TCONS_00067883 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067883
Unique Name	TCONS_00067883
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	787

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_477:158784..166918+
coding sequence from alignment at scaffold_477:158784..166918+

transcript sequence

>TCONS_00067883 ID=TCONS_00067883|Name=TCONS_00067883|organism=Clytia hemisphaerica|type=transcript|length=787bp
GAACAATGtccatttttgtccatttccagATTTCACCAAATTACATGTTC
ATTTCACAAGCAGTATATAAGAGGTTCATACGTGGATCAACAATCATGAA
GGTTTTGGCAACGGCAACTGTACTTTTGGTTGTCTTTGTACTGCACAGTC
AAATGAACAATGCTGAAGCAGAGACATTAGGCAAAAGCTCTGGCGGTGGA
AGTAAAAAGAAGGGACCTAAAGTTACACATATAGTattttttgatatgaa
aattgGGAATAAAGAAATAGGACGTATCAGAATTGGTTTATTTGGAAAAA
CTGTGCCCAAGACTGTTGATAATTTTGCACAATTAGCAACTGGAGAGAAA
GGCTTTGGATTTAAAGGCAGCAAGTTTCATCGTGTCATCAAAGACTTTAT
GATTCAAGGTGGTGATTTTACACGTGGTGATGGTACAGGAGGACGAAGCA
TCTATGGTGATAAATTTCCCGATGAAAACTTCAAATTGAAGCATTATGGT
CCAGGATATGTTTCAATGGCAAATGCTGGCAAAGACACCAATGGATCCCA
ATTCTTTATCACCACTGTCAAAACTGGGTGGCTTGATGGAAAGCATGTCG
TATTTGGTAAAATCCTTGGTGGAATGgacgTTGTTCGGATAATTGAAAAC
ACTCCTGTTGACGGAAGCACTCCAAAAGAAGAAGTCATTGTTCACGATTC
AGGGCTCGAAACACTCGATAAACCTTTCAATGTAGAGAAAGAGGGATAAG
TGCCTCGAAAAGGTTTCTTTATTATACACGTTCTTTT

Run BLAST on NCBI

protein sequence of TCONS_00067883-protein

>TCONS_00067883-protein ID=TCONS_00067883-protein|Name=TCONS_00067883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
TMSIFVHFQISPNYMFISQAVYKRFIRGSTIMKVLATATVLLVVFVLHSQ
MNNAEAETLGKSSGGGSKKKGPKVTHIVFFDMKIGNKEIGRIRIGLFGKT
VPKTVDNFAQLATGEKGFGFKGSKFHRVIKDFMIQGGDFTRGDGTGGRSI
YGDKFPDENFKLKHYGPGYVSMANAGKDTNGSQFFITTVKTGWLDGKHVV
FGKILGGMDVVRIIENTPVDGSTPKEEVIVHDSGLETLDKPFNVEKEG

