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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067878 ID=TCONS_00067878|Name=TCONS_00067878|organism=Clytia hemisphaerica|type=transcript|length=1777bp
GAAGTTAGCGTCATTGGTGTCACGTTTGGATCACGGAAAACTTCCGATGA
AAATTCTGTTGGTTTGGTTGAGGCAGGTGTTTCAATCCTTCAGCAAGCTT
CACACCATCTGGTGGACTCCAAATTTAGATTTGTGGATGATCAAATCAAG
AATAccaaaaaatcaatgaaacGTAGACGAAGATTTCATTATGGTTGTTG
TGCTGTCTTTATACTTCTTCTTGCTTTGCTGTGTATCCTTTTTTGGCAGC
TTTATTACCCTGGAACAGCTTATCGCCATTGGAAATGTAAACAGGGCCAT
ACGAAGCCTTTACAACGTGCTCGCATTATCCGGTATAAATCAAAAAAGGA
CCAAACTGTGAGGATAACAGCTCACGGAATAAGATTCGAATTTAAAGACA
TCCTCCGTAAAATTGAATTATCAGAAGAAGATTCTTTTCAAGAACCCATC
AGCGGAATCGTTGATGGAGTTGATGTTGGCGAAGCCAGATATTATCTTGG
ATTCTACCGGTGTGCGTATGGAGATAGCTTTGCTTACAGAAAGACTTCAG
GAGGGACACAATACACTGGACCAAGAATGTTTGCTATTGATGAGAAATGT
GAAAATGCTTTTTGGCTGGGACCTGATAGTTGGGTACGGTATGTGTCACC
ACAGGCAATACAATGTGATGAAAAGATACATTTTCCCTAGCTTGAAAATG
GTCTAGTTTGATAGTTAtgtaaattttcaatgtttttttgcGAGCTAGGT
TGTAAGTAGATATCACAAGGCCTCTCATTGGATAATTCAATTTATTTGGT
CAATATGAGTGATGTTTAACGGCGAAGCACTACTAGATGGGGCAGACGGG
GCCGAAACAAAATTATGCATATACAACTCACAGTTTGGTGCCAGTAATTT
GTTTGATTCAGGAAATTCTCTCGTCTTCCCCGCTTACACTGATATACTAG
TTGTTTGATTTGATTGAATAAATTGTCGATCCACTGTCTTTTACTCTTTT
GTAAAGATGGTGTGCGGTTTTGCTTTTACTTCGTCGGCTTGTGAAAGTTC
CACTAGGTGGAGTGGTGGTTTTGTATAAGATATCTGAGCACGATGCCAAT
TCCAATATTACCTCaagggaaagaaattttggcggaaagaaatttNGAAT
TTGGTGAATTGTCTAAAAATTTcgccaaatttgccaaatttaaatttata
ggtcgttcgccaaaattaattcacgccaaatttataaatttattaaatcg
ccaaaataaattccgccaaattgcaccaaaattggcaaaaatttcttctc
ttaaggtagtATTCACCGAAGTGATTAGTGAACTGAGTTCGAGTTTAACT
TTCCATCTCCAATAATTTCCCGTATACTTGTGTTTCAAAGAAAGCCCAAG
ctaatcaaatttcagaaaacactAAAACTTTTCCCACATCATATGACAAC
AATCAAATGACCAATGAATTTTAACAACCCAAAATCCTGAAAgacaaaga
caaaagacaaaacaaaccaaatttcACTAATTTTTAATAGATTaagtaaa
ttttgtaaaaatatttttagtatattttttaatAGTATTTGGATTTAAAT
ATTCACAGttttatattcctttttttACTATTTATATTGTGTAGTACTCC
AAATTTTAGAGGGAGTGATTTTGTAAAAAACGGATAGAGGATAAAATATT
ATTAGGTATTATCAATGAAGCCTGTGGGTGTTCTaatctaaactttttga
gttttaagccaaagaatgttcttaacc Run BLAST on NCBI transcript from alignment at scaffold_477:110347..115136+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067878 ID=TCONS_00067878|Name=TCONS_00067878|organism=Clytia hemisphaerica|type=transcript|length=4790bp|location=Sequence derived from alignment at scaffold_477:110347..115136+ (Clytia hemisphaerica)
GAAGTTAGCGTCATTGGTGTCACGTTTGGATCACGGAAAACTTCCGATGA
