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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067726 ID=TCONS_00067726|Name=TCONS_00067726|organism=Clytia hemisphaerica|type=transcript|length=1778bp
gaccagcggcacgtcccgtACCCAATTaacctaagtgcccccccccctgg
agtTATATATCATTCATGATATACCAATGATTAGATATTAAAATGTGATA
AAACATTCCTTGTTTGAAGATGAAAGTCCTTCTAaagtttatagtttttt
tttcctgaaaacCCTAAATTAGTTTAGAGATTTCTTGGTTTTCAGAATTC
AATGTTTTACAAATATAAAACTAGGAAGAACCTCTTTTTCCTTTAATTTA
GATTAACTTTTTCTTGAACTtattgtgttttctttttgcaTTTTCAGTTA
ATAGTCTCTCTCGACGTACCAGTGATATTTGGTTAAGTGGCTCTCATCTA
AAATGATTTCTGCATCAAGAAATgtgttgaaaacaaaacacCATATCCTA
AATGTATTAAAGACTGGAATGGCAAATATAGACGAACAGATTGGCATCAT
CATGCATATCTTGGGATGTATTTCCCATATTGCTGGCTGCTATATTCTTC
TCAACACAAGCCATTCAAATCATCTCATGGATTCACAGAGATTATATCTA
ATCTACTTAAGCATTTCAGAAGGACTTTATTGTCTTGCCTTCACTTTATT
CTATATTGGTCTCGGCTACCAGCTCCCATCATTGAAGAACTTCTCTTTCA
TCATTGGCAgtggattttatcttttctaCATTTGCATCATAATGCTTTTG
ACGATGGATCGAGTCTTAAATGCAAGAATGCATCGTACCTATCTTGCACT
GTGGTCAAGGAAAAGAGCACATCTTTCAGCCTGCTGTTCTGGAATCTTAG
CTCTGGCTACAACCATTGTCTCCATTATCATGCtcccaaattttgaaata
tcattTAAAATTATGTCGCTTTACATTTATCCTACTATCGGTTTTACCTG
TGTTTTCTTTCTCATCTTTAGCTACGTctatctttttcacaaaatccgTT
CGTTTAGAATCTGTTACATTGCCCCGATGATTGTGATCAGTCCAGTTCAA
GTTGTCAATAAGGAATCAAGTGTTAATCAAGACAGTGGAAGTCAATCGAC
AGTCGATAATAACCAGCAAATTGAACGAAACAATCCTGGAAGATTGGAAG
ACGATCAAAGTCAACAATCAAGACGAAATCAAGGGAGATTAGAGAATCAA
GCTTCCGAAGAAGAGTTGAGATCAGAGTTTGAAACGTCTGAAATTCATGG
AGCCGAGGAAGAAGACAATGGGCAACCTCCTCATCAGAATAACAACGTGA
AACGTGAGCAAGTAAGAGGACAAAGGCGAAATCAACGGAACTTAGCATAT
GAAGAAGGGTTAAGATCAGAGTTTGAAACATCTGAAATTCATGGAGCCGA
GGAAGAAGATAATGAGCGACCACGGCAATCTCCTAGTGATCAAAACGGAC
ATGAGCAAAGTAGAGGACGAAAACGGCAGCAGCAACAACAGCAACAGGTC
AACAGAATTTATGAACATCTTAAAAGAAGTATTTGTGTCCCTGTACTTCT
AGTCTTGACATACATTGTATTTTACATCATCCCTGACCAAATGCACTTCT
GGATGCATTTAGCAAACAAGGAGCTCTCAGGAGAAGTACTGATCCTTTTT
GGGGTTCTTTATCCGATGTCACCAATTTCTGATGCAttcatatatatttt
ctttaGAAGACAATCAAGACAAtttttaaaaagacaattatTAAGATTTT
TAGAGAGTGTTGATTTACgttaattttttgtattttttgtaaacttaaaa
aaatttattgtatACTTGCACTTGCACA Run BLAST on NCBI protein sequence of TCONS_00067726-protein >TCONS_00067726-protein ID=TCONS_00067726-protein|Name=TCONS_00067726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
MISASRNVLKTKHHILNVLKTGMANIDEQIGIIMHILGCISHIAGCYILL
NTSHSNHLMDSQRLYLIYLSISEGLYCLAFTLFYIGLGYQLPSLKNFSFI
IGSGFYLFYICIIMLLTMDRVLNARMHRTYLALWSRKRAHLSACCSGILA
