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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067954 ID=TCONS_00067954|Name=TCONS_00067954|organism=Clytia hemisphaerica|type=transcript|length=1294bp
AATCAacctggtctgtaaaatagtcATCCAGTATGGCAGATTTGACGACG
TTGGTTCGAGATATATTTATCAACGGTATACCATTTATAATGCATTGCAT
TGGGTTGTACTTCTTGGTTCAAGTCCGGCACGTCGCCTCCAATACAAACG
CTATACAATacatttattttgttgttataaGTATCAATAATGTTTTATCA
AACGGACTTATTATCACATTAAATGTTTTAACCAATACAAATCCGCAATC
TAAAGCTCGAGTTTTTCTTATGATTCTGGCTAACGGTGGACTATTTGTAT
CATATGCCTTAGTAATGACACTACTAACTATTGATCGTTTCTTAGAGATT
TACTTTAATATTGAATATCCAGTTGTATGGTCAAAACTGAAGACTGAATT
CTGTATTTTTACTTGCTATATTATTGCGTTCTTGTTGAGTGCTTTTCTAG
CGGTCACGCGTGCCACAGTACAGGAGGTGATGACCGTTTTACCGTATTAC
GTATGGCCGACATGTGAAATGATTTTCATAATACCTGCGTTCATTACATA
CGGATATGTTCTTCATAAGATTCACATGAATCGGAAACGCTTTGCAGGGA
CAGTTGTTATCGCAATGAACCGTGAAACGATAACAGTAGATGGTGAATCG
CAAGCAGGCTCTCACACAAGTCATCATGCTTCACGCCGGAACTTTATACG
AATATTACgtggattttttataccaacaCTATTTGTATcgacttttcttc
ttttctggGTTTTGCCAGATATGATTTACCTTGGTTTTGCATTAGCAGGA
AAACAAGCAGAAATCAGTGAGGCCATCAACACATCTTGTGCTGTACTATA
TGCATTAGCTCCCGTCTCGGATGCACTTATATACACATTTGCGTTCCAAC
CTGTAAGACAAAGAATGTTGAAAGTTTCAAGAGATACAtatcataaaatt
ttaaaagtttttcgctGTGGTAGCAAGAATTAATAAAGACTAGCTGTTCC
GGCGTCTTACGAGACACGGTGTTAATCCTCTCTGTACttgctgtttttat
ttttataaaatttcaaaaagtgaaattatTTTCTCAATACTGacagtttt
atgttttattcaAACAAtcttaatacaccttttcgaccgtagtcgcgtca
GGTCAGGCACGTGCCACTTATATcccactaaactcgatccaatccttttt
tgacacatttttctattgtctataggtgcgaaaaaaggactgggacggtt
tagtgggataaagcagtcaaaaaaatgcccgcgcggcatttggc Run BLAST on NCBI protein sequence of TCONS_00067954-protein >TCONS_00067954-protein ID=TCONS_00067954-protein|Name=TCONS_00067954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MADLTTLVRDIFINGIPFIMHCIGLYFLVQVRHVASNTNAIQYIYFVVIS
INNVLSNGLIITLNVLTNTNPQSKARVFLMILANGGLFVSYALVMTLLTI
DRFLEIYFNIEYPVVWSKLKTEFCIFTCYIIAFLLSAFLAVTRATVQEVM
TVLPYYVWPTCEMIFIIPAFITYGYVLHKIHMNRKRFAGTVVIAMNRETI
TVDGESQAGSHTSHHASRRNFIRILRGFFIPTLFVSTFLLFWVLPDMIYL
GFALAGKQAEISEAINTSCAVLYALAPVSDALIYTFAFQPVRQRMLKVSR
DTYHKILKVFRCGSKN Run BLAST on NCBI transcript from alignment at scaffold_477:242364..243657 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067954 ID=TCONS_00067954|Name=TCONS_00067954|organism=Clytia hemisphaerica|type=transcript|length=1294bp|location=Sequence derived from alignment at scaffold_477:242364..243657 (Clytia hemisphaerica)
gccaaatgccgcgcgggcatttttttgactgctttatcccactaaaccgt
cccagtccttttttcgcacctatagacaatagaaaaatgtgtcaaaaaag
gattggatcgagtttagtgggATATAAGTGGCACGTGCCTGACCtgacgc
gactacggtcgaaaaggtgtattaagaTTGTTtgaataaaacataaaact
gtCAGTATTGAGAAAataatttcactttttgaaattttataaaaataaaa
acagcaaGTACAGAGAGGATTAACACCGTGTCTCGTAAGACGCCGGAACA
GCTAGTCTTTATTAATTCTTGCTACCACagcgaaaaacttttaaaatttt
atgataTGTATCTCTTGAAACTTTCAACATTCTTTGTCTTACAGGTTGGA
