TCONS_00067887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067887
Unique NameTCONS_00067887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067887 ID=TCONS_00067887|Name=TCONS_00067887|organism=Clytia hemisphaerica|type=transcript|length=2403bp
CACCATCTTGAAGAAAAGCTGCAGATGTAGTGGAAGGGAGCATTAGGAGA
AAAGTAAGAAAAGAGTTTGGGAGTGAAGAAGTTGTCGCTTTAATCAGTGC
TGAAGAAAGGGAAAGAGAGGAGAGAGTCATTATTGAGATAAATTGTGGTG
TGGAAGTAATAAGAGGGTACATGATGGAGGTAGAGAGCTGATTGGTGGAA
AGGGTCTGTGGAAGGGCGGGTGTACTCTGTAGTGCTTCACTTGAAGATGA
AGAGAAGGATGGAGTGATGGAGGGTTGGTAGGGCAGCGATGGGGAGCGTA
CACTGGTAGTAAATGGAAGTTGGGTGGATGAAGAAGGTCGTGTAGGAACA
ATAGAGTTGGAGTCTGGTGAAAGAGATGGGTTCGATGGTTGATTTGTGAC
GAGGTTGGTAGTTGCTAGATATGAAAGTGTAGTTGTTGCTTGATTTTGAT
GATTGTTGCTTGAAGAGGAAATAGAAGAGGAAGGACTAATGGATTGGGCA
GCTGGTTGGTTGTGAGTAGTGGTCTGGGGTGTTTCTGGGGTTTGAGTTGA
AGTATAGATAGTGGTCTGGTGGGCGACTGGTGGGCGGTTAGTGGTTTGAG
AGGTTGAAAGGGTATGTATATTGGTTTGGTCAGCCGTTGGGGTGTGAGTC
GTGGTTTGAAAAGATTGTGAATATTGAACAGTTTGTGTTGCGATGGGTGC
AGGAGAAGAACACCAGCATGAATACTTCTTTGATTCAAAAGAAGTTAAGA
AAGAATGAGAGGAAAAGATGGCTGTGTGTTGGTTATTTTCTGTAACATGT
GAGAATGACTCAGATGTTTGCAGGTGGTCGGAGGTGATAGGAATGGAGTT
GGAAGTGATAGGAATGGAGTTCATGGAGGAAATAGCAGGGCTTGTTAATT
GAGGAGAGGTTGAGTTGTTCTCGAGAGTAGAAGAGTTTTGATTGTTAGTA
CCAGAGGATATAGTTTGCGATGAATACTTCCTTGATTCGGAAGAAGTTAA
GAAAGAATGAGAAGAAAAGATGCTTGTGTTTtggttattttctttaaaat
gtgAAGATGACTCAGATGTTTGCAGGTGGTTGGAGGTGATAGGAATGGAG
TTGGAAGTGATAGGAATGGAGTTGGAGGTGATAGGAATGGAGTTCAATGA
GGAAATGACAGGGCCTGTTAATTGAGGAGAGGTTGAGTTGTTCTCAAGTG
TAGAGGAATTTTGATTGTTAATACCAGAGAATATAGTTTGCGATGGTGAG
CTTGAAACTGAAGGTTGGCACAAACATGTGAATTGGTTTGGGTTGACGGA
TGTGAAAagtgaaagaagaaaagaagtcCCTGATATGCTTGAATGTGTAT
ATATAGTCTGGTTTGTTTGGAGTTGGGAATAGTTATTGGGTACGGCGCTA
TTGAATCGGATGGACGATTGAAAAGAGGGCGTATGCTCCTGTAGAATGGG
TGTTGGTGATAAGGACTGGGTGGACAGTATTGATTGAGGTTGGTTTACTA
GTGTTTCTGGTAAACTCGATGGTATTAAATTCACTGTTGTCATTGGTAGT
GATGAATCATTGATATTGGGTACTGGACTCGACATTGCTTTTGTTTCTTG
TACTCCAGTCGTGGATAAGAGATCTGTTGGATCTGCATCTGTTGTGGTAA
CCATTTCTAGAGTAAAATTCTCTGAAGATATCATTGATGACAGTGTAACT
TGTGGCCAACTGAATGTTGATATTGAGTCGGTGTTACTAAATGAAGAGCC
CGATCCTTGTATCTCTGGTTCCATCTTCTGTGATTTTGGAGCAGTTGCAA
ATACTTGAGAAGATTCTCTGTTTAAAGTTTCTACTTCAGTTATTGTCGTC
GATAATACAGAATCAGAAAATAATATTGATGTCTGACTTAATGTCGAAGA
TATTGACGTCTGACTTAGTGTCGGAGATGTTGATAGCTGTATTGATGTCG