AAATTCTGTAAGTATGGTGATACAATAATTATGGGTAATCAGAAGGTTTT
CGTACAAATAGTGGGgaaaacatcctccacattacccgatgatgggagaa
gaaactctcgaaacgtagccaaacgtaaatctcgtgatccaagctacgat
aaacttccaatatgaatatcactgggtcgatttagaagtctctttaactc
gaacctatACAACGAATCTACAATAGTATTCCTGTCATCCTGTGTAACTC
TGTGTTCCTCGTGTGGGTTCGATTAATATCCatgaaaatatttcctttcc
atCTTTGAATATCAATGTGATTGAGAGTAATGAGACATGAACGATAATTT
TTTACAGTTTGTCTCCACACCTTAATATCACAGAAAGCTAAACTGCGAGT
TTTGAgttcttaagattttctttatttttaccattttgtgagtattttat
cgatttttctaagaaaataggtgttttagggtccgcaaagccttaaaatg
ttcttaacttgttcttaacattttggccatcgaagccttatgttcttata
tagtttgttcttataaagaaatgtgCACGTGATGAAAAGCTTTTGTTCCC
ATCATCTTTGAAGAAATCTTTTGGGCAAAGACTCCTTGAAAAGAGAGTAA
CGCCTCGATACCAATATCACATTTAttatgaagaaattttttgatttctt
ctcAGGTTGGTTTGGTTGAGGCAGGTGTTTCAATCCTTCAGCAAGCTTCA
CACCATCTGGTGGACTCCAAATTTAGATTTGTGGATGATCAAATCAAGAA
TAccaaaaaatcaatgaaacGTAGACGAAGATGTGAGAAATATTCATGAT
ATCtttctgttcctctaaagaatcctgaattataacacgcatgcgtaatt
tgtcgttcttttaaccatatgtacaatcatggtcgaaatttattgagaat
taagcttggttcttcatttttcgaaatttggagttcgcgcgaaaaactca
attttgggccatctctcaaATGTAATCGGATATTTCAGGTTTATAGACCT
CTAGCCTATATTATGAGCCTATTTGGATCATTTTTGatcttttggatcct
cagatcctaaggtccaaAGTCTTAATTCTCATGTTAAAGCTCagggttaa
aactctacccttccaacctacttaatagcacttacaaatcgattgtggtt
tcaaaacttcccgatgaatttcccttttttctcaaatataacGACCATGA
ATGTAGTTAATGATTCTGTTTTTCTACACTCAACTGGTACcactggtaca
caacgttgtttcaacgtctatataataacgttagaaaaacgcTCAATTAA
CGTAATGTGTCAGCTGGGCATCAAGTCAGctatttattttaaagattgtg
TGTGGACGATGAGTCTCAAAACAAAATACCTTAAAAAAATGGTTCAGCTA
AATTGCCATAATTATATTCTTTTCCAGTTCATTATGGTTGTTGTGCTGTC
TTTATACTTCTTCTTGCTTTGCTGTGTATCCTTTTTTGGCAGCTTTATTA
CCCTGGAACAGCTTATCGCCATTGGAAATGTAAACAGGGCCATACGAAGC
CTTTACAACGTGCTCGCATTATCCGGTATAAATCAAAAAAGGACCAAACT
GTGGTAAGAAGTCTtagaccacgttcacacgctacgTTTCCCTTTCaatc
cgaaacgaaatgaagccatttcaTTGGTCGAATTCAAATTTTACGTCatt
tttaaccaatagaatgacttGACTTGaattcgtttcggagcgaaatgGAA
CCGCTACGTGCGAACATAGTCTTAGCTGGGTTGGGTTGATGTGAATTCTT
TTCCCGTCGACGAACGAAGAACTATGCCAGCGGTTGaatatctttaaaac
ttttACTTTCGATTTTCCGGAGGCCGTCTTACAGGTCTTCAGCCGTTAGA
GACTGGCCGAAAATTATATctgtaggtcttcggccgccgACGTAGGTCTT
CGTCTGttgacagaaaaaaaaatccgTTGATAGGGCGTAGGGTTACAGTT
TATTCTAAGaatattttgtagattttctttCTTAATTTTGAGAATCAGGT
CCTGCGGACCATGGTGGCTGGTATGGTGGCTGTTGTGTATTTTTGAGAAG
GGCTGTAAATTTCGAAAGCAACTGTATCAGAAACTATTCGAAGCTTTCAT
CTCGCCAAATATAATTTTGACTGCCTCCATCTCCTTATAAAACCATGCTT
TTGTTTCCTTTTGGATTTAACTCTGGTGCGTGAAGCTTACCATTCTTTGA
GTTTCTGAGGACTTAGATAAATCTAAGCCAAAGTTTGGTCTTTAGAAAGA