Run BLAST on NCBI

transcript from alignment at scaffold_477:158784..166918+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067883 ID=TCONS_00067883|Name=TCONS_00067883|organism=Clytia hemisphaerica|type=transcript|length=8135bp|location=Sequence derived from alignment at scaffold_477:158784..166918+ (Clytia hemisphaerica)
GAACAATGtccatttttgtccatttccagATTTCACCAAATTACATGTTC
ATTTCACAAGCAGTATATAAGAGGTTCATACGTGGATCAACAATCATGAA
GGTTTTGGCAACGGCAACTGTACTTTTGGTTGTCTTTGTACTGCACAGTC
AAATGAACAATGCTGAAGCAGAGACATTAGGCAAAAGCTCTGGCGGTGGA
AGTAAAAAGAAGGGACCTAAAGTTACACATATAGTGAGTTattaaagttt
gaatttttaaggaaaagcttGGCCTACTCCCTTCTGAGATCCCTAAAAGT
AGGAATTTAGTCAAAAGCACGAATCAGTGAATCCTCCCCGGCTCAATCTA
CCTGTTCATTAAATTGCGGTTCTGAAATAACCTCTTTTCTTCTTTGACTA
CAACTTTTTTTGTTAGTTATTCTTCCTTTTTAGCagttttatgttttgtt
ttgatttatgcTTGCTTAAACTGATTGATTGAccctttttttgtgaaaat
ttttctcAACTAAGTGCATTAGTTATCCCATTGGTTGAAACCTTGTAATA
GATGGGCAGCCTGGCCTGCTGCCCCAAAACTTATAATCTTCATAAAAAAT
TACTCTTAACCAAGTGCATTAGTTATCCCATTGGTTGAAACCTTGTAATG
GATGGGCAGCCTGGCCTGCTGCCCCAAAACTTGTAATCTTCTTGTAATTG
TAAATTTTAAGTTATGCAggcaaatattttgatttcatttgttttctgac
tccatcttttcaaatattattCATCGTTCCAGGTattttttgatatgaaa
attgGGAATAAAGAAATAGGACGTATCAGAATTGGTTTATTTGGAAAAAC
TGTGCCCAAGACTGTTGATAATTTTGCACAATTAGCAACTGGAGAGGTGA
ATATACAAACGTATTTTTCAACAATCTTTCTAGCATTTTACTAGATTTTC
AGTCCTTGTAATTTCAGATTGTTTGGACAATATCTCTATACTGATTGTct
ggaaatatttaattttcaatttcattgattttataGCAGCTTTTCTTGAA
TCCATTCAATGAAAGTTAAAGGCTtcaatgaatttttaaaattagatatt
tattttattcataGAAAGGCTTTGGATTTAAAGGCAGCAAGTTTCATCGT
GTCATCAAAGACTTTATGATTCAAGGTTTGTATGTTAAAACTTATAATAA
TCTCTCTAAAAGCTTCTTCTCCATCTTATTTTTAGTGTAATTGTgaagtt
tgttgtgaaagttgataaaatatcgaccggataaaatatcctgtttttca
agaagcGAGCGAgcgattcttttggcaaaagcgcgggaaaaaagctgata
tgcggagtgataaaatcgatttttacccttttttagcctcgtttccattc
agactttcgtcgtcgtgtgcaactgtcttaagtcccaatatggagaatta
tcgcctgtacccgactgtctgttggNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTGGGAAACGTCgctcggttcggaagcgtattgttgatcgg
accatactgccttttaacagtcaaaacaaagatggcggcaaaaataaaca
actggttgctaccgctctttcgctatttttctttggtttttatgctttaa
tgagttgaattgaatcatgatttttgtatgattgttacaagaaatggttg
atgatgaagttttcttattattccttcctgaatttgatgtttcgtttggt
tGGGCATGAGAGATTGATGCAATCTCTTCTTGAAAAACCTTAAGTTTtga
ttatgttttttttatctcgTATTTGTGTATgtttatttattcaatttttt
gtaaagAGCAGGGCAGCTTGCACTTACAGTACTCTTAGGCCTAGACCTAT
CATTACTGACCCCTTGAAATTAGGCGTTCTATGAAACGACAGCTAACTTA
ATGGATTAAAAAGGGTCATAAATTAATTCTGTTAAAATATAtgttatcat
tgttttttgCACGTTTCCTGTCATAagactttttagattttttagaaaac
agTACTGTATGGGTCTTTTCAGATGATATATGCTGCCCTATTGGCTGGAT
GTATATATAAacaattaatttctttttcgattttcactAACAGGTGGTGA
TTTTACACGTGGTGATGGTACAGGAGGTATGATGAATAAATTTATTTCAG
CTTCTTCCAAATACATGAATATCTCTGATTTGATTACCACGTGGTAGAAA
GTCGAGCGActgtcaaaataaaaatgtcttAGGAGCCATTTTCTGTAAGG
