TCONS_00067894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067894
Unique NameTCONS_00067894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067894 ID=TCONS_00067894|Name=TCONS_00067894|organism=Clytia hemisphaerica|type=transcript|length=795bp
TGTAAACCCACCAACAGTCtgctgctagacattaatatgATACCAGAAAA
AGTATCAAGATTCAAGTAATAAGAGGCTGTGCATATCACCACCATGTTAC
ACCTACTCCGTCGAAGAAGTTCAATCTTTATCTGCATTTGTCTTTTTGTT
GTGCTCACCTTCCGTAGTTTATTTGCGTCAATCAAAATACAAAGCTCGAA
ATTGTCAGTAACTGAAGATCTAAACAAGCTTAACTTAAACAACTCTATTG
ATCCGATAGAGAAGGCACAAATCTTAATGGAAGTTGGGAGCCTTGTTGGG
GACAAAACCTTACATTTCTGTCCgttatttttcatcaatttcatGCGGAA
TAATGACCAAAAAGTGAATGAACCAGAGCTTTCGAGCTATAACAAAGGCA
TGTGCAAAAAACAAAGAGGACCGCAATGCGAAGCTAAATATCTTCAAGGC
CCTTTAAAAGTTAGCAAGGAAATATTAAGTATGGAATGGCTTcacaaaaa
tgaactttcatttgTTAAAACAGGTGGTTGGTACATGCCTACAGGATGTG
ATATCAGCACCCGTACGGCTATCATAATTCCATTCCGTAACCGCGAACAA
CATCTCCCCGTAATGTTACGTCAGTTACACGCCGTGTTGCGCCATCAGCA
AATTCATTACCGTATTTTTGTGATTGAACAATCGGACGAACATCCGTTCA
ACCGTGGTAAAATACGTAATATTGGTTTCAAAGAAGCGTTACGTTATTTC
CCGTATACATGCTTCGTTTTCCATGACGTAGATCTTGTTCCAGAA
Run BLAST on NCBI

protein sequence of TCONS_00067894-protein

>TCONS_00067894-protein ID=TCONS_00067894-protein|Name=TCONS_00067894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MLHLLRRRSSIFICICLFVVLTFRSLFASIKIQSSKLSVTEDLNKLNLNN
SIDPIEKAQILMEVGSLVGDKTLHFCPLFFINFMRNNDQKVNEPELSSYN
KGMCKKQRGPQCEAKYLQGPLKVSKEILSMEWLHKNELSFVKTGGWYMPT
GCDISTRTAIIIPFRNREQHLPVMLRQLHAVLRHQQIHYRIFVIEQSDEH
PFNRGKIRNIGFKEALRYFPYTCFVFHDVDLVPE
Run BLAST on NCBI

transcript from alignment at scaffold_477:193895..194939-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067894 ID=TCONS_00067894|Name=TCONS_00067894|organism=Clytia hemisphaerica|type=transcript|length=1045bp|location=Sequence derived from alignment at scaffold_477:193895..194939- (Clytia hemisphaerica)
TGTAAACCCACCAACAGTCTGCTGCTAGACATTAATATGGTAATATTTGC
TCTTCATCTTTGATTCTTTTTACTGTATTTAGATTGACAAATGCGCGTTA
AATTTTTATTATTGATCTTCACTTCAGAGGTTTTTTTCTTTGAAAACTCA
ACCTCTGATGCTCATGGCAGTGAAAGTGAAGTTTAAAAGTTCTGTTACAG
TGATAATGGTTCTAACGAGACAACACCTAGCAAAAAGAGATTCATGATTA
AAAAGCTTAAAAAATCGTTTTCCTTTCTGTTTTCTTTAGATACCAGAAAA
AGTATCAAGATTCAAGTAATAAGAGGCTGTGCATATCACCACCATGTTAC
ACCTACTCCGTCGAAGAAGTTCAATCTTTATCTGCATTTGTCTTTTTGTT
GTGCTCACCTTCCGTAGTTTATTTGCGTCAATCAAAATACAAAGCTCGAA
ATTGTCAGTAACTGAAGATCTAAACAAGCTTAACTTAAACAACTCTATTG
ATCCGATAGAGAAGGCACAAATCTTAATGGAAGTTGGGAGCCTTGTTGGG
GACAAAACCTTACATTTCTGTCCGTTATTTTTCATCAATTTCATGCGGAA
TAATGACCAAAAAGTGAATGAACCAGAGCTTTCGAGCTATAACAAAGGCA
TGTGCAAAAAACAAAGAGGACCGCAATGCGAAGCTAAATATCTTCAAGGC
CCTTTAAAAGTTAGCAAGGAAATATTAAGTATGGAATGGCTTCACAAAAA
TGAACTTTCATTTGTTAAAACAGGTGGTTGGTACATGCCTACAGGATGTG
ATATCAGCACCCGTACGGCTATCATAATTCCATTCCGTAACCGCGAACAA
CATCTCCCCGTAATGTTACGTCAGTTACACGCCGTGTTGCGCCATCAGCA
AATTCATTACCGTATTTTTGTGATTGAACAATCGGACGAACATCCGTTCA
ACCGTGGTAAAATACGTAATATTGGTTTCAAAGAAGCGTTACGTTATTTC
CCGTATACATGCTTCGTTTTCCATGACGTAGATCTTGTTCCAGAA

