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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067820 ID=TCONS_00067820|Name=TCONS_00067820|organism=Clytia hemisphaerica|type=transcript|length=2015bp
GTTGaaacgaagaaaaaattaaacaacaaaatACTCATAAAACCATTTCG
ACTTTTAGAAGGAAAGGAAGAAATTTGGGATTGATTTTTTGAAGcagaaa
atcacaaaatggtTTTTAGCAGTAACCACAGAGAGAATTACAAATCTAAA
ATAGcATCTGCGTTACCAAAGCCTTCAACCACTTTAACAACAAAACCAGC
TATCAAATCGCTAACATATCCACCCTCATCCAGTCGTCATCAACAAAGTA
ATCGACCATCATCCAACATGAAAATGAACACGCTCCGTTTCGTCACACCG
AACGGTCACGCGTTCAAAATCAATGCCAGAAATTGAGAAGAAGATAGGGA
TTTGGTTATTAAAAGACGCGACAATAAAACCCGGAAATGATGAAAGATCA
GGACCTTTCAAGCtggcaaacaacgttgtttcaacgtttgtcTAATGTTA
acaacgtcgaaacaacgttgtgtagaAGCTGGGTTTTATGACCAGTTTAT
GATGATATCAATGACATCAATGTTAAGGTCCCGACCCAGTCAATAATAAT
ACTATAGTCAAGCGTCGGCACACTACAAACCTGGTAATCCAGGCTCAAAA
CCTCACATCTGCCCTTCCAATGTTTCGTTCAATTAGATAGCAGAGTCGAC
ATGCTGTGGATCTCATGAAAATCGAAAGACTTCAAATGAtccaaaattta
caaatatcGACTTTACAGAAAATGACAAGTCATTCAATTCTCTATGTATT
GATCTATGTTTAATTTTCGAACCGATTGCTAAACCAGGACTCGCACATTG
TACCTAATCAAATGCTTTGTCTTCGAACTGGTAAACAACGTTGCTTTCAA
CATTATTGATGGTCATTTATCGGTTGAGTTGGCGATGGACTCTGTTTACA
ACGTCTCAAACATAGAGACTTTTAGATTTAACCTCTCAATGAGGTCACTC
GTTCCCTCAAAATCTTAAATGATTGTGTAGAGTTATTGAAATTAGTAAGA
AAGTATAAAGGGCTCTTTCAGAAAATGTTTGTATATGGGGggggatatag
tgtccggggggtagtgaaaaatctacaaagttTGCCTCCTCCGGGAGGTA
AACTTGCTCTGGGGTAactttgctctgtttgagggtaattttaagtgtcc
agggggtcaacgtTTGTCCGGgaggttagacctgctgtccggggaaTCGA
Aaatcacaatgtccgggggggggggaaatttccaaaaaatgttatatcat
acaccccctatattctaatttttttctggaaaagcccaaaatagcaaaat
agatttttattattttgtattttactattttataaTTCTGTTTCACAAAC
CAGACGAGGCCCCTATAAAGACTTGCTCCCTCCAGTCAAGAAAGTACTTC
ATCACAACTGGAATACAACACTAAAACCAAGATACGACTATATTGTATNT
ATTTTGtattttactattttataaTTCTGTTTCACAAACCAGACGAGGCC
CCTATAAAGACTTGCTCCCTCCAGTCAAGAAAGTACTTCATCACAACTGG
AATACAACATTGAAACCAAGATACGACTATATTGTATATACTTTTATGAC
TTGTCTACTATATACTTCAATgcatcttgggaattgaatacCTGTTGATT
GAACAGAGAACTGTAATctcatttcaattattttaagcctagataatgag
ttttgaagatttcactttatatgaaaaaatttcagctttttttgggacac
actgtattaaagagacataaaagtactggcgaaatttgtaaacacaCCGT
ACGCAGCGGGatacgaaatcaaaacaaatgtcacatgttaaaatagaaaa
tcaaaacaaatatggctgattttgattgtttcaattgttttataagtttg
