TCONS_00067806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067806
Unique NameTCONS_00067806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067806 ID=TCONS_00067806|Name=TCONS_00067806|organism=Clytia hemisphaerica|type=transcript|length=2373bp
TATCGCTATCAGATTTCTtgagaatttcccttttttctgatAATATTAAA
ACCTAATTGATTGCAGTATTTTAAAAGGCCAATACAGTCGATGGAGAAGC
TGAAATGTGATTTACATCTTTTGAATGCTAGATAAGATGCGGTAACATGG
TTCATATACCTAGTGTcaccaaaaaatttcaattgttAAAGTAACTTTGA
AGGGAAGTCCTCCTCATTATTTTACATCAagagaaaaaaaggttttccaT
TGAATTACAGGTTTACAGTGGACTTTGGTTCTTGAGAAGCATTTGGACGC
AGTAATTGCATCACTATGACTTGAGAATCCAAATGTGAACACAACGTTGA
AACGTGTTGCCATCGACATACCTTGTCTGATGTTACCATGAAATGTGTGT
CGTGGAATATCATTGCCTTTCATCATCCCGATGGTCCGACGCATTCGAGA
CTCTGACATCCACTAATCTCATCCAAAGATAATCGAGAGATAGTGTCTTC
AAATATAGTTTACCTATCATAAAGATGACGGAGACAACAACCTAAATGAA
GAAAAGATTCAAAACATGTCAAGTTTAACCCAATCTTTAATTTGATGTTG
TGGATGATAACTGGATTTGTCTTCAAAGGAACCGCTCATTGATTACAGCT
GCATGCGGGGAAAGCATCGTTCCATCATTGCCATTACACGAAAGGCGATA
CAGTCAACCTTCTGACGGAATTGATGAGTTGACTTCCGCCTTTCAACGTC
TTTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGCACCCATCGTG
CAAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCGTGCAAGCAGC
AGCACCCATTGAGCCGCCCGCAGCACTTATCGCNTACAGTGGACTTTGGT
TCTTGAGAAGCATTTGGACGCAGTAATTGCATCACTATGACTTGAGAATC
CAAATGTGAACACAACGTTGAAACGTGTTGCCATCGACATACCTTGTCTG
ATGTTACCATGAAATGTGTGTCGTGGAATATCATTGCCTTTCATCATCCC
GATGGTCCGACGCATTCGAGACTCTGACATCCACTAATCTCATCCAAAGA
TAATCGAGAGATAGTGTCTTCAAATATAGTTTACCTATCATAAAGATGAC
GGAGACAACAACCTAAATGAAGAAAAGATTCAAAACATGTCAAGTTTAAC
CCAATCTTTAATTTGATGTTGTGGATGATAACTGGATTTGTCTTCAAAGG
AACCGCTCATTGATTACAGCTGCATGCGGGGAAAGCATCGTTCCATCATT
GCCACTACACGAAAGGCGATACAGTCAACCTTCAGACGGAATTGATGAGT
TGACTTCCGCCTTTCAACGTCTTTCAGTAAACGGCTCCCCGCCCATTGAT
CCGCCCACAGCACCCATCGTGCAAACAGCAGCACCCATTGATCCGCCCAC
AGCACCCATCGTGCAAGCAGCAGCACCCATTGAGCCGCCCGCAGCACTTA
TCGCGCAATCCACAACACCAGTTGAAAATTCATTAACAGCTAATGAGATA
ACCACAGCATTCTCTTCAACTATAAGTGACCACACTACCACAATCACCAC
CGGACACGCTTTACCCGACTTCGAATCCACCGACCTCATTGATGCTCTTG
AACAGGAATCAGCTGAAGCGATGGGCGGCACCCACGGTGGCGGTCAACCT
CTAGTGGCGGGTGCAATCACAAATGGGTTCTCCTCTAATGAGGAGTACTA
TCAATTTCTTCAGCTCATGCTGACTGCTGTCAATCAGCTGCAACAAGAAC
TCTTGATGGAAGAGCGTGCTGAACAGGCTGCAAGAGACGCACGGGCCACA
CGGGCTCTTCGTGATCTTGCTGCGAACGAAAACCGCGCTCAACCCATTCG
ACACGCTCGACGAAGAAGACGTCGCGAAGAAATGGAGGGCCTCGAGAATG
ATCCTAACGCCGCTAAACGGCGCCGAAGACTTTAAGTCTTTAAACAAAAT
GCTTCGAAGATACCCTCACGCACTCACTCCACCTTTCAAACCAACAATCT
ATTTTCTTAACAAACCCAACGTACATCCATCGTCCACTTCCCAATGCAAT
AATCCTCTTCTTGAGGCTAAATAATAAGTAACcggagaagaaagaagaaa
atccaATTCCATACCGAACGAACGAAATTCCAGGAAAACACAACAGTTGA
CTTCAATAAACTAACTTAAATCACGTGACTTCATCTCACCGATATGGTCA
GAGCAAAACCTTCCCATCGAAGCtaaaaatatatcatttataATATATCA
ATCATTTCTATTAATTTGTTCAGTTTTTGCATGATAAGTTTGAACAGTGA
AATCCCTATTATCCTTCATCAGA
Run BLAST on NCBI

transcript from alignment at scaffold_476:192184..196110+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067806 ID=TCONS_00067806|Name=TCONS_00067806|organism=Clytia hemisphaerica|type=transcript|length=3927bp|location=Sequence derived from alignment at scaffold_476:192184..196110+ (Clytia hemisphaerica)