CTAATttagacacccccttctcacttACCCACTgagaacccttcccactg
gaagtaatggcaaaaatatcgtcccaCTTACGATAACActataatttttg
tccccactgaaaataatcagataagcaaattctcactgcaaattattgtg
ctattttttccatccctacTGAATTCTCTGGtcagaaaacaatggaattc
aaatccccagccataagaacacataggaatatcaatccccatcgaggtTT
GGTCCGCtatttatccccactggctgctaaaatcccactgggtctgtgag
aaggtggTATATTTAGGACATCATAATGTTTTGTTATGACTCTTgatgat
aaagaaaaaatacacgctcgtattcatgatattcatgacgtaatgttttc
tacggaaagaccccagtTTTAGCATgcagtggcaaatttaaacttgacaa
aaattgtataaaatttgctactactggcaaaaaccggggtttttccgtag
aaaacattacgtcatgagtATCATgtattaacaaaataataaatttcaGA
GGATAACAGCTCACGGAATAAGATTCGAATTTAAAGACATCCTCCGTAAA
ATTGAATTATCAGAAGAAGATTCTTTTCAAGAACCCATCAGCGGAATCGT
TGATGGAGTTGATGTTGGCGGTAAGTttttttaaggccggtctcaacttt
cgcgcgaaatgggcgacagtttttttcttgaccttttttgccagaaaaaa
agattacgtcataaaagagtttcgcgcgaacaaaaaaaagttgaaggaag
ttctacttttttcatccgatacgtcaattttgaccataatggtattgctt
catttttcaaccgaccaatgaccttacaaagtttttttcgctcatgtcgc
tcgaaagtggagaccggcctttacatTCCCTTTCTTTAAACCGCTAAGAT
TTCTGACTCATTGAACCCCAATAATGAACAATAAAGTTTTAGCAAAACCC
ACATTTTGAACAAAATAGTTGCTTGGATTTTTTTGAACTCGCTTTCAAAT
TTCACAGTGAACTTCAATAAAttctaaattcttatttcttataGAAGCCA
GATATTATCTTGGATTCTACCGGTGTGCGTATGGAGATAGCTTTGCTTAC
AGAAAGACTTCAGGAGGGACACAATACACTGGACCAAGAATGTTTGCTAT
TGATGAGAAATGTGAAAATGCTTTTTGGCTGGGACCTGATAGTTGGGTAC
GGTATGTGTCACCACAGGCAATACAATGTGATGAAAAGATACATTTTCCC
TAGCTTGAAAATGGTCTAGTTTGATAGTTAtgtaaattttcaatgttttt
ttgcGAGCTAGGTTGTAAGTAGATATCACAAGGCCTCTCATTGGATAATT
CAATTTATTTGGTCAATATGAGTGATGTTTAACGGCGAAGCACTACTAGA
TGGGGCAGACGGGGCCGAAACAAAATTATGCATATACAACTCACAGTTTG
GTGCCAGTAATTTGTTTGATTCAGGAAATTCTCTCGTCTTCCCCGCTTAC
ACTGATATACTAGTTGTTTGATTTGATTGAATAAATTGTCGATCCACTGT
CTTTTACTCTTTTGTAAAGATGGTGTGCGGTTTTGCTTTTACTTCGTCGG
CTTGTGAAAGTTCCACTAGGTGGAGTGGTGGTTTTGTATAAGATATCTGA
GCACGATGCCAATTCCAATATTACCTCaagggaaagaaattttggcggaa
agaaatttNGAATTTGGTGAATTGTCTAAAAATTTcgccaaatttgccaa
atttaaatttataggtcgttcgccaaaattaattcacgccaaatttataa
atttattaaatcgccaaaataaattccgccaaattgcaccaaaattggca
aaaatttcttctcttaaggtagtATTCACCGAAGTGATTAGTGAACTGAG
TTCGAGTTTAACTTTCCATCTCCAATAATTTCCCGTATACTTGTGTTTCA
AAGAAAGCCCAAGctaatcaaatttcagaaaacactAAAACTTTTCCCAC
ATCATATGACAACAATCAAATGACCAATGAATTTTAACAACCCAAAATCC
TGAAAgacaaagacaaaagacaaaacaaaccaaatttcACTAATTTTTAA
TAGATTaagtaaattttgtaaaaatatttttagtatattttttaatAGTA
TTTGGATTTAAATATTCACAGttttatattcctttttttACTATTTATAT
TGTGTAGTACTCCAAATTTTAGAGGGAGTGATTTTGTAAAAAACGGATAG
AGGATAAAATATTATTAGGTATTATCAATGAAGCCTGTGGGTGTTCTaat
