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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067951 ID=TCONS_00067951|Name=TCONS_00067951|organism=Clytia hemisphaerica|type=transcript|length=1614bp
TGTTTACTGGACCTGTTTAAACAGTGAAAAATTAGACGAAAAATCTTTTG
GAAGAAATAAGGAAAACGAAGCTTTTACACTGAAAGAAAAGTGATGTAAA
GTTGTAAAGTAAGATTTCTGAAAAATGTTGAACAAAATTTTAGTGGCTAT
ACTACTTGGAATAATTCAAGTGTCGACTACCTGTGACGTCAACAATCGGG
ATGAATCGGGTACATATGACGTCATTAATCGGGACGAATCGGGTAACAAT
GCTGTCGTTGGACGAGACGAAGAGGCGGGAAGTACTTTAAGAAAATTAGA
AGAGAAAATGTTCACTCAGTTGTTGCGGGATGAacagagaaaagagaaaa
agaatatGGTATATTCTCCTTATAGCATCTTCACACTTATCAAATCAATG
TCTGCACTACTGGACAAAGAGCATCGAGCTGCAGTTAAAACAGCTTTGGG
ACTGGACCCGAACCACGTGGACGTTATCAAACCATCCATCACATCACCAG
AGTTGAAAGAAGCCAACAAAATTTGGATCGATTCGAAACTTGAATTAGAT
tcagaaatcaagaaaaaatacaAACAGATTATTGAGCAGATTCCCATGAA
AGGACATGTAAAGAAGACAAGCGATATGATTAATGGGTGGGTTTCAAATC
ACACTATGGGTATGATTAAGGAGCTCTTAACACCAGACAGTATCATTACC
GACTATTCTGTTCTTGTTGTCAATACATTAGCATTTCATGGTCACTGGAA
GATACCCTTTAAACCTGAACAAACGAAAGAAATGGATTTCCATGTGAGTG
AAAATGAGAAGGTTAAGGTCAAAATGATGTTCGGTTCAATCAAAGGGAGA
TTCCATCGTGGTGAAAACTTCGAAGTTGTTGAGATCCCTTATGCAGGAGA
TAGGTATAGTTTCTGTATAGTTCTCCCTGGTCAGACGTACCCTGCCAAAC
GGAAGGAGGATATTACAGAGATCTTGGAATCTAAGATGACCAGACCAATC
AAAATACAAGTATTTCtaccaaaatttaaaatcacaAGCGATTTTGTTCT
TAATAACGTTTTGAGAACAGCTGGGTTCAATTCGTTGTTTTCTCGGATTG
CGGCTGTGAAAAATACTGACATCAATTTCATGGATGTTATACAGAAAGTC
GCCATTGAAGTGAACGAGGAAGGAACAAAGGCTAGTGCTGGAAGTCTAGG
AGCCTCTGGGCGTTCAATGCCATTACGAGTTACAGTTGACAGACCGTTCG
AATTCATGATACGAGATGTGAAAGAGAAAAAGACCCTTTTTCATGGTTTT
GTTCAAAAACCtgaatttgaataattttttttcaatttcctcgagaaaag
atttttttctccaaaatcaaaCCGAAGatctttttaatattttttgggac
gagatggagtttttacaagttcttatttgatttggttggtcgttaaccag
taataaaacaatgttattactttttctaaagaacgcgtcatttttattac
ttcaaatgaccaattattaaagtatcttttaAAAACTACATCTCATCTGT
ACTTTTTTAAGGTTTACAATACGATAAAGACCTGTGGTTAAAAAGTTAGG
CGATCTAAATTGAG Run BLAST on NCBI protein sequence of TCONS_00067951-protein >TCONS_00067951-protein ID=TCONS_00067951-protein|Name=TCONS_00067951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MLNKILVAILLGIIQVSTTCDVNNRDESGTYDVINRDESGNNAVVGRDEE
AGSTLRKLEEKMFTQLLRDEQRKEKKNMVYSPYSIFTLIKSMSALLDKEH
RAAVKTALGLDPNHVDVIKPSITSPELKEANKIWIDSKLELDSEIKKKYK
QIIEQIPMKGHVKKTSDMINGWVSNHTMGMIKELLTPDSIITDYSVLVVN
TLAFHGHWKIPFKPEQTKEMDFHVSENEKVKVKMMFGSIKGRFHRGENFE
VVEIPYAGDRYSFCIVLPGQTYPAKRKEDITEILESKMTRPIKIQVFLPK
FKITSDFVLNNVLRTAGFNSLFSRIAAVKNTDINFMDVIQKVAIEVNEEG