TATCGCTATCAGATTTCTtgagaatttcccttttttctgatAATATTAAA
ACCTAATTGATTGCAGTATTTTAAAAGGCCAATACAGTCGATGGAGAAGC
TGAAATGTGATTTACATCTTTTGAATGCTAGATAAGATGCGGTAACATGG
TTCATATACCTAGTGTcaccaaaaaatttcaattgttAAAGTAACTTTGA
AGGGAAGTCCTCCTCATTATTTTACATCAagagaaaaaaaggttttccaT
TGAATTACAGGTTTACAGTGGACTTTGGTTCTTGAGAAGCATTTGGACGC
AGTAATTGCATCACTATGACTTGAGAATCCAAATGTGAACACAACGTTGA
AACGTGTTGCCATCGACATACCTTGTCTGATGTTACCATGAAATGTGTGT
CGTGGAATATCATTGCCTTTCATCATCCCGATGGTCCGACGCATTCGAGA
CTCTGACATCCACTAATCTCATCCAAAGATAATCGAGAGATAGTGTCTTC
AAATATAGTTTACCTATCATAAAGATGACGGAGACAACAACCTAAATGAA
GAAAAGATTCAAAACATGTCAAGTTTAACCCAATCTTTAATTTGATGTTG
TGGATGATAACTGGATTTGTCTTCAAAGGTAAGAATCCAAAATTCGGGTG
TTTTACTATCAGTTTTCTCTTTATATAGAATGTGTAGCCTGGATGTGAAT
CTATTGTCCAACTGACTAGGATTTTCTTTAAGTTTATTCACTTCGAGGCC
AAGCAAAACCAAACATAATTTCTGAGTCCTGATTTTGCTCAGGGTCAGGG
GGTTTCAAATTATGAATACTAGACAACAtcataaaatgacgtcacagtaT
CTCtctaaatattaaaatatttgacgtcaattatttgtCGTTCAAAATAA
TCTCTCATTTTGAAATCGACTAGTGGTCTAGTCGATTGTCCTGTCAGTAG
AATAGTATTTAATAGTAATAATTTtgcaatttctttgaaaatggaATGGT
CTGATCAAGTTCAACGTTTTCAGTGCCATtcattgaataaaaattcattt
tcttccTCTGTTTGGATTCTATACGAAGATGCAGGAAGAAGATATTCAAG
AAGGTCAGCTTTTGGACATTGTGTTTTTATTGCTGACCAAGTCTTCAAAA
ACACTTCCAACCAACAACGTCATGTCTTTGGAGGTGACACAACACGTGGA
TCAACGAGTTCCTTCAAAGCATTGGCAAACAAGAACAaatttgggtttgt
ttctgatgAATCTTCCGTTTCCTTCAGGAACCGCTCATTGATTACAGCTG
CATGCGGGGAAAGCATCGTTCCATCATTGCCATTACACGAAAGGCGATAC
AGTCAACCTTCTGACGGAATTGATGAGTTGACTTCCGCCTTTCAACGTCT
TTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGCACCCATCGTGC
AAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCGTGCAAGCAGCA
GCACCCATTGAGCCGCCCGCAGCACTTATCGCNTACAGTGGACTTTGGTT
CTTGAGAAGCATTTGGACGCAGTAATTGCATCACTATGACTTGAGAATCC
AAATGTGAACACAACGTTGAAACGTGTTGCCATCGACATACCTTGTCTGA
TGTTACCATGAAATGTGTGTCGTGGAATATCATTGCCTTTCATCATCCCG
ATGGTCCGACGCATTCGAGACTCTGACATCCACTAATCTCATCCAAAGAT
AATCGAGAGATAGTGTCTTCAAATATAGTTTACCTATCATAAAGATGACG
GAGACAACAACCTAAATGAAGAAAAGATTCAAAACATGTCAAGTTTAACC
CAATCTTTAATTTGATGTTGTGGATGATAACTGGATTTGTCTTCAAAGGT
AAGAATCCAAAATTCGGGTGTTTTACTATCAGTTTTCTCTTTATATAGAA
TGTGTAGCCTGGATGTGAATCTATTGTCCAACTGACTAGGATTTTCTTTA
AGTTTATTCACTTCGAGGCCAAGCAAAACCAAACATAATTTCTGAGTCCT
GATTTTGCTCAGGGTCAGGGGGTTTCAAATTATGAATACTAGACAACAtc
ataaaatgacgtcacagtaTCTCtctaaatattaaaatatttgacgtcaa
ttatttgtCGTTCAAAATAATCTCTCATTTTGAAATCGACTAGTGGTCTA
GTCGATTGTCCTGTCAGTAGAATAGTATTTAATAGTAATAATTTtgcaat
ttctttgaaaatggaATGGTCTGATCAAGTTCAACGTTTTCAGTGCCATt
cattgaataaaaattcattttcttcatctGTTTGGATTCTGTACGAAGAT
GCAGGAAGAAGATATTCAAGAAGGTCAGCTTTTGGACATTGTGTCTTTAT
TGCTGACCAAGTCTTCAAAAATACTTCCAACCAACAACGTCATGTCTTTG
GAGGTGACACAACACGTGGATCAACGAGTTCCTTCAAAGCATTGGCAAAC
AAGAACAAATTTGGGTTTATTTCTGATGAATCTTCCGTTTCCTTCAGGAA
CCGCTCATTGATTACAGCTGCATGCGGGGAAAGCATCGTTCCATCATTGC
CACTACACGAAAGGCGATACAGTCAACCTTCAGACGGAATTGATGAGTTG
ACTTCCGCCTTTCAACGTCTTTCAGTAAACGGCTCCCCGCCCATTGATCC
GCCCACAGCACCCATCGTGCAAACAGCAGCACCCATTGATCCGCCCACAG
CACCCATCGTGCAAGCAGCAGCACCCATTGAGCCGCCCGCAGCACTTATC
GCGCAATCCACAACACCAGTTGAAAATTCATTAACAGCTAATGAGATAAC
