Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067699 ID=TCONS_00067699|Name=TCONS_00067699|organism=Clytia hemisphaerica|type=transcript|length=2251bpRun BLAST on NCBI protein sequence of TCONS_00067699-protein >TCONS_00067699-protein ID=TCONS_00067699-protein|Name=TCONS_00067699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp MMRSMLVRCQYCQINRVNAFLSSKRCIVASTQQYAKTVAIHSNITVHDLARun BLAST on NCBI transcript from alignment at scaffold_472:383342..389364- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067699 ID=TCONS_00067699|Name=TCONS_00067699|organism=Clytia hemisphaerica|type=transcript|length=6023bp|location=Sequence derived from alignment at scaffold_472:383342..389364- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_472:383342..389364- >TCONS_00067699 ID=TCONS_00067699|Name=TCONS_00067699|organism=Clytia hemisphaerica|type=CDS|length=10170bp|location=Sequence derived from alignment at scaffold_472:383342..389364- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00067699 vs. Swiss-Prot (Human)
Match: IF2M (Translation initiation factor IF-2, mitochondrial OS=Homo sapiens GN=MTIF2 PE=1 SV=2) HSP 1 Score: 228.024 bits (580), Expect = 9.929e-64 Identity = 115/228 (50.44%), Postives = 156/228 (68.42%), Query Frame = 3 Query: 1449 DAGVSFPRPPVITIMGHVDHGKTTLLDYLRKTQVAENEAGGITQAISAFSVKVPGLSDSITFVDTPGHAAFNNMRARGAQTTDAVVLIIAADDGIMEQTVECIKHIKKADVPLIVAFNKMDKPKANTDKIKKDLLTHGLQLKEQGGDIDCVEISALKGNNVDELLVLLNGLSKKHTFKASYDGPAQIVVLETENSKQKGMTSMVLVKHGQLSKGKVLMTDDGFIKVNI 2132 D + PR PV+TIMGHVDHGKTTLLD RKTQVA E GGITQ I AF V +P + ITF+DTPGHAAF+ MRARGAQ TD VVL++AADDG+M+QTVE I+H K A VP+I+A NK DK +A+ +K+KK+LL + + ++ GGD+ V +SAL G+N+ L L++ KA +GP + V+E+ K +G+ + +++ G L KG VL+ + KV + Sbjct: 172 DPALLTPRSPVVTIMGHVDHGKTTLLDKFRKTQVAAVETGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQVPIILAVNKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVPVSALTGDNLMALAEATVALAEMLELKADPNGPVEGTVIESFTDKGRGLVTTAIIQRGTLRKGSVLVAGKCWAKVRL 398 The following BLAST results are available for this feature:
BLAST of TCONS_00067699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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