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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067769 ID=TCONS_00067769|Name=TCONS_00067769|organism=Clytia hemisphaerica|type=transcript|length=2142bp
TCCTACCTGCTAAGAACATGCACGAGCAACGAGAGCATGGGCTTGAACCT
TTGACTTCATTACCATCCTCAGAGAAAGAATTAGTAGATGACGATTTATT
CAAATATAGCTTCTCAAGGCTTTGCGTTGGATTGCTACTACTTGATGCCA
ACGATGCTGTCAAAGAAGGTGATGGAGATCGTTTGTTTAGATTCTACAAT
GTATTTACATTCATTTTCCGGATGAATGGAAATCACAAGTATGCCTATGT
ATGTCTTCGCCTAAAGGCAAGAGAACTTGCCCTATCGTCTCCAAGAGTTT
TTCATAGGCTGAAGTGGAATCGTTTTGTGAATAGCAAAGGTGGAAAAGGC
AAAAATATAAGTCTTGATTTGCGATTGGAACATATCAACAAAGTGACAAA
AGCGTTGATCAAATCACAAGGTATGCAAAACCTCACTGACAAAAGTGTTG
AAGACATTTCAAAGGCAATTGGAGGGATGGAGGAATTGGTTGAGTCGACC
CTCCATGAGGCTGGAACCAATAATAAGTCAAATCACCACTCAAATAAATA
CGCACATGAAATGTTCAGCACTCTTTTCAAAGAGATTCACCACAACAGCA
AAAATTTNAAGTCGACACTCCACGAGGCTTGAACCAATAACAAGTCAAAT
CACCACTCAAATAAATATGCGCATGAAATGTTCAGCACTCTTTTCAAAGA
GATTCACCACAACAGCAAAAATGTTCACAAAACACCAGGCAGAAAACTtg
agactttcaaaaaatttaacaatgacattttcaacaaaatgaaCAAAGTT
TCACTGGTGAAATGGATGAAATGCCTTACCAACAAGTGGCACAACCATGA
CTTTTCCTATGACCCAGAAACAGATATATGATTGATAACTCATTAGTCTG
ACAACTAGTGTTAATTTAATTGGCCTGGAGCATGATACAAACTTTGATTT
GGTCAGACATCTGGTAAAAAGTCCTTGGTTTTTGCATGAAAACTGTTTTG
ATTCTAATGTAGgtactagtttttataaaacatTTCATTGTCAGAGTCGA
AATCAATTTCATCATTTGATTTTTCCTTGTACGGCTGTTTCATTGATAGT
ATGTCAATATCATCTTTCTTTGTGTCATCAATTGGCAGTACTTTCAAATT
GTCTATGTAGAACACTTCTTTAAATACCAGGCTCACAAACATGCTGACAG
ATTCATCAAGGCCTAAGGTCAAAAGATCAGTTTCGGTTTGAATACAGTTG
ACATTCTCCATGACCAATTTCACATCTTCATTACTTAAAGTAAGAGCAAC
AAGACAAGCCAAAATCGTTTCTTTCTCTTCGTCATCTGCTGATCtaacac
tttttaattttggggGAGTAATTTCTTCTTTAGTTACAGCACATTCATCA
CACTTGCACATCTTTTCACATTCATCACGACACTTATGCTTTTCATTATC
AAAATCATTATCTGGTACTTCATTGAAACACTTAAGCAAGGCAACTCGAC
GACATTTTTCCTCTTTGTTCTTAATGATCCTTACCAATTCTTCATCCGCA
TTGTGAGCGATATCACAAGGGCGTTAAAAAAAAGCACTACTTTGATCACC
ATCTCTACCGGCTCTTCCAAGCTCTTGGATATAAGCTTCCACATCGCTAG
GTAATCCAACATGGATGACATGTCTTACATTTCTGATATTGACACCCATT
CCAAGGGCTGAAGTAGCTACCATGATAAAACATTTTCCgttgtttttgga
aaattccGTCTTGACAATCTCTTTCAATTCTTGAGGTGTATGACCATGAA
ACATGCCTACAGCTTTCCCCCGGTATCTTCTGTCAAAAAGAAGGAAAACT
TTGCCACAAAGTGCTATGCTGTTGCAGTAGATAATTGTTTTTTGGCAACT
GCCCTTTTGGTTTAAATCTTCAACCATTGGTCTCATATGGTCTATGATTT
CTTGAAAGTCAGTCCCTTGCTTCAGTTTTTTGACCGAGATTTTCACATTT
GGTTTTTCTGGAGATAATCTTGTGATCTTGTGGTTTCTCAGATGTAATAG
TTGGActatttttcttcttgtttttttatttgccGTTGCAGTAAGGCACA
TGAATTTCTTGCTATACATGGCAAGTAAGTTTCCAATTTCAC Run BLAST on NCBI protein sequence of TCONS_00067769-protein >TCONS_00067769-protein ID=TCONS_00067769-protein|Name=TCONS_00067769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