LATTIVSIIMLPNFEISFKIMSLYIYPTIGFTCVFFLIFSYVYLFHKIRS
FRICYIAPMIVISPVQVVNKESSVNQDSGSQSTVDNNQQIERNNPGRLED
DQSQQSRRNQGRLENQASEEELRSEFETSEIHGAEEEDNGQPPHQNNNVK
REQVRGQRRNQRNLAYEEGLRSEFETSEIHGAEEEDNERPRQSPSDQNGH
EQSRGRKRQQQQQQQVNRIYEHLKRSICVPVLLVLTYIVFYIIPDQMHFW
MHLANKELSGEVLILFGVLYPMSPISDAFIYIFFRRQSRQFLKRQLLRFL
ESVDLR Run BLAST on NCBI transcript from alignment at scaffold_473:120871..125307+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067726 ID=TCONS_00067726|Name=TCONS_00067726|organism=Clytia hemisphaerica|type=transcript|length=4437bp|location=Sequence derived from alignment at scaffold_473:120871..125307+ (Clytia hemisphaerica)
gaccagcggcacgtcccgtACCCAATTaacctaagtgcccccccccctgg
agtTATATATCATTCATGATATACCAATGATTAGATATTAAAATGTGATA
AAACATTCCTTGTTTGAAGATGAAAGTCCTTCTAaagtttatagtttttt
tttcctgaaaacCCTAAATTAGTTTAGAGATTTCTTGGTTTTCAGAATTC
AATGTTTTACAAATATAAAACTAGGAAGAACCTCTTTTTCCTTTAATTTA
GATTAACTTTTTCTTGAACTtattgtgttttctttttgcaTTTTCAGTTA
ATAGTCTCTCTCGACGTACCAGTGATATTTGGTTAAGTGGCTCTCATCTA
AAATGATTTCTGCATCAAGAAATgtgttgaaaacaaaacacCATATCCTA
AATGTATTAAAGACTGGTAAGTAATtgattttctcttttgttttatATAC
ACCCAAAAATGGCCTAGTTCTAAACCCCGGTTGGATAACGAGTAAACCCG
GTCAACATTAGAGTAGTTGTGAGATtaacccccggggggggtactcaGGC
AAATGGAGGAtatggtatgtgccgcccttaagggtaccttttttggactt
ccaaagtcccgctaagggtctgaaaaatcagaaaatcaaatttcagtccc
actgagggtcgaaaaattggaaaatttcaactttttaccccctgaaagat
cgaaatttggtcaaatttgtcccgctaagggtcgcaaaattcccaaaatt
ttccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNctttagtcccggtaagggtccaaagNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccc
ccccccccgtcagctcgcaaccctagtacccccccggggaTTAACCTAAC
TCGAAGAAATTTGGCAAATAACCTTCTCTTTTCTAAAAGCTTCCAGGGGA
GGGAGCAAACGAGGGTTTTGATTTCCGAAATACTGAAGAATTTTGTCGTG
ATTTCCGAAATTTTTTGTAGGCTCCCCATATCTTTGAAACACTGTGCAGT
AAAAATCTTTACTGatagattttcagatttttgttaACCAATAAACAAAA
TTTTGCCCATTCAAATTCGTTTCTTTAAGGCTGGGGGAGACAGAAGACAA
AAACGTCCTTGCCATCAATATATATAataaagaaatcatagcatgaaTCT
CCAAGCCACAGCACGGGATGTATAGTTTTTCTTGGTTTTCTGGAGAAGCT
CAATGTTCGATTTTTGTTCCCTTATATCACATACACTAATcactatttta
atttttttttattgaaatcttttttaccACCGAAATACTCGGTATATATT
TAATGAACtttattgttttaaaactttttaaagcaCGAACTGTTATGGTT
AGAACCatcaatcaaaatggtttgttCGCTCGTGGTCCTTGGTCTAGTTA
AAACTAAGCAACTATTAACTTTCATGATTTGAAAGAAAGAGAAATCAGGT
CTTTAGTGGCAAGATTTTGAAACAGGGGGCTCTCAAGAATAATCTAAATT
TTGGGATAGTAGATGGCACAATAAAGTTCCATAAGGGGCcccccagtggt