CACAGCATTCTCTTCAACTATAAGTGACCACACTACCACAATCACCACCG
GACACGCTTTACCCGACTTCGAATCCACCGACCTCATTGATGCTCTTGAA
CAGGAATCAGCTGAAGCGATGGGCGGCACCCACGGTGGCGGTCAACCTCT
AGTGGCGGGTGCAATCACAAATGGGTTCTCCTCTAATGAGGAGTACTATC
AATTTCTTCAGCTCATGCTGACTGCTGTCAATCAGGTGAGACATCCATTA
CAACAGTTgaaatttcctttaaaagtccTCTGGATTCAACCTGGAAAACG
TGCAGCGTTTTTGACATTccgtgtttttttatatttagatACCGGCAGGT
GCTCAAAATTGAGGGAAACTCAATTATAAATCTTTTTCGACAAAATACTC
ccgaaaatatcttttttaaccCGATTCTTTTCCCATATTTTCTCTTGTAG
GGTATTGAATTTAATCTTGTTTAAAATGATTCATTTTTCAGCTGCAACAA
GAACTCTTGATGGAAGAGCGTGCTGAACAGGCTGCAAGAGACGCACGGGC
CACACGGGCTCTTCGTGATCTTGCTGCGAACGAAAACCGCGCTCAACCCA
TTCGACACGCTCGACGAAGAAGACGTCGCGAAGAAATGGAGGGCCTCGAG
AATGATCCTAACGCCGCTAAACGGCGCCGAAGACTTTAAGTCTTTAAACA
AAATGCTTCGAAGATACCCTCACGCACTCACTCCACCTTTCAAACCAACA
ATCTATTTTCTTAACAAACCCAACGTACATCCATCGTCCACTTCCCAATG
CAATAATCCTCTTCTTGAGGCTAAATAATAAGTAACcggagaagaaagaa
gaaaatccaATTCCATACCGAACGAACGAAATTCCAGGAAAACACAACAG
TTGACTTCAATAAACTAACTTAAATCACGTGACTTCATCTCACCGATATG
GTCAGAGCAAAACCTTCCCATCGAAGCtaaaaatatatcatttataATAT
ATCAATCATTTCTATTAATTTGTTCAGTTTTTGCATGATAAGTTTGAACA
GTGAAATCCCTATTATCCTTCATCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042347XLOC_042347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067806-exon-scaffold_476-1491911889:192184..192811TCONS_00067806-exon-scaffold_476-1491911889:192184..192811Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1510915933:192184..192811TCONS_00067806-exon-scaffold_476-1510915933:192184..192811Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1575043694:192184..192811TCONS_00067806-exon-scaffold_476-1575043694:192184..192811Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1491911889:193461..194081TCONS_00067806-exon-scaffold_476-1491911889:193461..194081Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1510915933:193461..194081TCONS_00067806-exon-scaffold_476-1510915933:193461..194081Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1575043694:193461..194081TCONS_00067806-exon-scaffold_476-1575043694:193461..194081Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1491911889:194731..195268TCONS_00067806-exon-scaffold_476-1491911889:194731..195268Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1510915933:194731..195268TCONS_00067806-exon-scaffold_476-1510915933:194731..195268Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1575043694:194731..195268TCONS_00067806-exon-scaffold_476-1575043694:194731..195268Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1491911889:195525..196110TCONS_00067806-exon-scaffold_476-1491911889:195525..196110Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1510915933:195525..196110TCONS_00067806-exon-scaffold_476-1510915933:195525..196110Clytia hemisphaericaexon
TCONS_00067806-exon-scaffold_476-1575043694:195525..196110TCONS_00067806-exon-scaffold_476-1575043694:195525..196110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:192184..196110 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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