Coding sequence (CDS) from alignment at scaffold_477:193895..194939-

>TCONS_00067894 ID=TCONS_00067894|Name=TCONS_00067894|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_477:193895..194939- (Clytia hemisphaerica)
ATGTTACACCTACTCCGTCGAAGAAGTTCAATCTTTATCTGCATTTGTCT
TTTTGTTGTGCTCACCTTCCGTAGTTTATTTGCGTCAATCAAAATACAAA
GCTCGAAATTGTCAGTAACTGAAGATCTAAACAAGCTTAACTTAAACAAC
TCTATTGATCCGATAGAGAAGGCACAAATCTTAATGGAAGTTGGGAGCCT
TGTTGGGGACAAAACCTTACATTTCTGTCCGTTATTTTTCATCAATTTCA
TGCGGAATAATGACCAAAAAGTGAATGAACCAGAGCTTTCGAGCTATAAC
AAAGGCATGTGCAAAAAACAAAGAGGACCGCAATGCGAAGCTAAATATCT
TCAAGGCCCTTTAAAAGTTAGCAAGGAAATATTAAGTATGGAATGGCTTC
ACAAAAATGAACTTTCATTTGTTAAAACAGGTGGTTGGTACATGCCTACA
GGATGTGATATCAGCACCCGTACGGCTATCATAATTCCATTCCGTAACCG
CGAACAACATCTCCCCGTAATGTTACGTCAGTTACACGCCGTGTTGCGCC
ATCAGCAAATTCATTACCGTATTTTTGTGATTGAACAATCGGACGAACAT
CCGTTCAACCGTGGTAAAATACGTAATATTGGTTTCAAAGAAGCGTTACG
TTATTTCCCGTATACATGCTTCGTTTTCCATGACGTAGATCTTGTTCCAG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042405XLOC_042405Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067894-proteinTCONS_00067894-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067894-exon-scaffold_477-1575043694:194901..194939TCONS_00067894-exon-scaffold_477-1575043694:194901..194939Clytia hemisphaericaexon
TCONS_00067894-exon-scaffold_477-1575043694:193895..194650TCONS_00067894-exon-scaffold_477-1575043694:193895..194650Clytia hemisphaericaexon
TCONS_00067894-exon-scaffold_477-1510915933:194901..194939TCONS_00067894-exon-scaffold_477-1510915933:194901..194939Clytia hemisphaericaexon
TCONS_00067894-exon-scaffold_477-1510915933:193895..194650TCONS_00067894-exon-scaffold_477-1510915933:193895..194650Clytia hemisphaericaexon
TCONS_00067894-exon-scaffold_477-1491911889:194901..194939TCONS_00067894-exon-scaffold_477-1491911889:194901..194939Clytia hemisphaericaexon
TCONS_00067894-exon-scaffold_477-1491911889:193895..194650TCONS_00067894-exon-scaffold_477-1491911889:193895..194650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:193895..194939 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.54488	0.767497	0.205647	0.469452	0.571512	0.0645166	0.23351	0.218609	0.357124	1.12814	0.429362	0.362887	3.4225	4.22335	3.98783	4.27621	3.22823	2.71636	1.48023	1.34691	0.977095	0.731878	0.646879	0.913405	0.523344	0.358248	1.31138	1.77781	1.74239	1.09541
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003859Galactosyl_T
IPR027995Galactosyl_T_N
IPR029044Nucleotide-diphossugar_trans
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
[Close]
BLAST of TCONS_00067894 vs. Swiss-Prot (Human)
Match: B4GT1 (Beta-1,4-galactosyltransferase 1 OS=Homo sapiens GN=B4GALT1 PE=1 SV=5)

HSP 1 Score: 110.538 bits (275), Expect = 8.943e-28
Identity = 59/127 (46.46%), Postives = 81/127 (63.78%), Query Frame = 1 
Query:  421 PQC--EAKYLQGPLKVSKEI-LSMEWLHKNELSFVKTGGWYMPTGCDISTRTAIIIPFRNREQHLPVMLRQLHAVLRHQQIHYRIFVIEQSDEHPFNRGKIRNIGFKEALRYFPYTCFVFHDVDLVP 792
            P C  E+  L GP+ +   + + +E + K   + VK GG Y P  C    + AIIIPFRNR++HL   L  LH VL+ QQ+ Y I+VI Q+ +  FNR K+ N+GF+EAL+ + YTCFVF DVDL+P
Sbjct:  128 PACPEESPLLVGPMLIEFNMPVDLELVAKQNPN-VKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIP 253
The following BLAST results are available for this feature:
BLAST of TCONS_00067894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT18.943e-2846.46Beta-1,4-galactosyltransferase 1 OS=Homo sapiens G... [more]
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