ttgcgtgaatgcgtgattttcggttgcgtgaatgcgtgaaaattgggaaa
aaaatgtGTGAATGCCTGAATTAacaaaacttgcgtgaacgtgaaaattc
gctctttgattgcgtgaatgcgtgaatctgggctattttttgcgtgaata
cgtgaattttcccttttttccaccgatcatgtgtagttttcccgattttc
caatgttcccccgatttttcccgaaaattttccgatttcctgcaaaaatc
gggttattgcgtgaattgagggtccacTGGGGGAGCCTCCATAAGCCTAT
CATAATAAGACACTGTGGTATTATTTACAATAAAATAAATGCAGAACACT
TCAATTGAAGTGTTTAGAAGGTTTATAATAAGACCTTGATATCAAAACCC
TTGGTGGgttaatttttatttaatgAATATATTcctgatatatttttcaa
gtaaatATGTTTTGAATCCATCCTCCAAACCCACACGGTTAACTTATTat
tgccgccatctttaaaaaagcatttaacGAAAACACTCTAGTAAAGACCA
ATTAGCACGGAAGCATTCTTCAATATTTTCCCATTTCTCAATGGCTTCGT
cataaaaagtatataaaaaatTATACTGACCAAAAGCGATTTGTTATGTT
tgagataaattttttttttcaagtttcgATTGTGCATCTACTATGAAGAA
CTTTATAAGAAGTATTGCGGTTCAGAATCTGATTCTTCCGTAGGTGGATA
AAGTAAAAAGCTATTATACTAAAAATGTATAAAGTAGAGTATTTTTTAAG
ATTGCTTTCATTTCAAAGTATTCTCTTATATGCTTCATACTTAAGGTTAA
ACTACCTATCtacttcatcattttcaaaatgtgtACTTTAAAGTTTACAC
GTTAAGAGAGCGatcagaaaaatatatttctgtGGCGCAATCCGTAAAAT
ACCGGTTTTGTGGTTTTTGAGATTCCGGATCtttgatattgaatttttcG
AGTTATGTGCATTTTAAACGAAATAGATGGAAATAGGTTTATATGCAAGT
TTCACTCTTATTTGCGTCCAGGAAAGTTTGAATTTCCGACCTAAACATTC
CCCGAAAGTCAGAATTTCGACGCCAGTAGGGGTATGTTTTTAGACGGTTT
TTAGCGTTTAGCATGAACTTTTTTGCCTAAGGCACATTGATAAGATTGGA
TTTTTGAGTCAGGCAGACTTCTCTACAAAGGGACAGGGGTGACAAAAGGT
TTGATCTCCTCAACATGTAGTACGTGTACGGTATTCTTTCTGTAAAAGCT
CATTTTTACTTGTTATTCGTTACAGGAATGGCAAATATAGACGAACAGAT
TGGCATCATCATGCATATCTTGGGATGTATTTCCCATATTGCTGGCTGCT
ATATTCTTCTCAACACAAGCCATTCAAATCATCTCATGGATTCACAGAGA
TTATATCTAATCTACTTAAGCATTTCAGAAGGACTTTATTGTCTTGCCTT
CACTTTATTCTATATTGGTCTCGGCTACCAGCTCCCATCATTGAAGAACT
TCTCTTTCATCATTGGCAgtggattttatcttttctaCATTTGCATCATA
ATGCTTTTGACGATGGATCGAGTCTTAAATGCAAGAATGCATCGTACCTA
TCTTGCACTGTGGTCAAGGAAAAGAGCACATCTTTCAGCCTGCTGTTCTG
GAATCTTAGCTCTGGCTACAACCATTGTCTCCATTATCATGCtcccaaat
tttgaaatatcattTAAAATTATGTCGCTTTACATTTATCCTACTATCGG
TTTTACCTGTGTTTTCTTTCTCATCTTTAGCTACGTctatctttttcaca
aaatccgTTCGTTTAGAATCTGTTACATTGCCCCGATGATTGTGATCAGT
CCAGTTCAAGTTGTCAATAAGGAATCAAGTGTTAATCAAGACAGTGGAAG
TCAATCGACAGTCGATAATAACCAGCAAATTGAACGAAACAATCCTGGAA
GATTGGAAGACGATCAAAGTCAACAATCAAGACGAAATCAAGGGAGATTA
GAGAATCAAGCTTCCGAAGAAGAGTTGAGATCAGAGTTTGAAACGTCTGA
AATTCATGGAGCCGAGGAAGAAGACAATGGGCAACCTCCTCATCAGAATA
ACAACGTGAAACGTGAGCAAGTAAGAGGACAAAGGCGAAATCAACGGAAC
TTAGCATATGAAGAAGGGTTAAGATCAGAGTTTGAAACATCTGAAATTCA
TGGAGCCGAGGAAGAAGATAATGAGCGACCACGGCAATCTCCTAGTGATC