GAGATATTGATGCCTGACTTGACGTCGAAGATGTCAATATCTGACTTGAT
GTCGAAGATATTGACGTCTGACTTAGTGTCGGAGATGTTGATAGCTGTAT
TGATGTCGGAGATATTGATGCCTGACTTGACGTCGAAGATGTCAATATCT
GACTTGATGTCTGTATTGATAAAGGAGATGTTGACATATGATTTGACGTT
AAAGATGTCAATGTCTGACTTGGTGTCGGAGATATTGATGTCTGACTTGA
TGTTGAAGATATTGATGCTTGAATTGATGTCGGAGATATTGACATCAGAC
TTGATGTCGAAGATACTGATGCCTGAATTGATGTCTGACTTGATGTCGAA
GATATTGATAACTGACTTGATCTCAGAGATATTGACATCTGACTTGATGT
CGAAGATATTGATGCCTGAATTGATGTCTGACTTGATGATGTCGAAGATA
TTG
Run BLAST on NCBI

transcript from alignment at scaffold_477:421284..423728+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067887 ID=TCONS_00067887|Name=TCONS_00067887|organism=Clytia hemisphaerica|type=transcript|length=2445bp|location=Sequence derived from alignment at scaffold_477:421284..423728+ (Clytia hemisphaerica)
CACCATCTTGAAGAAAAGCTGCAGATGTAGTGGAAGGGAGCATTAGGAGA
AAAGTAAGAAAAGAGTTTGGGAGTGAAGAAGTTGTCGCTTTAATCAGTGC
TGAAGAAAGGGAAAGAGAGGAGAGAGTCATTATTGAGATAAATTGTGGTG
TGGAAGTAATAAGAGGGTACATGATGGAGGTAGAGAGCTGATTGGTGGAA
AGGGTCTGTGGAAGGGCGGGTGTACTCTGTAGTGCTTCACTTGAAGATGA
AGAGAAGGATGGAGTGATGGAGGGTTGGTAGGGCAGCGATGGGGAGCGTA
CACTGGTAGTAAATGGAAGTTGGGTGGATGAAGAAGGTCGTGTAGGAACA
ATAGAGTTGGAGTCTGGTGAAAGAGATGGGTTCGATGGTTGATTTGTGAC
GAGGTTGGTAGTTGCTAGATATGAAAGTGTAGTTGTTGCTTGATTTTGAT
GATTGTTGCTTGAAGAGGAAATAGAAGAGGAAGGACTAATGGATTGGGCA
GCTGGTTGGTTGTGAGTAGTGGTCTGGGGTGTTTCTGGGGTTTGAGTTGA
AGTATAGATAGTGGTCTGGTGGGCGACTGGTGGGCGGTTAGTGGTTTGAG
AGGTTGAAAGGGTATGTATATTGGTTTGGTCAGCCGTTGGGGTGTGAGTC
GTGGTTTGAAAAGATTGTGAATATTGAACAGTTTGTGTTGCGATGGGTGC
AGGAGAAGAACACCAGCATGAATACTTCTTTGATTCAAAAGAAGTTAAGA
AAGAATGAGAGGAAAAGATGGCTGTGTGTTGGTTATTTTCTGTAACATGT
GAGAATGACTCAGATGTTTGCAGGTGGTCGGAGGTGATAGGAATGGAGTT
GGAAGTGATAGGAATGGAGTTCATGGAGGAAATAGCAGGGCTTGTTAATT
GAGGAGAGGTTGAGTTGTTCTCGAGAGTAGAAGAGTTTTGATTGTTAGTA
CCAGAGGATATAGTTTGCGATGAATACTTCCTTGATTCGGAAGAAGTTAA
GAAAGAATGAGAAGAAAAGATGCTTGTGTTTtggttattttctttaaaat
gtgAAGATGACTCAGATGTTTGCAGGTGGTTGGAGGTGATAGGAATGGAG
TTGGAAGTGATAGGAGTGGAGTTGGAGGTGATAGGAGTGGAGTTGGAGGT
GATAGGAATGGAGTTGGAGGTGATAGGAATGGAGTTCAATGAGGAAATGA
CAGGGCCTGTTAATTGAGGAGAGGTTGAGTTGTTCTCAAGTGTAGAGGAA
TTTTGATTGTTAATACCAGAGAATATAGTTTGCGATGGTGAGCTTGAAAC
TGAAGGTTGGCACAAACATGTGAATTGGTTTGGGTTGACGGATGTGAAAa
gtgaaagaagaaaagaagtcCCTGATATGCTTGAATGTGTATATATAGTC
TGGTTTGTTTGGAGTTGGGAATAGTTATTGGGTACGGCGCTATTGAATCG