CAGGTGAtagtagaaaaatttaaattcctccatttttggatatttggtaG
ACAATAGTGAAAAACTCAGAATCCCAGAATTTCAGGTcccaaaatccata
atggcggatttacaaccaatcaaaaatttcactttttggacctacctgtg
gaggtcctataaattaacctttgtccgtccgttcgtctgtccgtctgtcc
gtctgttaccagcttttctcgagattggctcattagttttttctgatttt
tggcacaatgatgcaaaatggtaatgtccaaaatgtgacggagcccgatt
ttcgaaaaaaaatcatttccggcagaaaatgccggaaatatgccggaaaa
acgggttttttagcattttctcgagatttcatcattagttttttcagatt
ttttgcacaaagatgcgtattagcaatgcccaaaacatggcagagtctga
tttttgaggaaaaatcttttccggtcgaaaatgccggaaataagccggaa
atcgccgtttttgcagattttcattggactttttccttatatttcgttgt
tttttcacacaaaaacattattaatagcatgtccacgatcaagcatggtt
aaattttcgataaaactgatttttgcagccggaactttctaaaaatcgcc
ggaacagccgattttcgccggaaaaacggtatttcttgaatttctcgagc
tgtactttatatttttttatgaaattttgcacactgatgtaaaatgacaa
tacctaaaaagtgacggagcccgattttcgaaaaacattcttttccggcc
gaaaatcccggaaatatgccggaaaaactgtttttttttggcattttctc
gagatttatcattagttttttctggattttcattgggctttttccttata
atcggttattttttcattcaaaaacattattaatagcaatgcccaccatc
aagcatgtttcaattttcaataaaattgatttttgaagccggaactattt
aaaaatcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcggagcctgattttcgaaaaacattttttccg
gccaaaaatgccggaaatatgccggaaaaaccggtttttttacattttct
cgaattttcatctttagtcttttctgatttttttgcagaaagatgcgtat
tcgcaatgctcaaaacatggctgagttcgatttttgagaatttttttttt
ccggttgaaaatggctgaaatcgccgtttttgcagattttcattagattt
ttttccttgtaaatctatgtttttgacacaaaaacattattgataacaat
gctcaccatcaagcatgattcaattgtcaataaaactgatttttgagacc
agaactttctatttatttcttCCCTACAACCTTCCCTCTCCccttatcaa
caatcaatgatgaatttattgcgttatgcattttcgctaaacgctatatt
ttctgactgatttttttctcctcgcattgctatctaactttcatcatcag
gtagatccattcagcatctagcttgttttgcTCGTTTTCTTTGTTACAAC
TTTAAAAGGCATTTTTTCAAGTTGTAACTGAGATCACATGggattttatt
aattttcttgaAGTACCCAATTAGTGCTTCCAAATAACCCATAAAAACCC
ATGTGACCTTAAACGcgaattccataatggcggcttAAAAACGCCCCAAA
ATCCATTTCAGCCATCTTTTAAGGTGCCATTACTCAGCCCAGGActtttt
tgggccaaatttcTTTGTGGAAATGTGTTAAGCAACTTTATGACAGCAGA
TTTAAGCAATTTTGATGTATTTCTTTGCCAAGATGAAGATGGTGAGATAA
AGAAGAAATCTTATTTTACGGCTGCATTCAGGAGTGACCAAGACTATCTA
TGACTCTGGTCACAATGTGAAGTGTCATtccttttttgccaaaataatcA
CACTGTCCCTCTCTAAATCTCATTGGGAGGACTTTTTGGCAAAAGTCTCT
AATCCACAGTCCTGTTGATTTGCTGAGGAGCTCAAAGGCATCAATTTTAG
CTTTACAAGTCCTGTTGCACATGTCTCATTACGTGTTGCAGCCATTTGAA
TTTAGCATTTCTGGCCATCTTGATTTCATACTGCAGTTCCTGCTTACCAG
GCATTTGAGATCTGGAAAGTTCATCAGAGATCAAATCTATTGTGCTAAAT
AGCTCTTCACATTGCTGACACGACTCATTGTGCTCTTCACACCGTTGATG
GTTGGAGGTGAGAtggtttttgaaactttaaagcTGTAAAACTTTAAATC
CCTTGATTAGACGATAACCATGAATCTCATTGTAACTTTTTCAGTTAAAG
ATCATGAACTGAGACTTACCTAGGTTGATAAAAGAAGTCTTTTttgcgtc
aaaattgaaaaatatcactTTATTGAATGATTTTCTTGAAGCCTCTGTAC
GAAATTCActgaaaaatgacgaaaatcATGGAATCTTGGATTTATTCAAC
TCAAATGAATTGTTTGGAATAAATACTAAGTCTATTTtggaaatattgat
aaaatattttgaaagaaaattgatttccaagctgaaaaccggttttccag
