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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067886 ID=TCONS_00067886|Name=TCONS_00067886|organism=Clytia hemisphaerica|type=transcript|length=1174bp
TTTCATGATAATTTGTAGGTCCTTCCTTTCAGCCTTTTGTTCAAGAAAGA
CAGTTAATATTGATTGACAGTTTTCTGATAGTCGAGCGTCATATAAATAG
AAGTCTTTGAACCATCCAATTTAAACAGTTATCAAACGTGCTCTGATCGT
AAGCAAGTCAGCAagcaaaatcattttctttcaagCATTCATTGCAAAAG
GTTCAAGAAGTGCAAGCGACACTACGAGAGAAAACAAGTCAAGACATCAG
CTACTAACAGTAAATAACTGACTCAAAACACCAGTTATAATCAAAATCCC
TTTCAtcaacaataacaacaacaaataTGGATAAATACTGCAAACGCTCA
ATTGGTTGTTCCAGCTTGATCAAAAACCTGGCTGCTTCACAAATCAAGAA
GACTTCACCAAAGAAGAGCGCACAGAAATACGTTAGCTCCAACTCGAATG
GTTATCGTGgatattcgaatgttttcagTTCGGAATCGTATGGATCGATT
TATTCGAGATCGTGTCTTATCGAAAGCAACTCGAGGAATAATAACATTAA
CAAGAAAAACAAGACCAAAGGAAACAAAATCAACAACAGGCTCTAAATGA
AATGAATACTATTTAGAAGAAACGCTCATGACAGATAGAAGATGAGAGAG
CCTAATCTAGGCTAAATCTAATCAGCTCTTGGGGCCTTCTCTGAAGAAAT
TAGGCTAGTACCAGCTTCAACTAATACCATCTTTCTATATGATTTGGCAG
TTTTGATGAGTCTTACACAAGGAAATCTCTTATACCGTCGAAACCATAAT
TCTACAAACTCAAAAACTTATATGTAGGAGAAGATTTATGGGGTATTAAA
GATGACCAGACCCAACATTGAGAGCTCAGCCAAAGATGTTGGCTTCAATG
AGTGAGAACTCAACATTTAACTTGAAATTGAATAATGCTTGATTTTACAA
GTATTTGATGAAGCTTTCAAGGCGATTAAATTAAGTCAGtatcgattttt
tttatttcgatcaaaatgtttttgtaaaaaagtttttttttcatattaga
TTTTCGACCATtgtaaatatgtaaattttgtAGATACGGGTATATTAAAG
TGTAAACTTTTGAGAGGTCTTTCTGtttatatgaaaaatgaaatatataa
CTATGATGAATGATAACCCTGAAA Run BLAST on NCBI transcript from alignment at scaffold_477:315240..316885+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067886 ID=TCONS_00067886|Name=TCONS_00067886|organism=Clytia hemisphaerica|type=transcript|length=1646bp|location=Sequence derived from alignment at scaffold_477:315240..316885+ (Clytia hemisphaerica)
TTTCATGATAATTTGTAGGTCCTTCCTTTCAGCCTTTTGTTCAAGAAAGA
CAGTTAATATTGATTGACAGTTTTCTGATAGTCGAGCGTCATATAAATAG
AAGTCTTTGAACCATCCAATTTAAACAGTTATCAAACGTGCTCTGATCGT
AAGCAAGTCAGCAagcaaaatcattttctttcaagGTAAGAAACACTGGT
TTTTTTCTTATCTTGTTAATCGACTGtgtgaaagtaacttttttttctaa
atttctcaATAACTATAAGAGGGAAATCGCGTACTCAAAACACAGTGGGA
AAAGGCAGTCTTTATTTTTGATGTGCCGTCACTTTAGCAaggaaaaaaag
gagaaaaaaggattcattgattttttttttgatacaatTGATATCCTTGT
TCTCCGCCTGTCGCACTGGACGGTCGGTTTCCCTTTACACAAAGAAATTT
CATGTGATTGAGCCTCTGTCATTTTTCCGGGGGTATTTTGTTCGTGAACA