ctaaactttttgagttttaagccaaagaatgttcttaacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067878-exon-scaffold_477-1491911889:110347..110403 | TCONS_00067878-exon-scaffold_477-1491911889:110347..110403 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1510915933:110347..110403 | TCONS_00067878-exon-scaffold_477-1510915933:110347..110403 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1575043694:110347..110403 | TCONS_00067878-exon-scaffold_477-1575043694:110347..110403 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1491911889:111102..111228 | TCONS_00067878-exon-scaffold_477-1491911889:111102..111228 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1510915933:111102..111228 | TCONS_00067878-exon-scaffold_477-1510915933:111102..111228 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1575043694:111102..111228 | TCONS_00067878-exon-scaffold_477-1575043694:111102..111228 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1491911889:111874..112049 | TCONS_00067878-exon-scaffold_477-1491911889:111874..112049 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1510915933:111874..112049 | TCONS_00067878-exon-scaffold_477-1510915933:111874..112049 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1575043694:111874..112049 | TCONS_00067878-exon-scaffold_477-1575043694:111874..112049 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1491911889:113296..113416 | TCONS_00067878-exon-scaffold_477-1491911889:113296..113416 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1510915933:113296..113416 | TCONS_00067878-exon-scaffold_477-1510915933:113296..113416 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1575043694:113296..113416 | TCONS_00067878-exon-scaffold_477-1575043694:113296..113416 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1491911889:113841..115136 | TCONS_00067878-exon-scaffold_477-1491911889:113841..115136 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1510915933:113841..115136 | TCONS_00067878-exon-scaffold_477-1510915933:113841..115136 | Clytia hemisphaerica | exon |
| TCONS_00067878-exon-scaffold_477-1575043694:113841..115136 | TCONS_00067878-exon-scaffold_477-1575043694:113841..115136 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:110347..115136 + |
Blast
The following BLAST results are available for this feature:
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