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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067821 ID=TCONS_00067821|Name=TCONS_00067821|organism=Clytia hemisphaerica|type=transcript|length=1547bpRun BLAST on NCBI protein sequence of TCONS_00067821-protein >TCONS_00067821-protein ID=TCONS_00067821-protein|Name=TCONS_00067821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp MARDTWGQDYRDVEEFAQEIMELINERNSQSRIGGSGSAKIQSLIRTKLQRun BLAST on NCBI transcript from alignment at scaffold_476:50097..63464- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067821 ID=TCONS_00067821|Name=TCONS_00067821|organism=Clytia hemisphaerica|type=transcript|length=13368bp|location=Sequence derived from alignment at scaffold_476:50097..63464- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_476:50097..63464- >TCONS_00067821 ID=TCONS_00067821|Name=TCONS_00067821|organism=Clytia hemisphaerica|type=CDS|length=6561bp|location=Sequence derived from alignment at scaffold_476:50097..63464- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00067821 vs. Swiss-Prot (Human)
Match: STX8 (Syntaxin-8 OS=Homo sapiens GN=STX8 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.156e-23 Identity = 81/223 (36.32%), Postives = 115/223 (51.57%), Query Frame = 3
Query: 84 MARDTWGQDYRDVEEFAQEIMELINERNSQSRIGGSGSAKIQSLIRTKLQNFSQEIEKLKKQLAR--SRNSITPQEADRRQQQIYKLVSREKQLNEAFKPQXXXXXXXXXXXXXLLNEGFDVEXXXXXXXXXXXXXXTFDDENLTPDGYQQRQDQVIREQDKGLDALHAVIQRQKQMGHAIGDEVDHQNDLIDDINDHVDKTDQKLIRTEAKLQKTTKKAGTC 746
MA D W Y + AQEI E I +RN R G + K+ IR LQN ++I LK L R S + IT E DRRQ + LV+RE+ L +FK +G L+ E G + L D +Q+Q ++I+EQD GLDAL ++I RQKQMG IG+E+D QN++IDD+ + V+ TD+KL ++ +K+ +C
Sbjct: 1 MAPDPWFSTYDSTCQIAQEIAEKIQQRNQYER-KGEKAPKLTVTIRALLQNLKEKIALLKDLLLRAVSTHQITQLEGDRRQNLLDDLVTRERLLLASFKNEGAEPD--------LIRSSLMSEEAKRGAPNPWLFEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRNETRRVNMVDRKSASC 214 The following BLAST results are available for this feature:
BLAST of TCONS_00067821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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