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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067970 ID=TCONS_00067970|Name=TCONS_00067970|organism=Clytia hemisphaerica|type=transcript|length=802bp
ATTTTAGACCTTTCCAACTTCAATGGTGGTTCATTTAAATTGAAACTGGG
AAGTCGAACCTCCACCAACTCATTGCGTGCATCAAGTACTACCAAGAAAG
AAGAACTTCAAGCAATGATAGATGACGTCACTGGCATCAAGTGCACATAC
TCTATAAATGTCGATGGAGGCTATTTCTTCCAAGATTTCGAAGCACCTGA
CCCTAGAAATGAAATTGGTACACGTACGTCCGAAAGACCATCAACGTGCG
GACGAAAATCGTTgagattttataaaaacaattggCATAACCTCTTCCAT
CTTGGTCGATCATACCTTCGGAATGGAACGGTGCTCGGACCCTATCGTCT
ACAAGATCACCATTATttttgtttCTCGCATCGTGGAGACGCGAAAGTGT
CGTATGTTCAACTACAAGTCGATTACGGGAATACAGAGAATGCCGATCGT
AGACATGATAACGTACGTATTTCAGACTCAAGCGTCCACAACGAACACAA
ATGTTTCAATATCTATGACGCAGTTACAACTAGTTGGCTCGTAACGAGTG
ATAGAAAACTTGATGTCACTAAGGATATTCTTATCCGCCATCTTTATACT
CGGACGTCATCTTACTGGACGAGAAGTTACTATGACAACGTCTGGATTGG
AAATGAAGAATTGAGAATTACAAGGACAACCGAGCCAgattttgattggt
caaaaaCAGTTACCGTTTCAGACGACCTGGCCATTTCATTACACGCTCAA
GATTGTATGGTCAATATTCCAAGGCTTGAGATCCATGACTGGGCTAAATC
TA Run BLAST on NCBI protein sequence of TCONS_00067970-protein >TCONS_00067970-protein ID=TCONS_00067970-protein|Name=TCONS_00067970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
ILDLSNFNGGSFKLKLGSRTSTNSLRASSTTKKEELQAMIDDVTGIKCTY
SINVDGGYFFQDFEAPDPRNEIGTRTSERPSTCGRKSLRFYKNNWHNLFH
LGRSYLRNGTVLGPYRLQDHHYFCFSHRGDAKVSYVQLQVDYGNTENADR
RHDNVRISDSSVHNEHKCFNIYDAVTTSWLVTSDRKLDVTKDILIRHLYT
RTSSYWTRSYYDNVWIGNEELRITRTTEPDFDWSKTVTVSDDLAISLHAQ
DCMVNIPRLEIHDWAKS Run BLAST on NCBI transcript from alignment at scaffold_478:82461..84788+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067970 ID=TCONS_00067970|Name=TCONS_00067970|organism=Clytia hemisphaerica|type=transcript|length=2328bp|location=Sequence derived from alignment at scaffold_478:82461..84788+ (Clytia hemisphaerica)
ATTTTAGACCTTTCCAACTTCAATGGTGGTTCATTTAAATTGAAACTGGG
AAGTCGAACCTCCACCAACTCATTGCGTGCATCAAGTACTACCAAGAAAG
AAGAACTTCAAGCAATGATAGATGACGTCACTGGCATCAAGTGCACATAC
TCTATAAATGGTAAGCATTGTTAAAAGTTCAGTCTCGACGAAGTATATAA
AGAAGTATTTCCGTTTCCAAATTCtgcatatcaagaatatttGCTAATTA
TActgtgaaaatcaaatttcaagctCATGCGAAATACCTTGCTTTGATTA
TTGGCAGcagtttaaaaaatatttcactgtCCCTTTAGAGCATGGATGGA
CGGATCCATCTCTCATATACCTGTTAAAAAACaaatattatttgaaattt
cGTCCAAATTTTCAAGAGAAAATAAGGGACAATGATAGCTTTTGAAATAA
aggactttttttttctttgatccATAAATCACGTGAGGTGATCTCTGAAG
TAGGTTAGAGAGTCTAGGTCTGTATCTTGTCTTATCTTATCTCTGCTGAA
