722	4.84111	3.96326	3.27639	2.46099	2.97306	3.41538	3.09757	1.41475	1.0957	1.97564	2.04327	1.98936	2.33031	1.53307	1.5842	1.88242	1.47929	5.47749	5.54358	2.38068	2.74656	2.27415	1.74113	4.98222	4.1995
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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