TKASAGSLGASGRSMPLRVTVDRPFEFMIRDVKEKKTLFHGFVQKPEFE Run BLAST on NCBI transcript from alignment at scaffold_477:168177..169790 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067951 ID=TCONS_00067951|Name=TCONS_00067951|organism=Clytia hemisphaerica|type=transcript|length=1614bp|location=Sequence derived from alignment at scaffold_477:168177..169790 (Clytia hemisphaerica)
CTCAATTTAGATCGCCTAACTTTTTAACCACAGGTCTTTATCGTATTGTA
AACCTTAAAAAAGTACAGATGAGATGTAGTTTTtaaaagatactttaata
attggtcatttgaagtaataaaaatgacgcgttctttagaaaaagtaata
acattgttttattactggttaacgaccaaccaaatcaaataagaacttgt
aaaaactccatctcgtcccaaaaaatattaaaaagatCTTCGGtttgatt
ttggagaaaaaaatcttttctcgaggaaattgaaaaaaaattattcaaat
tcaGGTTTTTGAACAAAACCATGAAAAAGGGTCTTTTTCTCTTTCACATC
TCGTATCATGAATTCGAACGGTCTGTCAACTGTAACTCGTAATGGCATTG
AACGCCCAGAGGCTCCTAGACTTCCAGCACTAGCCTTTGTTCCTTCCTCG
TTCACTTCAATGGCGACTTTCTGTATAACATCCATGAAATTGATGTCAGT
ATTTTTCACAGCCGCAATCCGAGAAAACAACGAATTGAACCCAGCTGTTC
TCAAAACGTTATTAAGAACAAAATCGCTtgtgattttaaattttggtaGA
AATACTTGTATTTTGATTGGTCTGGTCATCTTAGATTCCAAGATCTCTGT
AATATCCTCCTTCCGTTTGGCAGGGTACGTCTGACCAGGGAGAACTATAC
AGAAACTATACCTATCTCCTGCATAAGGGATCTCAACAACTTCGAAGTTT
TCACCACGATGGAATCTCCCTTTGATTGAACCGAACATCATTTTGACCTT
AACCTTCTCATTTTCACTCACATGGAAATCCATTTCTTTCGTTTGTTCAG
GTTTAAAGGGTATCTTCCAGTGACCATGAAATGCTAATGTATTGACAACA
AGAACAGAATAGTCGGTAATGATACTGTCTGGTGTTAAGAGCTCCTTAAT
CATACCCATAGTGTGATTTGAAACCCACCCATTAATCATATCGCTTGTCT
TCTTTACATGTCCTTTCATGGGAATCTGCTCAATAATCTGTTtgtatttt
ttcttgatttctgaATCTAATTCAAGTTTCGAATCGATCCAAATTTTGTT
GGCTTCTTTCAACTCTGGTGATGTGATGGATGGTTTGATAACGTCCACGT
GGTTCGGGTCCAGTCCCAAAGCTGTTTTAACTGCAGCTCGATGCTCTTTG
TCCAGTAGTGCAGACATTGATTTGATAAGTGTGAAGATGCTATAAGGAGA
ATATACCatattctttttctcttttctctgtTCATCCCGCAACAACTGAG
TGAACATTTTCTCTTCTAATTTTCTTAAAGTACTTCCCGCCTCTTCGTCT
CGTCCAACGACAGCATTGTTACCCGATTCGTCCCGATTAATGACGTCATA
TGTACCCGATTCATCCCGATTGTTGACGTCACAGGTAGTCGACACTTGAA
TTATTCCAAGTAGTATAGCCACTAAAATTTTGTTCAACATTTTTCAGAAA
TCTTACTTTACAACTTTACATCACTTTTCTTTCAGTGTAAAAGCTTCGTT
TTCCTTATTTCTTCCAAAAGATTTTTCGTCTAATTTTTCACTGTTTAAAC
AGGTCCAGTAAACA Coding sequence (CDS) from alignment at scaffold_477:168177..169790 >TCONS_00067951 ID=TCONS_00067951|Name=TCONS_00067951|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_477:168177..169790 (Clytia hemisphaerica)
ttattcaaattcaGGTTTTTGAACAAAACCATGAAAAAGGGTCTTTTTCT
CTTTCACATCTCGTATCATGAATTCGAACGGTCTGTCAACTGTAACTCGT
AATGGCATTGAACGCCCAGAGGCTCCTAGACTTCCAGCACTAGCCTTTGT
TCCTTCCTCGTTCACTTCAATGGCGACTTTCTGTATAACATCCATGAAAT
TGATGTCAGTATTTTTCACAGCCGCAATCCGAGAAAACAACGAATTGAAC
CCAGCTGTTCTCAAAACGTTATTAAGAACAAAATCGCTtgtgattttaaa
ttttggtaGAAATACTTGTATTTTGATTGGTCTGGTCATCTTAGATTCCA
AGATCTCTGTAATATCCTCCTTCCGTTTGGCAGGGTACGTCTGACCAGGG