AAATGTGTCTTTGGGTGACGAAGTttaatttttgactttcttCATTTTAA
TCTTTTCCAGTCGATGGAGGCTATTTCTTCCAAGATTTCGAAGCACCTGA
CCCTAGAAATGAAATTGGTACACGTACGTCCGAAAGACCATCAACGTGCG
GACGAAAATCGTTgagattttataaaaacaattggCATAACCTCTTCCAT
CTTGGTCGATCATACCTTCGGAATGGAACGGTGCTCGGACCCTATCGTCT
ACAAGATCACCATTATGTAAGTTTTTTATAAGTCAAAATATTCGAAACTG
TAATTGCaccccaacctcgttccctgtgtattatcAGTATTTTTATTGCT
TACTGATAGCCTTAGATAATTCTCTGGCGTCTAGCAGTAACGTGAATAAA
ACCTGGAATAGATTTTAGcgataaattttagtttcaatccggcgtctGTG
TAAAAAATatgcgcgggcgttctggatggaaaataagtgaattttgaatg
aaatagCCTGCTGTTTTGACTGGCATGTTTGAATACGGCGACAACAATGG
TATGAATGAATAACACTCCAATTTCtatattttcagttttgtttCTCGCA
TCGTGGAGACGCGAAAGTGTCGTATGTTCAACTACAAGTCGATTACGGGA
ATACAGAGAATGCCGATCGTAGACATGATAACGTACGTATTTCAGACTCA
AGCGTCCACAACGAACACAAATGTTTCAATATCTATGACGCAGTTACAAC
TAGTTGGCTCGTAACGAGTGATAGAAAACTTGATGTCACTAAGGATATTC
TTATCCGCCATCTTTATACTCGGACGTCATCTTACTGGACGAGAAGTTAC
TATGACAACGTCTGGATTGGAAATGAAGAATTGAGAAGTACGTTTTTTCA
TCCGTTTGATTTTAAGTTATGTGTAAAGGTATTGTGCGATattgtctcaa
aaactgaatattaccataatttttagatcgcattagtcgacagaaaatga
ccaaataaATCACAGAACACGAAGGGTGCTATGatgaagtttctaacctg
atgtgtaacctaattattttttcaatgattttcgcgaaaaaccgcaaaag
cTGATTATGAcctcataatcgatgacgtcataaaaactaaaaattgaatt
tctcaaggatTGCTTATCCAattatcttcaaattttcaccaaagataTAT
CTCACTAAGTCAatcatttgcaaaaaaaatatttccgaaattctgattac
gtcagcaaaaggattttttgttttttactaatttgcggtttttaatttta
aaatttttgcggttttaaaattatggtaattttaagacatgccataattt
ACCCGAGTAAGTTAATAGCTGTAAGTGAATTTCAGTGAAAACTCGAATCC
ATTGTCAAATTCGAAATCCCTACgtaaattatattcataaaCGGAAACAC
ttctggcaagaacttattttgACGAGAGTAAGTTGTTTAATCGAGATTAT
GTAAGAAACTATGGATTTTGTAAAATAATCTTGCAATACACAACGCTCAA
GTCAATCCCCTCCTACTGGTTTCCAAGTAATCAAGAATTCCTAAATAATC
AAGGATTCAAATTTATTATTCATTTTATAATGTTTATTTTCAGTTACAAG
GACAACCGAGCCAgattttgattggtcaaaaaCAGTTACCGTTTCAGACG
ACCTGGCCATTTCATTACACGCTCAAGATTGTATGGTCAATATTCCAAGG
CTTGAGATCCATGACTGGGCTAAATCTA Coding sequence (CDS) from alignment at scaffold_478:82461..84788+ >TCONS_00067970 ID=TCONS_00067970|Name=TCONS_00067970|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at scaffold_478:82461..84788+ (Clytia hemisphaerica)
ATTTTAGACCTTTCCAACTTCAATGGTGGTTCATTTAAATTGAAACTGGG
AAGTCGAACCTCCACCAACTCATTGCGTGCATCAAGTACTACCAAGAAAG
AAGAACTTCAAGCAATGATAGATGACGTCACTGGCATCAAGTGCACATAC
TCTATAAATGTCGATGGAGGCTATTTCTTCCAAGATTTCGAAGCACCTGA
CCCTAGAAATGAAATTGGTACACGTACGTCCGAAAGACCATCAACGTGCG
GACGAAAATCGTTgagattttataaaaacaattggCATAACCTCTTCCAT
CTTGGTCGATCATACCTTCGGAATGGAACGGTGCTCGGACCCTATCGTCT