LPAKNMHEQREHGLEPLTSLPSSEKELVDDDLFKYSFSRLCVGLLLLDAN
DAVKEGDGDRLFRFYNVFTFIFRMNGNHKYAYVCLRLKARELALSSPRVF
HRLKWNRFVNSKGGKGKNISLDLRLEHINKVTKALIKSQGMQNLTDKSVE
DISKAIGGMEELVESTLHEAGTNNKSNHHSNKYAHEMFSTLFKEIHHNSK
NXKSTLHEA Run BLAST on NCBI transcript from alignment at scaffold_474:59638..61779 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067769 ID=TCONS_00067769|Name=TCONS_00067769|organism=Clytia hemisphaerica|type=transcript|length=2142bp|location=Sequence derived from alignment at scaffold_474:59638..61779 (Clytia hemisphaerica)
GTGAAATTGGAAACTTACTTGCCATGTATAGCAAGAAATTCATGTGCCTT
ACTGCAACggcaaataaaaaaacaagaagaaaaatagTCCAACTATTACA
TCTGAGAAACCACAAGATCACAAGATTATCTCCAGAAAAACCAAATGTGA
AAATCTCGGTCAAAAAACTGAAGCAAGGGACTGACTTTCAAGAAATCATA
GACCATATGAGACCAATGGTTGAAGATTTAAACCAAAAGGGCAGTTGCCA
AAAAACAATTATCTACTGCAACAGCATAGCACTTTGTGGCAAAGTTTTCC
TTCTTTTTGACAGAAGATACCGGGGGAAAGCTGTAGGCATGTTTCATGGT
CATACACCTCAAGAATTGAAAGAGATTGTCAAGACggaattttccaaaaa
caacGGAAAATGTTTTATCATGGTAGCTACTTCAGCCCTTGGAATGGGTG
TCAATATCAGAAATGTAAGACATGTCATCCATGTTGGATTACCTAGCGAT
GTGGAAGCTTATATCCAAGAGCTTGGAAGAGCCGGTAGAGATGGTGATCA
AAGTAGTGCTTTTTTTTAACGCCCTTGTGATATCGCTCACAATGCGGATG
AAGAATTGGTAAGGATCATTAAGAACAAAGAGGAAAAATGTCGTCGAGTT
GCCTTGCTTAAGTGTTTCAATGAAGTACCAGATAATGATTTTGATAATGA
AAAGCATAAGTGTCGTGATGAATGTGAAAAGATGTGCAAGTGTGATGAAT
GTGCTGTAACTAAAGAAGAAATTACTCccccaaaattaaaaagtgttaGA
TCAGCAGATGACGAAGAGAAAGAAACGATTTTGGCTTGTCTTGTTGCTCT
TACTTTAAGTAATGAAGATGTGAAATTGGTCATGGAGAATGTCAACTGTA
TTCAAACCGAAACTGATCTTTTGACCTTAGGCCTTGATGAATCTGTCAGC
ATGTTTGTGAGCCTGGTATTTAAAGAAGTGTTCTACATAGACAATTTGAA
AGTACTGCCAATTGATGACACAAAGAAAGATGATATTGACATACTATCAA
TGAAACAGCCGTACAAGGAAAAATCAAATGATGAAATTGATTTCGACTCT
GACAATGAAatgttttataaaaactagtacCTACATTAGAATCAAAACAG
TTTTCATGCAAAAACCAAGGACTTTTTACCAGATGTCTGACCAAATCAAA
GTTTGTATCATGCTCCAGGCCAATTAAATTAACACTAGTTGTCAGACTAA
TGAGTTATCAATCATATATCTGTTTCTGGGTCATAGGAAAAGTCATGGTT
GTGCCACTTGTTGGTAAGGCATTTCATCCATTTCACCAGTGAAACTTTGt
tcattttgttgaaaatgtcattgttaaattttttgaaagtctcaAGTTTT
CTGCCTGGTGTTTTGTGAACATTTTTGCTGTTGTGGTGAATCTCTTTGAA
AAGAGTGCTGAACATTTCATGCGCATATTTATTTGAGTGGTGATTTGACT
TGTTATTGGTTCAAGCCTCGTGGAGTGTCGACTTNAAATTTTTGCTGTTG
TGGTGAATCTCTTTGAAAAGAGTGCTGAACATTTCATGTGCGTATTTATT
TGAGTGGTGATTTGACTTATTATTGGTTCCAGCCTCATGGAGGGTCGACT
CAACCAATTCCTCCATCCCTCCAATTGCCTTTGAAATGTCTTCAACACTT
TTGTCAGTGAGGTTTTGCATACCTTGTGATTTGATCAACGCTTTTGTCAC
TTTGTTGATATGTTCCAATCGCAAATCAAGACTTATATTTTTGCCTTTTC
CACCTTTGCTATTCACAAAACGATTCCACTTCAGCCTATGAAAAACTCTT
GGAGACGATAGGGCAAGTTCTCTTGCCTTTAGGCGAAGACATACATAGGC
ATACTTGTGATTTCCATTCATCCGGAAAATGAATGTAAATACATTGTAGA
