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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067772 ID=TCONS_00067772|Name=TCONS_00067772|organism=Clytia hemisphaerica|type=transcript|length=1051bp
GCAGCGTTATCAAAGAATAAATAAACATCTCCAAAACCTCCACTTCGTTA
TCAAGagggagagagagagagagacaaACGCATAAGGGGAGAGGAAGCAA
GATTTTTTTTCGCCTGTCTCCTATTACAGATTTTTctaacaaaaattcat
tttgtctTTATCAGGAAAATTACAGACGTTGAACGGGGGTTACTGATAAA
AATAAAGTACAACGAAATATAAATTGGAAACAACAGGAGGTAGCCCGCTA
TAAAGAGATGTGTAGCATTGGCTACTCTTGCTGCGCCATTCTGCTCTTGT
TGGCAATCTTTGGTCACTTGATTGTTGTAGATTGTGCTCCAATTAACAGT
GGCGATGACCCTTGCAAGTCGAGAAGATGGTGGGGTTGTAAACTGAAGCA
AACTAACAATGGACTTGATAAAGATAAGCAAAAAGAGCAATTTAACAACT
TGTTGCGTGGAGTCCTTGGTGAGTTGGTCAGTGGTATGAAGAATGGACGA
AAACGAGGCTACGATGATCAAGAACTAACGcaactttttgaaaacattga
aaataaacagcaaattgaaaaaatggaaaaagataTACATCAAAATGAAG
TAGAAGAAACGCATCGTCTTTATGGATACCTAAAGATTTTATATGGTCTG
GTTGACGACAAAATTAAAGAGCTAGATCGAAATACACTCGGACAAAATCA
ACAACAGCAAAACACATAACGACGTAGTAAAAACTGAAATATTAACTTTC
ATTAGATGTGGGaataatttattttctcattttcattgaaaattcacTAC
AGGTTTCTTTGCGaaccaattttctttctcagcaAAGTATTAAAAAGAAG
TGAAACTTTTAGCCGAAACGGGCCCCTTTTGTAGTACATACTActaatta
atttatttttcacagTATAAAAATTGTATATAACGATGTATTTAATAACG
ATTTGTTTCGCATTTTACAAAGTGACTGTTTTCCCTTCTTTATTAGCCAG
ATTGTAAGGTGTTTCTATTTTTCCCACGACTCTTGTACCGTCGATCATTA
T Run BLAST on NCBI protein sequence of TCONS_00067772-protein >TCONS_00067772-protein ID=TCONS_00067772-protein|Name=TCONS_00067772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MCSIGYSCCAILLLLAIFGHLIVVDCAPINSGDDPCKSRRWWGCKLKQTN
NGLDKDKQKEQFNNLLRGVLGELVSGMKNGRKRGYDDQELTQLFENIENK
QQIEKMEKDIHQNEVEETHRLYGYLKILYGLVDDKIKELDRNTLGQNQQQ
QNT Run BLAST on NCBI transcript from alignment at scaffold_475:45907..47561+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067772 ID=TCONS_00067772|Name=TCONS_00067772|organism=Clytia hemisphaerica|type=transcript|length=1655bp|location=Sequence derived from alignment at scaffold_475:45907..47561+ (Clytia hemisphaerica)
GCAGCGTTATCAAAGAATAAATAAACATCTCCAAAACCTCCACTTCGTTA
TCAAGagggagagagagagagagacaaACGCATAAGGGGAGAGGAAGCAA
GATTTTTTTTCGCCTGTCTCCTATTACAGATTTTTctaacaaaaattcat
tttgtctTTATCAGGAAAATTACAGACGTTGAACGGGGGTTACTGATAAA
AATAAAGTACAACGAAATATAAATTGGAAACAACAGGAGGTAGCCCGCTA
TAAAGAGATGTGTAGCATTGGCTACTCTTGCTGCGCCATTCTGCTCTTGT
TGGCAATCTTTGGTCACTTGATTGTTGTAGATTGTGCTCCAATTAACAGT
GGCGATGACCCTTGCAAGTCGAGAAGATGGTGGGGTTGTAAACTGAAGCA
AACTAACAATGGACTTGATAAAGATAAGCAAAAAGGTATAACCCTGATTC
TTTCATCTTGATTCGTTTGTCATACTCcttgtatatatatatatggcGAT
GTTACTTTGATAAGAACTAGCCTGACTACCAGCAGGGTTGTACGAAGATT
TATCCTACCTTGGGCCAAGATTCAGCCTTTGACCTCTCCGGATCTTAGGG
AAGTGATGATGGACACGGGGCATtccttttcttattttcacattAGAAAT
TTTTGGAATAGGGTTTTTTTCCATTGAAATGTTTTGCTCTTTTCAACGTA
AGTTATCGCTCAACAACAAATATCATAAACAAAACTCTACCAAATGTAGA
GGATACAGTGCCAGTTGTTTATTTTGCTAAAGGTGTCGGCATCCGATGcc
aaacaaatttatcaaattacAAAATTTACTTTCACCCTTGCCTATGAAAA
GTAGATTCATTTTCCGGTTGGaaaatttgctttgttttgcGGTTGTTtaa
ttgaaatgaaaacattttatacTGACTTTTTGCAAACATGAAGTGAAAAA
ATGTACTCTGGTATCCGAAATTCCGTCTTTcaaattgtaaatatttcaaa