ACAAGATCACCATTATttttgtttCTCGCATCGTGGAGACGCGAAAGTGT
CGTATGTTCAACTACAAGTCGATTACGGGAATACAGAGAATGCCGATCGT
AGACATGATAACGTACGTATTTCAGACTCAAGCGTCCACAACGAACACAA
ATGTTTCAATATCTATGACGCAGTTACAACTAGTTGGCTCGTAACGAGTG
ATAGAAAACTTGATGTCACTAAGGATATTCTTATCCGCCATCTTTATACT
CGGACGTCATCTTACTGGACGAGAAGTTACTATGACAACGTCTGGATTGG
AAATGAAGAATTGAGAATTACAAGGACAACCGAGCCAgattttgattggt
caaaaaCAGTTACCGTTTCAGACGACCTGGCCATTTCATTACACGCTCAA
GATTGTATGGTCAATATTCCAAGGCTTGAGATCCATGACTGGGCTAAATC
TATTTTAGACCTTTCCAACTTCAATGGTGGTTCATTTAAATTGAAACTGG
GAAGTCGAACCTCCACCAACTCATTGCGTGCATCAAGTACTACCAAGAAA
GAAGAACTTCAAGCAATGATAGATGACGTCACTGGCATCAAGTGCACATA
CTCTATAAATGTCGATGGAGGCTATTTCTTCCAAGATTTCGAAGCACCTG
ACCCTAGAAATGAAATTGGTACACGTACGTCCGAAAGACCATCAACGTGC
GGACGAAAATCGTTgagattttataaaaacaattggCATAACCTCTTCCA
TCTTGGTCGATCATACCTTCGGAATGGAACGGTGCTCGGACCCTATCGTC
TACAAGATCACCATTATttttgtttCTCGCATCGTGGAGACGCGAAAGTG
TCGTATGTTCAACTACAAGTCGATTACGGGAATACAGAGAATGCCGATCG
TAGACATGATAACGTACGTATTTCAGACTCAAGCGTCCACAACGAACACA
AATGTTTCAATATCTATGACGCAGTTACAACTAGTTGGCTCGTAACGAGT
GATAGAAAACTTGATGTCACTAAGGATATTCTTATCCGCCATCTTTATAC
TCGGACGTCATCTTACTGGACGAGAAGTTACTATGACAACGTCTGGATTG
GAAATGAAGAATTGAGAATTACAAGGACAACCGAGCCAgattttgattgg
tcaaaaaCAGTTACCGTTTCAGACGACCTGGCCATTTCATTACACGCTCA
AGATTGTATGGTCAATATTCCAAGGCTTGAGATCCATGACTGGGCTAAAT
CTATTTTAGACCTTTCCAACTTCAATGGTGGTTCATTTAAATTGAAACTG
GGAAGTCGAACCTCCACCAACTCATTGCGTGCATCAAGTACTACCAAGAA
AGAAGAACTTCAAGCAATGATAGATGACGTCACTGGCATCAAGTGCACAT
ACTCTATAAATGTCGATGGAGGCTATTTCTTCCAAGATTTCGAAGCACCT
GACCCTAGAAATGAAATTGGTACACGTACGTCCGAAAGACCATCAACGTG
CGGACGAAAATCGTTgagattttataaaaacaattggCATAACCTCTTCC
ATCTTGGTCGATCATACCTTCGGAATGGAACGGTGCTCGGACCCTATCGT
CTACAAGATCACCATTATttttgtttCTCGCATCGTGGAGACGCGAAAGT
GTCGTATGTTCAACTACAAGTCGATTACGGGAATACAGAGAATGCCGATC
GTAGACATGATAACGTACGTATTTCAGACTCAAGCGTCCACAACGAACAC
AAATGTTTCAATATCTATGACGCAGTTACAACTAGTTGGCTCGTAACGAG
TGATAGAAAACTTGATGTCACTAAGGATATTCTTATCCGCCATCTTTATA
CTCGGACGTCATCTTACTGGACGAGAAGTTACTATGACAACGTCTGGATT
GGAAATGAAGAATTGAGAATTACAAGGACAACCGAGCCAgattttgattg
gtcaaaaaCAGTTACCGTTTCAGACGACCTGGCCATTTCATTACACGCTC
AAGATTGTATGGTCAATATTCCAAGGCTTGAGATCCATGACTGGGCTAAA
TCTATTTTAGACCTTTCCAACTTCAATGGTGGTTCATTTAAATTGAAACT
GGGAAGTCGAACCTCCACCAACTCATTGCGTGCATCAAGTACTACCAAGA
AAGAAGAACTTCAAGCAATGATAGATGACGTCACTGGCATCAAGTGCACA
TACTCTATAAATGTCGATGGAGGCTATTTCTTCCAAGATTTCGAAGCACC
TGACCCTAGAAATGAAATTGGTACACGTACGTCCGAAAGACCATCAACGT
GCGGACGAAAATCGTTgagattttataaaaacaattggCATAACCTCTTC