ATCTAAACAAACGATCTCCATCACCTTCTTTGACAGCATCGTTGGCATCA
AGTAGTAGCAATCCAACGCAAAGCCTTGAGAAGCTATATTTGAATAAATC
GTCATCTACTAATTCTTTCTCTGAGGATGGTAATGAAGTCAAAGGTTCAA
GCCCATGCTCTCGTTGCTCGTGCATGTTCTTAGCAGGTAGGA Coding sequence (CDS) from alignment at scaffold_474:59638..61779 >TCONS_00067769 ID=TCONS_00067769|Name=TCONS_00067769|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_474:59638..61779 (Clytia hemisphaerica)
TCAAGCCTCGTGGAGTGTCGACTTNAAATTTTTGCTGTTGTGGTGAATCT
CTTTGAAAAGAGTGCTGAACATTTCATGTGCGTATTTATTTGAGTGGTGA
TTTGACTTATTATTGGTTCCAGCCTCATGGAGGGTCGACTCAACCAATTC
CTCCATCCCTCCAATTGCCTTTGAAATGTCTTCAACACTTTTGTCAGTGA
GGTTTTGCATACCTTGTGATTTGATCAACGCTTTTGTCACTTTGTTGATA
TGTTCCAATCGCAAATCAAGACTTATATTTTTGCCTTTTCCACCTTTGCT
ATTCACAAAACGATTCCACTTCAGCCTATGAAAAACTCTTGGAGACGATA
GGGCAAGTTCTCTTGCCTTTAGGCGAAGACATACATAGGCATACTTGTGA
TTTCCATTCATCCGGAAAATGAATGTAAATACATTGTAGAATCTAAACAA
ACGATCTCCATCACCTTCTTTGACAGCATCGTTGGCATCAAGTAGTAGCA
ATCCAACGCAAAGCCTTGAGAAGCTATATTTGAATAAATCGTCATCTACT
AATTCTTTCTCTGAGGATGGTAATGAAGTCAAAGGTTCAAGCCCATGCTC
TCGTTGCTCGTGCATGTTCTTAGCAGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067769-exon-scaffold_474-1491911889:59638..61779 | TCONS_00067769-exon-scaffold_474-1491911889:59638..61779 | Clytia hemisphaerica | exon |
| TCONS_00067769-exon-scaffold_474-1510915933:59638..61779 | TCONS_00067769-exon-scaffold_474-1510915933:59638..61779 | Clytia hemisphaerica | exon |
| TCONS_00067769-exon-scaffold_474-1575043694:59638..61779 | TCONS_00067769-exon-scaffold_474-1575043694:59638..61779 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_474 | supercontig | scaffold_474:59638..61779 . |
Blast
BLAST of TCONS_00067769 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 7.616e-22 Identity = 69/208 (33.17%), Postives = 111/208 (53.37%), Query Frame = -3
Query: 1484 FMCLTATANKKTRRKIVQLLHLRNHKITRLSPEKPNVKISVKKLKQGTDFQEIIDHMRPMVEDLNQKGSCQKTIIYCNSIALCGKVFLLFDRRYRGKAVGMFHGHTPQELKEIVKTEFSKNNGKCFIMVATSALGMGVNIRNVRHVIHVGLPSDVEAYIQELGRAGRDGDQSSA-FF*RPCDIAHNADEELVRIIKNKEEKCRRVALL 2104
+ LTATA+ R IV+ L+LRN +IT ++PN+ + V++ K G Q++ + +G TIIYC S + +V + R + G +H ++ + F ++ +C I AT A GMG+N ++R VIH G P D+E+Y QE+GRAGRDG QSS P DI N + L+ I+N++ + ++ ++
Sbjct: 699 IVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRR-KTGNILQDLQPFLVKTSSHWEFEGP---TIIYCPSRKMTQQV--TGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVI--ATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADI--NLNRHLLTEIRNEKFRLYKLKMM 896
The following BLAST results are available for this feature:
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