cTTGAAAACAAGCCTAAAAGACGTACTTTTTTATCGGACTTAagaaaact
ttctttcctttttttctctttcataagcatgattttttcagatttgcGAC
TAATTTCGGgcaaaaccaaaaattggatCTGATAGGCAGCCTAGACTATG
TATTTTCAGAAAGCGAAATAAAACCCATGTGATCTATAAGCATAGATCAC
ATGGGTTTTATTTCGCTTTCTGAAAATACATAGTCTAGGCTATCAGatcc
aatttttggttttgcCCGAAATTAGTcgcaaatctgaaaaatttgagCCG
GATTTGCTACTTTTTGACTTTGGAGCCGCCTTTCAGGACTGCTAGAGCCC
AGtctactttaaatttttttttcaaaattgcttaaatcTGCTGTCATAAA
GTTGCTTaaatttggcccaaaaaagTCCTGGGCTGAGTAATGGCACCTTA
AAAGATGGCTGAAATGGATTTTAGAGCGTTTTTAAGCCGCCATTGTGGAA
TTTGCGTTTATAAGGTCATATGggtttttttgggttttttggaAGTACTG
ATTGGGTACTtcaagaaaattaataaaaacccATGTGATCTTAGTTGCAA
CTTGTATAAATGCCTCTTAAAGTTGTAACAAAGAAAAcgagcaaaaaaag
tgaaatttttgattGGTTGTAAATCCGCCATCATGGATTTTGGGGACCTG
AAATTTTGGGATTCTGAGTATTGCACTTTTGTCtaccaaatatccaaaaa
tggaggaattcaaatttttctaccATCAAAATTGTCCAAAACTGCCTGGt
tcttacagaaaatggctcttaataaTATTCGCTTCGttgatattattatt
attgataatttgaaacttttttaacaaattaattttaatgaaaatccgTA
AAAAAAGTAGGTGAACTATAATCAAATATCTTCACACCCTGGCATCCAAG
GAAAGTTTCAGTTTTCAAATACTGGGGCACCCTCTTCCCAGGCTTTTCCC
CCCTGATATATGATCCGACGTTGTTACTCACATCGGATTTACTTCATTCT
GTTTATCACAGGACGAAGCATCTATGGTGATAAATTTCCCGATGAAAACT
TCAAATTGAAGCATTATGGTCCAGGATATGTTTCAATGGCAAATGCTGGC
AAAGACACCAATGGATCCCAATTCTTTATCACCACTGTCAAAACTGGGTG
GCTTGATGGAAAGCATGTCGTATTTGGTAAAATCCTTGGTGGAATGGTAT
GTTTAGAATTGAATCATTTTagccctattcgtactaggggggagCTTTTT
CAGTGGTGAAACTAATGTGAACAACTCCTGAATCGCGAAAACTCTACTAT
AGCTTTGGACATggaattttctgtaaattcccaagttttatttagcttca
aattAAAATGGTACTAAAGTGGTGGTGAAGGAAAAGCTCCCCCTTTAGTT
CTGAATCgaccctaaaagcctagtatgaataggatTACGGCTGTTCTAAA
TCCACTGGCCATAAAACAGTCCAAAGATCCTTAGCGAATAGATATAATAG
AATTGATAGCATCGTATTCGATTGAAATCCAAAATCGATTATAATCGATT
GTATTTCATAAACAATCGattacacgtttcttttttaagaaactagtttt
accaagcagcctcaatgtttcttaagaaattgaccttttgagccttaaaa
tgtttcttacatgtttctaaactttttgacataatcagcctatttttcat
gcaaagaaaaaacatttgttttgattggaaggttcttaaaaaaaaaacaa
attaaaaaatgttattttctcattctcagcctcagcatgtttcttggatg
tttcttagtttttagacattcgtgtttcttaaaagtgtgtttcttaaaaa
aaacaacgtgtaattGTTTATTGCCATCAATGATCCCAACCAATATTTAG
AATCTGTTAAAAATTTATACACTCTATTAGCAACTGATAACACTTTCGTA
AAAGATGACTGATTGAGTGCCAAGATTATGAATTTTGATCTGAACGGTAC
TCCTTTGCATGCACGGGGCAGAGGATCAAGAGTACTTAAAGTCATTAAAG
TAGAgactttctttttgaatttgcGAGATAATTCAAATTTGCGTCCGGAA
TAGGTTTTTCGTTAGTATTAGAAAGTTTGATTACAGTAAATTAGCTGTTA
CAatttaatttaactgaaaagTTGCTGAAATCACTTTCAGTTAGCGCACG
TACACAAAACTGTTAGTAGCAGTAGTTGTAGCAGTCAGAGGAAATCCAAA
ATCAGATGTTTTTCGACTGACTGGACAGAGAGAAAGACAAGAAAGTTTCA
TGATTCGCTAAAAGgtaaattcattttgcttataGTTTATGCTAACACAT
AATGCTACATTTCTGAGCatcattttgtataaaaattgctttgcaaaatt
gtttttcaattttatttttttcaggacgTTGTTCGGATAATTGAAAACAC
TCCTGTTGACGGAAGCACTCCAAAAGAAGAAGTCATTGTTCACGATTCAG
GGCTCGAAACACTCGATAAACCTTTCAATGTAGAGAAAGAGGGATAAGTG
CCTCGAAAAGGTTTCTTTATTATACACGTTCTTTT