ttttttttagcaatatcCTGATTTTCTTAACATTTCTAGAGCAATTTAAC
AACTTGTTGCGTGGAGTCCTTGGTGAGTTGGTCAGTGGTATGAAGAATGG
ACGAAAACGAGGCTACGATGATCAAGAACTAACGcaactttttgaaaaca
ttgaaaataaacagcaaattgaaaaaatggaaaaagataTACATCAAAAT
GAAGTAGAAGAAACGCATCGTCTTTATGGATACCTAAAGATTTTATATGG
TCTGGTTGACGACAAAATTAAAGAGCTAGATCGAAATACACTCGGACAAA
ATCAACAACAGCAAAACACATAACGACGTAGTAAAAACTGAAATATTAAC
TTTCATTAGATGTGGGaataatttattttctcattttcattgaaaattca
cTACAGGTTTCTTTGCGaaccaattttctttctcagcaAAGTATTAAAAA
GAAGTGAAACTTTTAGCCGAAACGGGCCCCTTTTGTAGTACATACTActa
attaatttatttttcacagTATAAAAATTGTATATAACGATGTATTTAAT
AACGATTTGTTTCGCATTTTACAAAGTGACTGTTTTCCCTTCTTTATTAG
CCAGATTGTAAGGTGTTTCTATTTTTCCCACGACTCTTGTACCGTCGATC
ATTAT Coding sequence (CDS) from alignment at scaffold_475:45907..47561+ >TCONS_00067772 ID=TCONS_00067772|Name=TCONS_00067772|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_475:45907..47561+ (Clytia hemisphaerica)
ATGTGTAGCATTGGCTACTCTTGCTGCGCCATTCTGCTCTTGTTGGCAAT
CTTTGGTCACTTGATTGTTGTAGATTGTGCTCCAATTAACAGTGGCGATG
ACCCTTGCAAGTCGAGAAGATGGTGGGGTTGTAAACTGAAGCAAACTAAC
AATGGACTTGATAAAGATAAGCAAAAAGAGCAATTTAACAACTTGTTGCG
TGGAGTCCTTGGTGAGTTGGTCAGTGGTATGAAGAATGGACGAAAACGAG
GCTACGATGATCAAGAACTAACGcaactttttgaaaacattgaaaataaa
cagcaaattgaaaaaatggaaaaagataTACATCAAAATGAAGTAGAAGA
AACGCATCGTCTTTATGGATACCTAAAGATTTTATATGGTCTGGTTGACG
ACAAAATTAAAGAGCTAGATCGAAATACACTCGGACAAAATCAACAACAG
CAAAACACATAAATGTGTAGCATTGGCTACTCTTGCTGCGCCATTCTGCT
CTTGTTGGCAATCTTTGGTCACTTGATTGTTGTAGATTGTGCTCCAATTA
ACAGTGGCGATGACCCTTGCAAGTCGAGAAGATGGTGGGGTTGTAAACTG
AAGCAAACTAACAATGGACTTGATAAAGATAAGCAAAAAGAGCAATTTAA
CAACTTGTTGCGTGGAGTCCTTGGTGAGTTGGTCAGTGGTATGAAGAATG
GACGAAAACGAGGCTACGATGATCAAGAACTAACGcaactttttgaaaac
attgaaaataaacagcaaattgaaaaaatggaaaaagataTACATCAAAA
TGAAGTAGAAGAAACGCATCGTCTTTATGGATACCTAAAGATTTTATATG
GTCTGGTTGACGACAAAATTAAAGAGCTAGATCGAAATACACTCGGACAA
AATCAACAACAGCAAAACACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067772-exon-scaffold_475-1491911889:45907..46341 | TCONS_00067772-exon-scaffold_475-1491911889:45907..46341 | Clytia hemisphaerica | exon |
| TCONS_00067772-exon-scaffold_475-1510915933:45907..46341 | TCONS_00067772-exon-scaffold_475-1510915933:45907..46341 | Clytia hemisphaerica | exon |
| TCONS_00067772-exon-scaffold_475-1575043694:45907..46341 | TCONS_00067772-exon-scaffold_475-1575043694:45907..46341 | Clytia hemisphaerica | exon |
| TCONS_00067772-exon-scaffold_475-1491911889:46946..47561 | TCONS_00067772-exon-scaffold_475-1491911889:46946..47561 | Clytia hemisphaerica | exon |
| TCONS_00067772-exon-scaffold_475-1510915933:46946..47561 | TCONS_00067772-exon-scaffold_475-1510915933:46946..47561 | Clytia hemisphaerica | exon |
| TCONS_00067772-exon-scaffold_475-1575043694:46946..47561 | TCONS_00067772-exon-scaffold_475-1575043694:46946..47561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_475 | supercontig | scaffold_475:45907..47561 + |
Blast
The following BLAST results are available for this feature:
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