AAAACGGACATGAGCAAAGTAGAGGACGAAAACGGCAGCAGCAACAACAG
CAACAGGTCAACAGAATTTATGAACATCTTAAAAGAAGTATTTGTGTCCC
TGTACTTCTAGTCTTGACATACATTGTATTTTACATCATCCCTGACCAAA
TGCACTTCTGGATGCATTTAGCAAACAAGGAGCTCTCAGGAGAAGTACTG
ATCCTTTTTGGGGTTCTTTATCCGATGTCACCAATTTCTGATGCAttcat
atatattttctttaGAAGACAATCAAGACAAtttttaaaaagacaattat
TAAGATTTTTAGAGAGTGTTGATTTACgttaattttttgtattttttgta
aacttaaaaaaatttattgtatACTTGCACTTGCACA Coding sequence (CDS) from alignment at scaffold_473:120871..125307+ >TCONS_00067726 ID=TCONS_00067726|Name=TCONS_00067726|organism=Clytia hemisphaerica|type=CDS|length=2742bp|location=Sequence derived from alignment at scaffold_473:120871..125307+ (Clytia hemisphaerica)
ATGATTTCTGCATCAAGAAATgtgttgaaaacaaaacacCATATCCTAAA
TGTATTAAAGACTGGAATGGCAAATATAGACGAACAGATTGGCATCATCA
TGCATATCTTGGGATGTATTTCCCATATTGCTGGCTGCTATATTCTTCTC
AACACAAGCCATTCAAATCATCTCATGGATTCACAGAGATTATATCTAAT
CTACTTAAGCATTTCAGAAGGACTTTATTGTCTTGCCTTCACTTTATTCT
ATATTGGTCTCGGCTACCAGCTCCCATCATTGAAGAACTTCTCTTTCATC
ATTGGCAgtggattttatcttttctaCATTTGCATCATAATGCTTTTGAC
GATGGATCGAGTCTTAAATGCAAGAATGCATCGTACCTATCTTGCACTGT
GGTCAAGGAAAAGAGCACATCTTTCAGCCTGCTGTTCTGGAATCTTAGCT
CTGGCTACAACCATTGTCTCCATTATCATGCtcccaaattttgaaatatc
attTAAAATTATGTCGCTTTACATTTATCCTACTATCGGTTTTACCTGTG
TTTTCTTTCTCATCTTTAGCTACGTctatctttttcacaaaatccgTTCG
TTTAGAATCTGTTACATTGCCCCGATGATTGTGATCAGTCCAGTTCAAGT
TGTCAATAAGGAATCAAGTGTTAATCAAGACAGTGGAAGTCAATCGACAG
TCGATAATAACCAGCAAATTGAACGAAACAATCCTGGAAGATTGGAAGAC
GATCAAAGTCAACAATCAAGACGAAATCAAGGGAGATTAGAGAATCAAGC
TTCCGAAGAAGAGTTGAGATCAGAGTTTGAAACGTCTGAAATTCATGGAG
CCGAGGAAGAAGACAATGGGCAACCTCCTCATCAGAATAACAACGTGAAA
CGTGAGCAAGTAAGAGGACAAAGGCGAAATCAACGGAACTTAGCATATGA
AGAAGGGTTAAGATCAGAGTTTGAAACATCTGAAATTCATGGAGCCGAGG
AAGAAGATAATGAGCGACCACGGCAATCTCCTAGTGATCAAAACGGACAT
GAGCAAAGTAGAGGACGAAAACGGCAGCAGCAACAACAGCAACAGGTCAA
CAGAATTTATGAACATCTTAAAAGAAGTATTTGTGTCCCTGTACTTCTAG
TCTTGACATACATTGTATTTTACATCATCCCTGACCAAATGCACTTCTGG
ATGCATTTAGCAAACAAGGAGCTCTCAGGAGAAGTACTGATCCTTTTTGG
GGTTCTTTATCCGATGTCACCAATTTCTGATGCAttcatatatattttct
ttaGAAGACAATCAAGACAAtttttaaaaagacaattatTAAGATTTTTA
GAGAGTGTTGATTTACgttaaATGATTTCTGCATCAAGAAATgtgttgaa
aacaaaacacCATATCCTAAATGTATTAAAGACTGGAATGGCAAATATAG
ACGAACAGATTGGCATCATCATGCATATCTTGGGATGTATTTCCCATATT
GCTGGCTGCTATATTCTTCTCAACACAAGCCATTCAAATCATCTCATGGA
TTCACAGAGATTATATCTAATCTACTTAAGCATTTCAGAAGGACTTTATT
GTCTTGCCTTCACTTTATTCTATATTGGTCTCGGCTACCAGCTCCCATCA