Coding sequence (CDS) from alignment at scaffold_477:158784..166918+

>TCONS_00067883 ID=TCONS_00067883|Name=TCONS_00067883|organism=Clytia hemisphaerica|type=CDS|length=4482bp|location=Sequence derived from alignment at scaffold_477:158784..166918+ (Clytia hemisphaerica)
ACAATGtccatttttgtccatttccagATTTCACCAAATTACATGTTCAT
TTCACAAGCAGTATATAAGAGGTTCATACGTGGATCAACAATCATGAAGG
TTTTGGCAACGGCAACTGTACTTTTGGTTGTCTTTGTACTGCACAGTCAA
ATGAACAATGCTGAAGCAGAGACATTAGGCAAAAGCTCTGGCGGTGGAAG
TAAAAAGAAGGGACCTAAAGTTACACATATAGTattttttgatatgaaaa
ttgGGAATAAAGAAATAGGACGTATCAGAATTGGTTTATTTGGAAAAACT
GTGCCCAAGACTGTTGATAATTTTGCACAATTAGCAACTGGAGAGAAAGG
CTTTGGATTTAAAGGCAGCAAGTTTCATCGTGTCATCAAAGACTTTATGA
TTCAAGGTGGTGATTTTACACGTGGTGATGGTACAGGAGGACGAAGCATC
TATGGTGATAAATTTCCCGATGAAAACTTCAAATTGAAGCATTATGGTCC
AGGATATGTTTCAATGGCAAATGCTGGCAAAGACACCAATGGATCCCAAT
TCTTTATCACCACTGTCAAAACTGGGTGGCTTGATGGAAAGCATGTCGTA
TTTGGTAAAATCCTTGGTGGAATGgacgTTGTTCGGATAATTGAAAACAC
TCCTGTTGACGGAAGCACTCCAAAAGAAGAAGTCATTGTTCACGATTCAG
GGCTCGAAACACTCGATAAACCTTTCAATGTAGAGAAAGAGGGATAAACA
ATGtccatttttgtccatttccagATTTCACCAAATTACATGTTCATTTC
ACAAGCAGTATATAAGAGGTTCATACGTGGATCAACAATCATGAAGGTTT
TGGCAACGGCAACTGTACTTTTGGTTGTCTTTGTACTGCACAGTCAAATG
AACAATGCTGAAGCAGAGACATTAGGCAAAAGCTCTGGCGGTGGAAGTAA
AAAGAAGGGACCTAAAGTTACACATATAGTattttttgatatgaaaattg
GGAATAAAGAAATAGGACGTATCAGAATTGGTTTATTTGGAAAAACTGTG
CCCAAGACTGTTGATAATTTTGCACAATTAGCAACTGGAGAGAAAGGCTT
TGGATTTAAAGGCAGCAAGTTTCATCGTGTCATCAAAGACTTTATGATTC
AAGGTGGTGATTTTACACGTGGTGATGGTACAGGAGGACGAAGCATCTAT
GGTGATAAATTTCCCGATGAAAACTTCAAATTGAAGCATTATGGTCCAGG
ATATGTTTCAATGGCAAATGCTGGCAAAGACACCAATGGATCCCAATTCT
TTATCACCACTGTCAAAACTGGGTGGCTTGATGGAAAGCATGTCGTATTT
GGTAAAATCCTTGGTGGAATGgacgTTGTTCGGATAATTGAAAACACTCC
TGTTGACGGAAGCACTCCAAAAGAAGAAGTCATTGTTCACGATTCAGGGC
TCGAAACACTCGATAAACCTTTCAATGTAGAGAAAGAGGGATAAACAATG
tccatttttgtccatttccagATTTCACCAAATTACATGTTCATTTCACA
AGCAGTATATAAGAGGTTCATACGTGGATCAACAATCATGAAGGTTTTGG
CAACGGCAACTGTACTTTTGGTTGTCTTTGTACTGCACAGTCAAATGAAC
AATGCTGAAGCAGAGACATTAGGCAAAAGCTCTGGCGGTGGAAGTAAAAA
GAAGGGACCTAAAGTTACACATATAGTattttttgatatgaaaattgGGA
ATAAAGAAATAGGACGTATCAGAATTGGTTTATTTGGAAAAACTGTGCCC
AAGACTGTTGATAATTTTGCACAATTAGCAACTGGAGAGAAAGGCTTTGG
ATTTAAAGGCAGCAAGTTTCATCGTGTCATCAAAGACTTTATGATTCAAG
GTGGTGATTTTACACGTGGTGATGGTACAGGAGGACGAAGCATCTATGGT
GATAAATTTCCCGATGAAAACTTCAAATTGAAGCATTATGGTCCAGGATA
TGTTTCAATGGCAAATGCTGGCAAAGACACCAATGGATCCCAATTCTTTA
TCACCACTGTCAAAACTGGGTGGCTTGATGGAAAGCATGTCGTATTTGGT
AAAATCCTTGGTGGAATGgacgTTGTTCGGATAATTGAAAACACTCCTGT
TGACGGAAGCACTCCAAAAGAAGAAGTCATTGTTCACGATTCAGGGCTCG
AAACACTCGATAAACCTTTCAATGTAGAGAAAGAGGGATAAACAATGtcc
atttttgtccatttccagATTTCACCAAATTACATGTTCATTTCACAAGC
AGTATATAAGAGGTTCATACGTGGATCAACAATCATGAAGGTTTTGGCAA