ttttggacacgtgattttaattgatctctttaatgacacgtggtttgcac
aatgtttacattttactacttttatgtccctttaaaggaAACCATATTAC
ACCATTGTATTATct Run BLAST on NCBI transcript from alignment at scaffold_476:14316..17016- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067820 ID=TCONS_00067820|Name=TCONS_00067820|organism=Clytia hemisphaerica|type=transcript|length=2701bp|location=Sequence derived from alignment at scaffold_476:14316..17016- (Clytia hemisphaerica)
GTTGAAACGAAGAAAAAATTAAACAACAAAATACTCATAAAACCATTTCG
ACTTTTAGAAGGAAAGGAAGAAATTTGGGATTGATTTTTTGAAGCAGAAA
ATCACAAAATGGTTTTTAGCAGTAACCACAGAGAGAATTACAAATCTAAA
ATAGGTAAATCACTTTTTTCTTACTTTTTATTCCCAGGGGAGAGGGGCCA
CTGAAGGTTAAACGACTTCTGTACCGTATTTGGAGCCCTTAAGGGTCCCT
GTCCAAGCTTCCTAAAGTTCACCGTAAGGGTTGAAATGAGCAGATGTGAG
AAAAAGTGTACTCTAAAGGCTTGGGAACACGAGAAGTTTTTTTTTGCATT
GGTGCAATGCAACATGCTCCATCACACCAACCTGAAACGCGTTCTCGTGT
CTCCACCCCATTTTTCTTTCTACCAATCCTACTTTTGTCCCATGTCTTTT
GGGTATTTCCCTCACTTTTTGGTTGGTGGGGTGGAACATGTTGCATTGCA
CCAACGCGAAAAAAACTTCTCGTGTCCCCAAGCCCTAATCAAGGGTGTAG
AATTGATCTGATCAATCTGACCAATTTCGGGTTGCACGTCCGGTCGTTTT
TGAATCGAGTTCCCCCGGGATTTTATTCTTTCATAAGGCATCGTATATTC
TTTATTTTTTAGATTGTAATACCTTGAATCGGTCAAATCATTAAGTCTTA
ATCCGTTCTCGAAGCCACGATAAACTCCCAATATGAATATCACCGGGTCG
ATAAACGCAAACTTATTTAGATTAAATTAGAAGCTCTTTTTATTTATCCC
CTAACTTTGAAAATACATACTCTTATTTTGTCATTTTCAGCATCTGCGTT
ACCAAAGCCTTCAACCACTTTAACAACAAAACCAGCTATCAAATCGCTAA
CATATCCACCCTCATCCAGTCGTCATCAACAAAGTAATCGACCATCATCC
AACATGAAAATGAACACGCTCCGTTTCGTCACACCGAACGGTCACGCGTT
CAAAATCAATGCCAGAAATTGAGAAGAAGATAGGGATTTGGTTATTAAAA
GACGCGACAATAAAACCCGGAAATGATGAAAGATCAGGACCTTTCAAGCT
GGCAAACAACGTTGTTTCAACGTTTGTCTAATGTTAACAACGTCGAAACA
ACGTTGTGTAGAAGCTGGGTTTTATGACCAGTTTATGATGATATCAATGA
CATCAATGTTAAGGTCCCGACCCAGTCAATAATAATACTATAGTCAAGCG
TCGGCACACTACAAACCTGGTAATCCAGGCTCAAAACCTCACATCTGCCC
TTCCAATGTTTCGTTCAATTAGATAGCAGAGTCGACATGCTGTGGATCTC
ATGAAAATCGAAAGACTTCAAATGATCCAAAATTTACAAATATCGACTTT
ACAGAAAATGACAAGTCATTCAATTCTCTATGTATTGATCTATGTTTAAT
TTTCGAACCGATTGCTAAACCAGGACTCGCACATTGTACCTAATCAAATG
CTTTGTCTTCGAACTGGTAAACAACGTTGCTTTCAACATTATTGATGGTC
ATTTATCGGTTGAGTTGGCGATGGACTCTGTTTACAACGTCTCAAACATA
GAGACTTTTAGATTTAACCTCTCAATGAGGTCACTCGTTCCCTCAAAATC