AGAACTATACAGAAACTATACCTATCTCCTGCATAAGGGATCTCAACAAC
TTCGAAGTTTTCACCACGATGGAATCTCCCTTTGATTGAACCGAACATCA
TTTTGACCTTAACCTTCTCATTTTCACTCACATGGAAATCCATTTCTTTC
GTTTGTTCAGGTTTAAAGGGTATCTTCCAGTGACCATGAAATGCTAATGT
ATTGACAACAAGAACAGAATAGTCGGTAATGATACTGTCTGGTGTTAAGA
GCTCCTTAATCATACCCATAGTGTGATTTGAAACCCACCCATTAATCATA
TCGCTTGTCTTCTTTACATGTCCTTTCATGGGAATCTGCTCAATAATCTG
TTtgtattttttcttgatttctgaATCTAATTCAAGTTTCGAATCGATCC
AAATTTTGTTGGCTTCTTTCAACTCTGGTGATGTGATGGATGGTTTGATA
ACGTCCACGTGGTTCGGGTCCAGTCCCAAAGCTGTTTTAACTGCAGCTCG
ATGCTCTTTGTCCAGTAGTGCAGACATTGATTTGATAAGTGTGAAGATGC
TATAAGGAGAATATACCatattctttttctcttttctctgtTCATCCCGC
AACAACTGAGTGAACATTTTCTCTTCTAATTTTCTTAAAGTACTTCCCGC
CTCTTCGTCTCGTCCAACGACAGCATTGTTACCCGATTCGTCCCGATTAA
TGACGTCATATGTACCCGATTCATCCCGATTGTTGACGTCACAGGTAGTC
GACACTTGAATTATTCCAAGTAGTATAGCCACTAAAATTTTGTTCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067951-exon-scaffold_477-1491911889:168177..169790 | TCONS_00067951-exon-scaffold_477-1491911889:168177..169790 | Clytia hemisphaerica | exon |
| TCONS_00067951-exon-scaffold_477-1510915933:168177..169790 | TCONS_00067951-exon-scaffold_477-1510915933:168177..169790 | Clytia hemisphaerica | exon |
| TCONS_00067951-exon-scaffold_477-1575043694:168177..169790 | TCONS_00067951-exon-scaffold_477-1575043694:168177..169790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:168177..169790 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023796 | Serpin_dom |
Blast
BLAST of TCONS_00067951 vs. Swiss-Prot (Human)
Match: NEUS (Neuroserpin OS=Homo sapiens GN=SERPINI1 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 2.545e-29 Identity = 78/252 (30.95%), Postives = 132/252 (52.38%), Query Frame = 2
Query: 620 SDMINGWVSNHTMGMIKELLTPDSIITDYSVLVVNTLAFHGHWKIPFKPEQTKEMDFHVSENEKVKVKMMFGSIKGRFHRGEN----------FEVVEIPYAGDRYSFCIVLPGQTYPAKRKEDI--TEILE--SKMTRPIKIQVFLPKFKITSDFVLNNVLRTAGFNSLFSRIAAVK----NTDINFMDVIQKVAIEVNEEGTKXXXXXXXXXXRSMPL---RVTVDRPFEFMIRDVKEKKTLFHGFVQKP 1312
++ IN WV N+T ++K+L++P + ++N + F G+WK F+PE T+ F + +V++ MM+ +G F+ GE ++V+EIPY GD S +VL Q P E + +++E + + K++V+LP+F + + L +VL+ G +F + A + N +I I K +EVNEEG++A+A S + M + +V VD PF F+IR+ + LF G V P
Sbjct: 148 ANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQ--QGEFYYGEFSDGSNEAGGIYQVLEIPYEGDEISMMLVLSRQEVPLATLEPLVKAQLVEEWANSVKKQKVEVYLPRFTVEQEIDLKDVLKALGITEIFIKDANLTGLSDNKEIFLSKAIHKSFLEVNEEGSEAAAVSGMIAISRMAVLYPQVIVDHPFFFLIRNRRTGTILFMGRVMHP 397
The following BLAST results are available for this feature:
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