ACGCAAATGTGTATATAAGTGCATCCGAGACGGGAGCTAATGCATATAGT
ACAGCACAAGATGTGTTGATGGCCTCACTGATTTCTGCTTGTTTTCCTGC
TAATGCAAAACCAAGGTAAATCATATCTGGCAAAACccagaaaagaagaa
aagtcgATACAAATAGtgttggtataaaaaatccacGTAATATTCGTATA
AAGTTCCGGCGTGAAGCATGATGACTTGTGTGAGAGCCTGCTTGCGATTC
ACCATCTACTGTTATCGTTTCACGGTTCATTGCGATAACAACTGTCCCTG
CAAAGCGTTTCCGATTCATGTGAATCTTATGAAGAACATATCCGTATGTA
ATGAACGCAGGTATTATGAAAATCATTTCACATGTCGGCCATACGTAATA
CGGTAAAACGGTCATCACCTCCTGTACTGTGGCACGCGTGACCGCTAGAA
AAGCACTCAACAAGAACGCAATAATATAGCAAGTAAAAATACAGAATTCA
GTCTTCAGTTTTGACCATACAACTGGATATTCAATATTAAAGTAAATCTC
TAAGAAACGATCAATAGTTAGTAGTGTCATTACTAAGGCATATGATACAA
ATAGTCCACCGTTAGCCAGAATCATAAGAAAAACTCGAGCTTTAGATTGC
GGATTTGTATTGGTTAAAACATTTAATGTGATAATAAGTCCGTTTGATAA
AACATTATTGATACttataacaacaaaataaatgtATTGTATAGCGTTTG
TATTGGAGGCGACGTGCCGGACTTGAACCAAGAAGTACAACCCAATGCAA
TGCATTATAAATGGTATACCGTTGATAAATATATCTCGAACCAACGTCGT
CAAATCTGCCATACTGGATgactattttacagaccaggtTGATT Coding sequence (CDS) from alignment at scaffold_477:242364..243657 >TCONS_00067954 ID=TCONS_00067954|Name=TCONS_00067954|organism=Clytia hemisphaerica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_477:242364..243657 (Clytia hemisphaerica)
TTAATTCTTGCTACCACagcgaaaaacttttaaaattttatgataTGTAT
CTCTTGAAACTTTCAACATTCTTTGTCTTACAGGTTGGAACGCAAATGTG
TATATAAGTGCATCCGAGACGGGAGCTAATGCATATAGTACAGCACAAGA
TGTGTTGATGGCCTCACTGATTTCTGCTTGTTTTCCTGCTAATGCAAAAC
CAAGGTAAATCATATCTGGCAAAACccagaaaagaagaaaagtcgATACA
AATAGtgttggtataaaaaatccacGTAATATTCGTATAAAGTTCCGGCG
TGAAGCATGATGACTTGTGTGAGAGCCTGCTTGCGATTCACCATCTACTG
TTATCGTTTCACGGTTCATTGCGATAACAACTGTCCCTGCAAAGCGTTTC
CGATTCATGTGAATCTTATGAAGAACATATCCGTATGTAATGAACGCAGG
TATTATGAAAATCATTTCACATGTCGGCCATACGTAATACGGTAAAACGG
TCATCACCTCCTGTACTGTGGCACGCGTGACCGCTAGAAAAGCACTCAAC
AAGAACGCAATAATATAGCAAGTAAAAATACAGAATTCAGTCTTCAGTTT
TGACCATACAACTGGATATTCAATATTAAAGTAAATCTCTAAGAAACGAT
CAATAGTTAGTAGTGTCATTACTAAGGCATATGATACAAATAGTCCACCG
TTAGCCAGAATCATAAGAAAAACTCGAGCTTTAGATTGCGGATTTGTATT
GGTTAAAACATTTAATGTGATAATAAGTCCGTTTGATAAAACATTATTGA
TACttataacaacaaaataaatgtATTGTATAGCGTTTGTATTGGAGGCG
ACGTGCCGGACTTGAACCAAGAAGTACAACCCAATGCAATGCATTATAAA
TGGTATACCGTTGATAAATATATCTCGAACCAACGTCGTCAAATCTGCCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067954-exon-scaffold_477-1491911889:242364..243657 | TCONS_00067954-exon-scaffold_477-1491911889:242364..243657 | Clytia hemisphaerica | exon |
| TCONS_00067954-exon-scaffold_477-1510915933:242364..243657 | TCONS_00067954-exon-scaffold_477-1510915933:242364..243657 | Clytia hemisphaerica | exon |
| TCONS_00067954-exon-scaffold_477-1575043694:242364..243657 | TCONS_00067954-exon-scaffold_477-1575043694:242364..243657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:242364..243657 . |
Blast
The following BLAST results are available for this feature:
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