TTAAATGATTGTGTAGAGTTATTGAAATTAGTAAGAAAGTATAAAGGGCT
CTTTCAGAAAATGTTTGTATATGGGGGGGGATATAGTGTCCGGGGGGTAG
TGAAAAATCTACAAAGTTTGCCTCCTCCGGGAGGTAAACTTGCTCTGGGG
TAACTTTGCTCTGTTTGAGGGTAATTTTAAGTGTCCAGGGGGTCAACGTT
TGTCCGGGAGGTTAGACCTGCTGTCCGGGGAATCGAAAATCACAATGTCC
GGGGGGGGGGGAAATTTCCAAAAAATGTTATATCATACACCCCCTATATT
CTAATTTTTTTCTGGAAAAGCCCAAAATAGCAAAATAGATTTTTATTATT
TTGTATTTTACTATTTTATAATTCTGTTTCACAAACCAGACGAGGCCCCT
ATAAAGACTTGCTCCCTCCAGTCAAGAAAGTACTTCATCACAACTGGAAT
ACAACACTAAAACCAAGATACGACTATATTGTATNTATTTTGTATTTTAC
TATTTTATAATTCTGTTTCACAAACCAGACGAGGCCCCTATAAAGACTTG
CTCCCTCCAGTCAAGAAAGTACTTCATCACAACTGGAATACAACATTGAA
ACCAAGATACGACTATATTGTATATACTTTTATGACTTGTCTACTATATA
CTTCAATGCATCTTGGGAATTGAATACCTGTTGATTGAACAGAGAACTGT
AATCTCATTTCAATTATTTTAAGCCTAGATAATGAGTTTTGAAGATTTCA
CTTTATATGAAAAAATTTCAGCTTTTTTTGGGACACACTGTATTAAAGAG
ACATAAAAGTACTGGCGAAATTTGTAAACACACCGTACGCAGCGGGATAC
GAAATCAAAACAAATGTCACATGTTAAAATAGAAAATCAAAACAAATATG
GCTGATTTTGATTGTTTCAATTGTTTTATAAGTTTGTTTTGGACACGTGA
TTTTAATTGATCTCTTTAATGACACGTGGTTTGCACAATGTTTACATTTT
ACTACTTTTATGTCCCTTTAAAGGAAACCATATTACACCATTGTATTATC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067820-exon-scaffold_476-1575043694:16863..17016 | TCONS_00067820-exon-scaffold_476-1575043694:16863..17016 | Clytia hemisphaerica | exon |
| TCONS_00067820-exon-scaffold_476-1575043694:14316..16176 | TCONS_00067820-exon-scaffold_476-1575043694:14316..16176 | Clytia hemisphaerica | exon |
| TCONS_00067820-exon-scaffold_476-1510915933:16863..17016 | TCONS_00067820-exon-scaffold_476-1510915933:16863..17016 | Clytia hemisphaerica | exon |
| TCONS_00067820-exon-scaffold_476-1510915933:14316..16176 | TCONS_00067820-exon-scaffold_476-1510915933:14316..16176 | Clytia hemisphaerica | exon |
| TCONS_00067820-exon-scaffold_476-1491911889:16863..17016 | TCONS_00067820-exon-scaffold_476-1491911889:16863..17016 | Clytia hemisphaerica | exon |
| TCONS_00067820-exon-scaffold_476-1491911889:14316..16176 | TCONS_00067820-exon-scaffold_476-1491911889:14316..16176 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:14316..17016 - |
Blast
The following BLAST results are available for this feature:
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