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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067794 ID=TCONS_00067794|Name=TCONS_00067794|organism=Clytia hemisphaerica|type=transcript|length=552bp
GTTGCAGGCTGTTTTTGATATATCACGATATTGTGAAGTTGCATCTAGGA
GCGCTTAGAACGTCACAAAATCGCTAAATTCATTGAAGAAATCatGAAGA
CCATTTTTGCCGTAGCATTAATCATGTGCGTCGTCGCATATATTGAAGCT
GCTGTCGAACGTCCAAAATGTGACTACACTTATCAGCAAAACGGTCGCAA
GGGAGCTGGTCGAGCTTTCGGAACAAGCAGTGAGACATGGGTACTAACCA
ACCCTCTTGTTGAAGGGCAATTGAATTCGAAATGCAAACGAGAATGTGAA
CAAAAATCAGCATGCAAATCGTACGCATTCGAATATTCAGGTTTTACTGG
TACCTGTGAATTCTATTCCGGAACTGGATCAGTCGTCAGTCGTGGATGGA
AATTTGTTGACTGTACTGATCACCGTGGTACTAACAACAGTTTTTAGTTT
TCTGTAGAATGATTCATATCAAAGgaataaagattttattacTAAAAATA
AGAGAATGTTGTTGTTTATTCATTAAACTCCGGTTAAGGAGTCtcttaaa
at Run BLAST on NCBI protein sequence of TCONS_00067794-protein >TCONS_00067794-protein ID=TCONS_00067794-protein|Name=TCONS_00067794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MKTIFAVALIMCVVAYIEAAVERPKCDYTYQQNGRKGAGRAFGTSSETWV
LTNPLVEGQLNSKCKRECEQKSACKSYAFEYSGFTGTCEFYSGTGSVVSR
GWKFVDCTDHRGTNNSF Run BLAST on NCBI transcript from alignment at scaffold_476:22951..24597+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067794 ID=TCONS_00067794|Name=TCONS_00067794|organism=Clytia hemisphaerica|type=transcript|length=1647bp|location=Sequence derived from alignment at scaffold_476:22951..24597+ (Clytia hemisphaerica)
GTTGCAGGCTGTTTTTGATATATCACGATATTGTGAAGTTGCATCTAGGA
GCGCTTAGAACGTCACAAAATCGCTAAATTCATTGAAGAAATCGTAAGTG
TTTTTCATTAACAAACTGTAATAGGTTTTCTCTCTGCTACCCTCTTGTAG
TTACATATGTCATACGGTGTGTCCCAAAAGAGTTGCACAAGTTGTTATAT
CAAATAAAATCCTCATAACTTATGAGAAATTTGATAACTTGAATACTCAA
ATATTTCAATCCATCTCTATtttcaatcatcttgggaattgaatatcgTT
TGATTCAACAGAATTTTAATCTAATTTCTATTATTCTAAACTCAGTTTAG
ATAATGAGTTTCGAGggttttactttatataaaaatatttctactTTTTT
GGTACACACTGTAGTTTTGAACTGGACAGTAAGTAAGTGGGTATACTCAT
CTGGTGGCTGTTGCTGGAGCCAGGAGTGAGGGAGtatatccccttttcta
ttcgCGCTAGACCTGAGAGTTCGAATGCTGAGGTAGaccgccacacctac
tctcagctcccatcTACTTACCACTAATCATTCGCTGAGTTAgtggtgac
cggggatcgaacccacaacccttggcATGTAAGGCGAATACTCTATTGAC
TGAGCTACTCCGCCACTACTTAACAATCACATACATAATCTCTCGCAAAT
CTAATACTAATCTAACATTTTCTGTCACAGATCAAACCTGACGACCCTGT
CTTACACACTTTATTTGGcaagggatgagctggagtttttacaagatact
tcactaattggtcatttgaagtgatagagatgacgcctTCTTtcgaaaaa
gtaataagattcttttattacatcttaacgaccaaccaaatcaaataaga
gcttgtaaaaactccagcttgtaaaaactccagcttgtcccatttGGCAA