CATCTTGGTCGATCATACCTTCGGAATGGAACGGTGCTCGGACCCTATCG
TCTACAAGATCACCATTATttttgtttCTCGCATCGTGGAGACGCGAAAG
TGTCGTATGTTCAACTACAAGTCGATTACGGGAATACAGAGAATGCCGAT
CGTAGACATGATAACGTACGTATTTCAGACTCAAGCGTCCACAACGAACA
CAAATGTTTCAATATCTATGACGCAGTTACAACTAGTTGGCTCGTAACGA
GTGATAGAAAACTTGATGTCACTAAGGATATTCTTATCCGCCATCTTTAT
ACTCGGACGTCATCTTACTGGACGAGAAGTTACTATGACAACGTCTGGAT
TGGAAATGAAGAATTGAGAATTACAAGGACAACCGAGCCAgattttgatt
ggtcaaaaaCAGTTACCGTTTCAGACGACCTGGCCATTTCATTACACGCT
CAAGATTGTATGGTCAATATTCCAAGGCTTGAGATCCATGACTGGGCTAA
ATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067970-exon-scaffold_478-1491911889:82461..82620 | TCONS_00067970-exon-scaffold_478-1491911889:82461..82620 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1510915933:82461..82620 | TCONS_00067970-exon-scaffold_478-1510915933:82461..82620 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1575043694:82461..82620 | TCONS_00067970-exon-scaffold_478-1575043694:82461..82620 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1491911889:83071..83276 | TCONS_00067970-exon-scaffold_478-1491911889:83071..83276 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1510915933:83071..83276 | TCONS_00067970-exon-scaffold_478-1510915933:83071..83276 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1575043694:83071..83276 | TCONS_00067970-exon-scaffold_478-1575043694:83071..83276 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1491911889:83597..83897 | TCONS_00067970-exon-scaffold_478-1491911889:83597..83897 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1510915933:83597..83897 | TCONS_00067970-exon-scaffold_478-1510915933:83597..83897 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1575043694:83597..83897 | TCONS_00067970-exon-scaffold_478-1575043694:83597..83897 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1491911889:84654..84788 | TCONS_00067970-exon-scaffold_478-1491911889:84654..84788 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1510915933:84654..84788 | TCONS_00067970-exon-scaffold_478-1510915933:84654..84788 | Clytia hemisphaerica | exon |
| TCONS_00067970-exon-scaffold_478-1575043694:84654..84788 | TCONS_00067970-exon-scaffold_478-1575043694:84654..84788 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:82461..84788 + |
Blast
The following BLAST results are available for this feature:
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