TTGAAGAACTTCTCTTTCATCATTGGCAgtggattttatcttttctaCAT
TTGCATCATAATGCTTTTGACGATGGATCGAGTCTTAAATGCAAGAATGC
ATCGTACCTATCTTGCACTGTGGTCAAGGAAAAGAGCACATCTTTCAGCC
TGCTGTTCTGGAATCTTAGCTCTGGCTACAACCATTGTCTCCATTATCAT
GCtcccaaattttgaaatatcattTAAAATTATGTCGCTTTACATTTATC
CTACTATCGGTTTTACCTGTGTTTTCTTTCTCATCTTTAGCTACGTctat
ctttttcacaaaatccgTTCGTTTAGAATCTGTTACATTGCCCCGATGAT
TGTGATCAGTCCAGTTCAAGTTGTCAATAAGGAATCAAGTGTTAATCAAG
ACAGTGGAAGTCAATCGACAGTCGATAATAACCAGCAAATTGAACGAAAC
AATCCTGGAAGATTGGAAGACGATCAAAGTCAACAATCAAGACGAAATCA
AGGGAGATTAGAGAATCAAGCTTCCGAAGAAGAGTTGAGATCAGAGTTTG
AAACGTCTGAAATTCATGGAGCCGAGGAAGAAGACAATGGGCAACCTCCT
CATCAGAATAACAACGTGAAACGTGAGCAAGTAAGAGGACAAAGGCGAAA
TCAACGGAACTTAGCATATGAAGAAGGGTTAAGATCAGAGTTTGAAACAT
CTGAAATTCATGGAGCCGAGGAAGAAGATAATGAGCGACCACGGCAATCT
CCTAGTGATCAAAACGGACATGAGCAAAGTAGAGGACGAAAACGGCAGCA
GCAACAACAGCAACAGGTCAACAGAATTTATGAACATCTTAAAAGAAGTA
TTTGTGTCCCTGTACTTCTAGTCTTGACATACATTGTATTTTACATCATC
CCTGACCAAATGCACTTCTGGATGCATTTAGCAAACAAGGAGCTCTCAGG
AGAAGTACTGATCCTTTTTGGGGTTCTTTATCCGATGTCACCAATTTCTG
ATGCAttcatatatattttctttaGAAGACAATCAAGACAAtttttaaaa
agacaattatTAAGATTTTTAGAGAGTGTTGATTTACgttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067726-exon-scaffold_473-1491911889:120871..121286 | TCONS_00067726-exon-scaffold_473-1491911889:120871..121286 | Clytia hemisphaerica | exon |
| TCONS_00067726-exon-scaffold_473-1510915933:120871..121286 | TCONS_00067726-exon-scaffold_473-1510915933:120871..121286 | Clytia hemisphaerica | exon |
| TCONS_00067726-exon-scaffold_473-1575043694:120871..121286 | TCONS_00067726-exon-scaffold_473-1575043694:120871..121286 | Clytia hemisphaerica | exon |
| TCONS_00067726-exon-scaffold_473-1491911889:123946..125307 | TCONS_00067726-exon-scaffold_473-1491911889:123946..125307 | Clytia hemisphaerica | exon |
| TCONS_00067726-exon-scaffold_473-1510915933:123946..125307 | TCONS_00067726-exon-scaffold_473-1510915933:123946..125307 | Clytia hemisphaerica | exon |
| TCONS_00067726-exon-scaffold_473-1575043694:123946..125307 | TCONS_00067726-exon-scaffold_473-1575043694:123946..125307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_473 | supercontig | scaffold_473:120871..125307 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000998 | MAM_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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