GGCTGTCCTAGAAAGGATCTCCCTGTTGCAAAAACCTGATCCTAAACTTG
TCTGACATACTGAAAACGCAGGTATTTCTTGATTGAACTCAAAATTGAGC
CCTAGTTCCTttgttcacttttttatgattctgatagcgctcaagAAAGG
TTGTATCCATCAGTTAAACCAAAAAGCGGTACAAATGGCTCTGGATACGA
GATTGGTTGAACTGTGaattcttttatttcttttgtagatGAAGACCATT
TTTGCCGTAGCATTAATCATGTGCGTCGTCGCATATATTGAAGCTGCTGT
CGAACGTCCAAAATGTGACTACACTTATCAGCAAAACGGTCGCAAGGGAG
CTGGTCGAGCTTTCGGAACAAGCAGTGAGACATGGGTACTAACCAACCCT
CTTGTTGAAGGGCAATTGAATTCGAAATGCAAACGAGAATGTGAACAAAA
ATCAGCATGCAAATCGTACGCATTCGAATATTCAGGTTTTACTGGTACCT
GTGAATTCTATTCCGGAACTGGATCAGTCGTCAGTCGTGGATGGAAATTT
GTTGACTGTACTGATCACCGTGGTACTAACAACAGTTTTTAGTTTTCTGT
AGAATGATTCATATCAAAGgaataaagattttattacTAAAAATAAGAGA
ATGTTGTTGTTTATTCATTAAACTCCGGTTAAGGAGTCtcttaaaat Coding sequence (CDS) from alignment at scaffold_476:22951..24597+ >TCONS_00067794 ID=TCONS_00067794|Name=TCONS_00067794|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_476:22951..24597+ (Clytia hemisphaerica)
atGAAGACCATTTTTGCCGTAGCATTAATCATGTGCGTCGTCGCATATAT
TGAAGCTGCTGTCGAACGTCCAAAATGTGACTACACTTATCAGCAAAACG
GTCGCAAGGGAGCTGGTCGAGCTTTCGGAACAAGCAGTGAGACATGGGTA
CTAACCAACCCTCTTGTTGAAGGGCAATTGAATTCGAAATGCAAACGAGA
ATGTGAACAAAAATCAGCATGCAAATCGTACGCATTCGAATATTCAGGTT
TTACTGGTACCTGTGAATTCTATTCCGGAACTGGATCAGTCGTCAGTCGT
GGATGGAAATTTGTTGACTGTACTGATCACCGTGGTACTAACAACAGTTT
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067794-exon-scaffold_476-1491911889:22951..23043 | TCONS_00067794-exon-scaffold_476-1491911889:22951..23043 | Clytia hemisphaerica | exon |
| TCONS_00067794-exon-scaffold_476-1510915933:22951..23043 | TCONS_00067794-exon-scaffold_476-1510915933:22951..23043 | Clytia hemisphaerica | exon |
| TCONS_00067794-exon-scaffold_476-1575043694:22951..23043 | TCONS_00067794-exon-scaffold_476-1575043694:22951..23043 | Clytia hemisphaerica | exon |
| TCONS_00067794-exon-scaffold_476-1491911889:24139..24597 | TCONS_00067794-exon-scaffold_476-1491911889:24139..24597 | Clytia hemisphaerica | exon |
| TCONS_00067794-exon-scaffold_476-1510915933:24139..24597 | TCONS_00067794-exon-scaffold_476-1510915933:24139..24597 | Clytia hemisphaerica | exon |
| TCONS_00067794-exon-scaffold_476-1575043694:24139..24597 | TCONS_00067794-exon-scaffold_476-1575043694:24139..24597 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:22951..24597 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
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