TCONS_00067789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067789
Unique NameTCONS_00067789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067789 ID=TCONS_00067789|Name=TCONS_00067789|organism=Clytia hemisphaerica|type=transcript|length=777bp
attttttatataaatttttgGATGAACTAGGCTACTTGTCTGTCTGTACT
GTACAAAGTTCATAAAAGGATGAAGATAATTAATCCATTCATTGAATTGC
CTGGTTTAATATTGTGTGTGAGGCAGGCAGAGCAGAGAGAGCCAGTAGGT
CCGTATATTTGAGTGAAAGATGCTGATGCGTGGATGGATGATCCGAAGAA
GTCAGAAGatcaaaaaataatgataaNTGAGGCAGGCAGAGCAGAGAGAG
CCAGTAGGTCCGTATATTTGAGTGAAAGATGCTGATGCGTGGATGGATGA
TCCGAAGAAGTcagaagataaaaaaataatgatttaatACCtaaaaatct
tggaaaaaaacGGATAGATCTTGACGCTTGACTGGAAACAGACATGTTGC
ATCGAAAAATAACAGTAGCAATTATTATGAGTGTAATTTGGGAGGGTTCT
TCTTGCTTCCCTGGTGTCTTCCTTGGTGTAGTCCTGGCTTCTGGTCTCCA
GTCACTTGGTCAGTTAGACTTTGGACTTTGGagctaaacaaatattttgg
agCGTGGTAATGACTACACTTAGTTTATTTTTTGCTTCTTACTTTGTTAC
ATATATTGTTAAGTGCGTGTGGCCATTTTTCACTCTCCTTTGTTAGTATC
ATTTTGATATCGTGCCCCTACTTCTTTGATGatatttagaaaaagtatcC
GCGGCAAAGAGCGAAGAATATCGGGCACACAATACAATCCGATTTTCCCG
ATTTACTAATTTTGCTGGACGGACGGC
Run BLAST on NCBI

transcript from alignment at scaffold_475:13788..14564

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067789 ID=TCONS_00067789|Name=TCONS_00067789|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at scaffold_475:13788..14564 (Clytia hemisphaerica)
GCCGTCCGTCCAGCAAAATTAGTAAATCGGGAAAATCGGATTGTATTGTG
TGCCCGATATTCTTCGCTCTTTGCCGCGgatactttttctaaatatCATC
AAAGAAGTAGGGGCACGATATCAAAATGATACTAACAAAGGAGAGTGAAA
AATGGCCACACGCACTTAACAATATATGTAACAAAGTAAGAAGCAAAAAA
TAAACTAAGTGTAGTCATTACCACGctccaaaatatttgtttagctCCAA
AGTCCAAAGTCTAACTGACCAAGTGACTGGAGACCAGAAGCCAGGACTAC
ACCAAGGAAGACACCAGGGAAGCAAGAAGAACCCTCCCAAATTACACTCA
TAATAATTGCTACTGTTATTTTTCGATGCAACATGTCTGTTTCCAGTCAA
GCGTCAAGATCTATCCgtttttttccaagatttttaGGTattaaatcatt
atttttttatcttctgACTTCTTCGGATCATCCATCCACGCATCAGCATC
TTTCACTCAAATATACGGACCTACTGGCTCTCTCTGCTCTGCCTGCCTCA
NttatcattattttttgatCTTCTGACTTCTTCGGATCATCCATCCACGC
ATCAGCATCTTTCACTCAAATATACGGACCTACTGGCTCTCTCTGCTCTG
CCTGCCTCACACACAATATTAAACCAGGCAATTCAATGAATGGATTAATT
ATCTTCATCCTTTTATGAACTTTGTACAGTACAGACAGACAAGTAGCCTA
GTTCATCcaaaaatttatataaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042335XLOC_042335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067789-exon-scaffold_475-1491911889:13788..14564TCONS_00067789-exon-scaffold_475-1491911889:13788..14564Clytia hemisphaericaexon
TCONS_00067789-exon-scaffold_475-1510915933:13788..14564TCONS_00067789-exon-scaffold_475-1510915933:13788..14564Clytia hemisphaericaexon
TCONS_00067789-exon-scaffold_475-1575043694:13788..14564TCONS_00067789-exon-scaffold_475-1575043694:13788..14564Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_475supercontigscaffold_475:13788..14564 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
94.2534	104.094	109.264	114.924	40.8525	35.7434	38.6259	56.9104	107.374	121.917	257.934	127.333	70.91	78.2568	75.6163	91.5768	56.0325	53.5386	34.7921	44.9535	31.1012	30.3991	43.9724	46.0976	57.4716	46.2646	67.1466	73.9458	44.993	38.0005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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