TCONS_00067844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067844
Unique NameTCONS_00067844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067844 ID=TCONS_00067844|Name=TCONS_00067844|organism=Clytia hemisphaerica|type=transcript|length=588bp
CTGAGCTAGTGAGGTGTCAGGCagacttcatttttcttcaagaAACCCAT
CATGTTGGCACAGACAAGTGGGAAAACCGGTGGCCTAAAGAGAAATCCTT
TTGGTCAGATGGGACTATTTTCTCACGTGGATGTGCAATTTTGCTGGGTC
CCAAAATTAAccaaaaaattctttctcaagAACGAGATGCACAGGGTAGA
TAcgtgtttttaaaactttcccTTCAGGGGTGTATTAAACTCAATCTAAC
CTGTATATATGCACCTGATAATCCCATGAAAAGGGTGGACTTCTTCGAGA
ATCTAAGATCCCGCTTAACCATCTTTTGTGGGAACGACCCCTTGATTTTA
GGGGGAGATTATAACTTTGTGGAAGACCTCTTTCGTGACAGAGTGGGAGG
GGATGTGACCCTACCCCAGTTCACCAGGGGGAGGGAAGAGTTTCAAGAGA
TTACACGTTCCTTTGACCTCCAGGATCAGTTTTTAACTGTGGGAAAGAAA
AGGAACGAGTACACCTGGAGAAACTCAAAAGGCACTACCAGGAGTAGGTT
GGAACGTTTTTACGTCAGCACCCGTGGGGCCATTCATC
Run BLAST on NCBI

protein sequence of TCONS_00067844-protein

>TCONS_00067844-protein ID=TCONS_00067844-protein|Name=TCONS_00067844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
ELVRCQADFIFLQETHHVGTDKWENRWPKEKSFWSDGTIFSRGCAILLGP
KINQKILSQERDAQGRYVFLKLSLQGCIKLNLTCIYAPDNPMKRVDFFEN
LRSRLTIFCGNDPLILGGDYNFVEDLFRDRVGGDVTLPQFTRGREEFQEI
TRSFDLQDQFLTVGKKRNEYTWRNSKGTTRSRLERFYVSTRGAIH
Run BLAST on NCBI

transcript from alignment at scaffold_476:210633..211220

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067844 ID=TCONS_00067844|Name=TCONS_00067844|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at scaffold_476:210633..211220 (Clytia hemisphaerica)
GATGAATGGCCCCACGGGTGCTGACGTAAAAACGTTCCAACCTACTCCTG
GTAGTGCCTTTTGAGTTTCTCCAGGTGTACTCGTTCCTTTTCTTTCCCAC
AGTTAAAAACTGATCCTGGAGGTCAAAGGAACGTGTAATCTCTTGAAACT
CTTCCCTCCCCCTGGTGAACTGGGGTAGGGTCACATCCCCTCCCACTCTG
TCACGAAAGAGGTCTTCCACAAAGTTATAATCTCCCCCTAAAATCAAGGG
GTCGTTCCCACAAAAGATGGTTAAGCGGGATCTTAGATTCTCGAAGAAGT
CCACCCTTTTCATGGGATTATCAGGTGCATATATACAGGTTAGATTGAGT
TTAATACACCCCTGAAgggaaagttttaaaaacacgTATCTACCCTGTGC
ATCTCGTTcttgagaaagaattttttggTTAATTTTGGGACCCAGCAAAA
TTGCACATCCACGTGAGAAAATAGTCCCATCTGACCAAAAGGATTTCTCT
TTAGGCCACCGGTTTTCCCACTTGTCTGTGCCAACATGATGGGTTtcttg
aagaaaaatgaagtctGCCTGACACCTCACTAGCTCAG

Coding sequence (CDS) from alignment at scaffold_476:210633..211220

>TCONS_00067844 ID=TCONS_00067844|Name=TCONS_00067844|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_476:210633..211220 (Clytia hemisphaerica)
ATGAATGGCCCCACGGGTGCTGACGTAAAAACGTTCCAACCTACTCCTGG
TAGTGCCTTTTGAGTTTCTCCAGGTGTACTCGTTCCTTTTCTTTCCCACA
GTTAAAAACTGATCCTGGAGGTCAAAGGAACGTGTAATCTCTTGAAACTC
TTCCCTCCCCCTGGTGAACTGGGGTAGGGTCACATCCCCTCCCACTCTGT
CACGAAAGAGGTCTTCCACAAAGTTATAATCTCCCCCTAAAATCAAGGGG
TCGTTCCCACAAAAGATGGTTAAGCGGGATCTTAGATTCTCGAAGAAGTC
CACCCTTTTCATGGGATTATCAGGTGCATATATACAGGTTAGATTGAGTT
TAATACACCCCTGAAgggaaagttttaaaaacacgTATCTACCCTGTGCA
TCTCGTTcttgagaaagaattttttggTTAATTTTGGGACCCAGCAAAAT
TGCACATCCACGTGAGAAAATAGTCCCATCTGACCAAAAGGATTTCTCTT
TAGGCCACCGGTTTTCCCACTTGTCTGTGCCAACATGATGGGTTtcttga
agaaaaatgaagtctGCCTGACACCTCACTAGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042369XLOC_042369Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067844-proteinTCONS_00067844-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067844-exon-scaffold_476-1491911889:210633..211220TCONS_00067844-exon-scaffold_476-1491911889:210633..211220Clytia hemisphaericaexon
TCONS_00067844-exon-scaffold_476-1510915933:210633..211220TCONS_00067844-exon-scaffold_476-1510915933:210633..211220Clytia hemisphaericaexon
TCONS_00067844-exon-scaffold_476-1575043694:210633..211220TCONS_00067844-exon-scaffold_476-1575043694:210633..211220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:210633..211220 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.355512	0.154114	0.789691	0.259358	0	0	0	0.244177	0	0	0.0948383	0	0.157886	0.158977	0.0785201	0	0.0751197	0.288547	0.0995082	0	0	0	0	0	0	0	0.184028	0.486588	0.129533	0.359585
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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