CGGCAACTGTACTTTTGGTTGTCTTTGTACTGCACAGTCAAATGAACAAT
GCTGAAGCAGAGACATTAGGCAAAAGCTCTGGCGGTGGAAGTAAAAAGAA
GGGACCTAAAGTTACACATATAGTattttttgatatgaaaattgGGAATA
AAGAAATAGGACGTATCAGAATTGGTTTATTTGGAAAAACTGTGCCCAAG
ACTGTTGATAATTTTGCACAATTAGCAACTGGAGAGAAAGGCTTTGGATT
TAAAGGCAGCAAGTTTCATCGTGTCATCAAAGACTTTATGATTCAAGGTG
GTGATTTTACACGTGGTGATGGTACAGGAGGACGAAGCATCTATGGTGAT
AAATTTCCCGATGAAAACTTCAAATTGAAGCATTATGGTCCAGGATATGT
TTCAATGGCAAATGCTGGCAAAGACACCAATGGATCCCAATTCTTTATCA
CCACTGTCAAAACTGGGTGGCTTGATGGAAAGCATGTCGTATTTGGTAAA
ATCCTTGGTGGAATGgacgTTGTTCGGATAATTGAAAACACTCCTGTTGA
CGGAAGCACTCCAAAAGAAGAAGTCATTGTTCACGATTCAGGGCTCGAAA
CACTCGATAAACCTTTCAATGTAGAGAAAGAGGGATAAACAATGtccatt
tttgtccatttccagATTTCACCAAATTACATGTTCATTTCACAAGCAGT
ATATAAGAGGTTCATACGTGGATCAACAATCATGAAGGTTTTGGCAACGG
CAACTGTACTTTTGGTTGTCTTTGTACTGCACAGTCAAATGAACAATGCT
GAAGCAGAGACATTAGGCAAAAGCTCTGGCGGTGGAAGTAAAAAGAAGGG
ACCTAAAGTTACACATATAGTattttttgatatgaaaattgGGAATAAAG
AAATAGGACGTATCAGAATTGGTTTATTTGGAAAAACTGTGCCCAAGACT
GTTGATAATTTTGCACAATTAGCAACTGGAGAGAAAGGCTTTGGATTTAA
AGGCAGCAAGTTTCATCGTGTCATCAAAGACTTTATGATTCAAGGTGGTG
ATTTTACACGTGGTGATGGTACAGGAGGACGAAGCATCTATGGTGATAAA
TTTCCCGATGAAAACTTCAAATTGAAGCATTATGGTCCAGGATATGTTTC
AATGGCAAATGCTGGCAAAGACACCAATGGATCCCAATTCTTTATCACCA
CTGTCAAAACTGGGTGGCTTGATGGAAAGCATGTCGTATTTGGTAAAATC
CTTGGTGGAATGgacgTTGTTCGGATAATTGAAAACACTCCTGTTGACGG
AAGCACTCCAAAAGAAGAAGTCATTGTTCACGATTCAGGGCTCGAAACAC
TCGATAAACCTTTCAATGTAGAGAAAGAGGGATAAACAATGtccattttt
gtccatttccagATTTCACCAAATTACATGTTCATTTCACAAGCAGTATA
TAAGAGGTTCATACGTGGATCAACAATCATGAAGGTTTTGGCAACGGCAA
CTGTACTTTTGGTTGTCTTTGTACTGCACAGTCAAATGAACAATGCTGAA
GCAGAGACATTAGGCAAAAGCTCTGGCGGTGGAAGTAAAAAGAAGGGACC
TAAAGTTACACATATAGTattttttgatatgaaaattgGGAATAAAGAAA
TAGGACGTATCAGAATTGGTTTATTTGGAAAAACTGTGCCCAAGACTGTT
GATAATTTTGCACAATTAGCAACTGGAGAGAAAGGCTTTGGATTTAAAGG
CAGCAAGTTTCATCGTGTCATCAAAGACTTTATGATTCAAGGTGGTGATT
TTACACGTGGTGATGGTACAGGAGGACGAAGCATCTATGGTGATAAATTT
CCCGATGAAAACTTCAAATTGAAGCATTATGGTCCAGGATATGTTTCAAT
GGCAAATGCTGGCAAAGACACCAATGGATCCCAATTCTTTATCACCACTG
TCAAAACTGGGTGGCTTGATGGAAAGCATGTCGTATTTGGTAAAATCCTT
GGTGGAATGgacgTTGTTCGGATAATTGAAAACACTCCTGTTGACGGAAG
CACTCCAAAAGAAGAAGTCATTGTTCACGATTCAGGGCTCGAAACACTCG
ATAAACCTTTCAATGTAGAGAAAGAGGGATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042397	XLOC_042397	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00067883-protein	TCONS_00067883-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_477	supercontig	scaffold_477:158784..166918 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
190.463	202.251	265.968	275.439	117.871	98.1798	179.371	184.178	185.327	177.021	169.893	190.046	128.957	131.634	130.492	145.05	142.058	139.324	78.8202	95.9304	72.6393	72.4249	102.399	94.6311	101.949	106.456	108.067	84.7026	132.644	110.086