GATGGACGATTGAAAAGAGGGCGTATGCTCCTGTAGAATGGGTGTTGGTG
ATAAGGACTGGGTGGACAGTATTGATTGAGGTTGGTTTACTAGTGTTTCT
GGTAAACTCGATGGTATTAAATTCACTGTTGTCATTGGTAGTGATGAATC
ATTGATATTGGGTACTGGACTCGACATTGCTTTTGTTTCTTGTACTCCAG
TCGTGGATAAGAGATCTGTTGGATCTGCATCTGTTGTGGTAACCATTTCT
AGAGTAAAATTCTCTGAAGATATCATTGATGACAGTGTAACTTGTGGCCA
ACTGAATGTTGATATTGAGTCGGTGTTACTAAATGAAGAGCCCGATCCTT
GTATCTCTGGTTCCATCTTCTGTGATTTTGGAGCAGTTGCAAATACTTGA
GAAGATTCTCTGTTTAAAGTTTCTACTTCAGTTATTGTCGTCGATAATAC
AGAATCAGAAAATAATATTGATGTCTGACTTAATGTCGAAGATATTGACG
TCTGACTTAGTGTCGGAGATGTTGATAGCTGTATTGATGTCGGAGATATT
GATGCCTGACTTGACGTCGAAGATGTCAATATCTGACTTGATGTCGAAGA
TATTGACGTCTGACTTAGTGTCGGAGATGTTGATAGCTGTATTGATGTCG
GAGATATTGATGCCTGACTTGACGTCGAAGATGTCAATATCTGACTTGAT
GTCTGTATTGATAAAGGAGATGTTGACATATGATTTGACGTTAAAGATGT
CAATGTCTGACTTGGTGTCGGAGATATTGATGTCTGACTTGATGTTGAAG
ATATTGATGCTTGAATTGATGTCGGAGATATTGACATCAGACTTGATGTC
GAAGATACTGATGCCTGAATTGATGTCTGACTTGATGTCGAAGATATTGA
TAACTGACTTGATCTCAGAGATATTGACATCTGACTTGATGTCGAAGATA
TTGATGCCTGAATTGATGTCTGACTTGATGATGTCGAAGATATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042401XLOC_042401Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067887-exon-scaffold_477-1491911889:421284..422389TCONS_00067887-exon-scaffold_477-1491911889:421284..422389Clytia hemisphaericaexon
TCONS_00067887-exon-scaffold_477-1510915933:421284..422389TCONS_00067887-exon-scaffold_477-1510915933:421284..422389Clytia hemisphaericaexon
TCONS_00067887-exon-scaffold_477-1575043694:421284..422389TCONS_00067887-exon-scaffold_477-1575043694:421284..422389Clytia hemisphaericaexon
TCONS_00067887-exon-scaffold_477-1491911889:422432..423728TCONS_00067887-exon-scaffold_477-1491911889:422432..423728Clytia hemisphaericaexon
TCONS_00067887-exon-scaffold_477-1510915933:422432..423728TCONS_00067887-exon-scaffold_477-1510915933:422432..423728Clytia hemisphaericaexon
TCONS_00067887-exon-scaffold_477-1575043694:422432..423728TCONS_00067887-exon-scaffold_477-1575043694:422432..423728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:421284..423728 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.05209	0.52786	0	0	0	0	1.30365	1.30041	0.0312688	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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