TTGAAAACACATCAATCAATTAAGCTAACCAGGGGGTATTTTATCAATTA
ATGGTCCGATGCAAAGTGATTCTCCATTGTTTTGCAGTTTAGTGATATTT
AAAAGGGACATCTTTTAGATCGTGTgataatcaaaaatcaattcATTCTT
ATTTTAGCATTCATTGCAAAAGGTTCAAGAAGTGCAAGCGACACTACGAG
AGAAAACAAGTCAAGACATCAGCTACTAACAGTAAATAACTGACTCAAAA
CACCAGTTATAATCAAAATCCCTTTCAtcaacaataacaacaacaaataT
GGATAAATACTGCAAACGCTCAATTGGTTGTTCCAGCTTGATCAAAAACC
TGGCTGCTTCACAAATCAAGAAGACTTCACCAAAGAAGAGCGCACAGAAA
TACGTTAGCTCCAACTCGAATGGTTATCGTGgatattcgaatgttttcag
TTCGGAATCGTATGGATCGATTTATTCGAGATCGTGTCTTATCGAAAGCA
ACTCGAGGAATAATAACATTAACAAGAAAAACAAGACCAAAGGAAACAAA
ATCAACAACAGGCTCTAAATGAAATGAATACTATTTAGAAGAAACGCTCA
TGACAGATAGAAGATGAGAGAGCCTAATCTAGGCTAAATCTAATCAGCTC
TTGGGGCCTTCTCTGAAGAAATTAGGCTAGTACCAGCTTCAACTAATACC
ATCTTTCTATATGATTTGGCAGTTTTGATGAGTCTTACACAAGGAAATCT
CTTATACCGTCGAAACCATAATTCTACAAACTCAAAAACTTATATGTAGG
AGAAGATTTATGGGGTATTAAAGATGACCAGACCCAACATTGAGAGCTCA
GCCAAAGATGTTGGCTTCAATGAGTGAGAACTCAACATTTAACTTGAAAT
TGAATAATGCTTGATTTTACAAGTATTTGATGAAGCTTTCAAGGCGATTA
AATTAAGTCAGtatcgattttttttatttcgatcaaaatgtttttgtaaa
aaagtttttttttcatattagaTTTTCGACCATtgtaaatatgtaaattt
tgtAGATACGGGTATATTAAAGTGTAAACTTTTGAGAGGTCTTTCTGttt
atatgaaaaatgaaatatataaCTATGATGAATGATAACCCTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067886-exon-scaffold_477-1491911889:315240..315424 | TCONS_00067886-exon-scaffold_477-1491911889:315240..315424 | Clytia hemisphaerica | exon |
| TCONS_00067886-exon-scaffold_477-1510915933:315240..315424 | TCONS_00067886-exon-scaffold_477-1510915933:315240..315424 | Clytia hemisphaerica | exon |
| TCONS_00067886-exon-scaffold_477-1575043694:315240..315424 | TCONS_00067886-exon-scaffold_477-1575043694:315240..315424 | Clytia hemisphaerica | exon |
| TCONS_00067886-exon-scaffold_477-1491911889:315897..316885 | TCONS_00067886-exon-scaffold_477-1491911889:315897..316885 | Clytia hemisphaerica | exon |
| TCONS_00067886-exon-scaffold_477-1510915933:315897..316885 | TCONS_00067886-exon-scaffold_477-1510915933:315897..316885 | Clytia hemisphaerica | exon |
| TCONS_00067886-exon-scaffold_477-1575043694:315897..316885 | TCONS_00067886-exon-scaffold_477-1575043694:315897..316885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:315240..316885 + |
Blast
The following BLAST results are available for this feature:
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