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002130	Cyclophilin-type_PPIase_dom
IPR029000	Cyclophilin-like_dom
IPR020892	Cyclophilin-type_PPIase_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding
GO:0000413	protein peptidyl-prolyl isomerization

Vocabulary: **Molecular Function**
Term	Definition
GO:0003755	peptidyl-prolyl cis-trans isomerase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity

Blast

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BLAST of TCONS_00067883 vs. Swiss-Prot (Human)
Match: PPIB (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 6.196e-69
Identity = 128/175 (73.14%), Postives = 151/175 (86.29%), Query Frame = 3

Query:  222 VTHIVFFDMKIGNKEIGRIRIGLFGKTVPKTVDNFAQLATGEXXXXXXXXXXHRVIKDFMIQXXXXXXXXXXXXXSIYGDKFPDENFKLKHYGPGYVSMANAGKDTNGSQFFITTVKTGWLDGKHVVFGKILGGMDVVRIIENTPVDG-STPKEEVIVHDSGLETLDKPFNVEKE 743
            VT  V+FD++IG++++GR+  GLFGKTVPKTVDNF  LATGEKGFG+K SKFHRVIKDFMIQGGDFTRGDGTGG+SIYG++FPDENFKLKHYGPG+VSMANAGKDTNGSQFFITTVKT WLDGKHVVFGK+L GM+VVR +E+T  D    P ++VI+ D G   ++KPF + KE
Sbjct:   42 VTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAKE 216

The following BLAST results are available for this feature:

BLAST of TCONS_00067883 vs. Swiss-Prot (Human)

BLAST of TCONS_00067883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PPIB	6.196e-69	73.14	Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi...	[more]

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TCONS_00067883 (transcript) - C. hemisphaerica