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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067996 ID=TCONS_00067996|Name=TCONS_00067996|organism=Clytia hemisphaerica|type=transcript|length=558bp
GGTGTGTACGTTAAGAAGAAGTTGAACTCTAAAGAACTTGGAAAATACGG
CTTACTGTATTATAACAGTTTGTTCATGCTCCCTGTAGCTCTTACAATGG
CTGCACTGAATGGTGAAGTTGCTAAGGTGCGTAATTTTGATGGTTGGCAT
AACCCGACGTTCCTTGTTCAATTGTTTATGTCATGCACCATGGGGTTTGT
TTTGAACTATGCAACAGTGCTTTGCACGCAAGCTAACTCCGCATTAACTA
CAACTATTGTTGGATGTTTAAAGTATATTTGGAAGCATCGTTTATTCGTA
CATTGTCTTTGTGGAAAAGGAAAAACCTCCGTCGCCAGTGTTACCTACGA
AAACAGTTagtaatttataatttttaatctttaaaaaagaaaagatatat
tattattattgataATCAAATATTTAGGCaacaattttttagaaatattt
taaggTTATAGTATCACGTAGTATTTTGTtggattgggcttttccagaaa
aaaattgaatatgggggtggaggatacaACGATTTACCctccggacaaag
tgactttt Run BLAST on NCBI transcript from alignment at scaffold_478:273874..278363+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067996 ID=TCONS_00067996|Name=TCONS_00067996|organism=Clytia hemisphaerica|type=transcript|length=4490bp|location=Sequence derived from alignment at scaffold_478:273874..278363+ (Clytia hemisphaerica)
GGTGTGTACGTTAAGAAGAAGTTGAACTCTAAAGAACTTGGAAAATACGG
CTTACTGTATTATAACAGTTTGTTCATGCTCCCTGTAGCTCTTACAATGG
CTGCACTGAATGGTGAAGTTGCTAAGGTATCAGATTGAATTCACCcatta
tacatttttttataagaacatccaatttttttaaagcctgaggatgttct
taactttttgagctttatgcctaaaaatgttcttacatgttcttattttc
accattttgtgattattattgtccattttcttaagaattaTGAccatttt
agagtctgcaaagccttaattTGTTCATAACAtattggccatcaaagcct
tatgttcttatatagtttgttcttataaaaaaacgtgtaatgtatGATGA
GATTGCCTGATCTTTTTATTTACAATTCTGACCAGGGACATGTCTGGATC
TTGTCGACCGTAGTTGCAAGAACATTCAGCGAAAAGTCGCGGATGCCATT
TAATTACTTAAAAAACCTAAATAGCGCTCCCAATCCATTCCCACTGCACT
TTTTAACCTTAGAACAATACAATTTCTACCCCCATTGgtatttcaataga
aattcttatccccactgaggaaaaaagttacACCAGGGCTGTGttacatt
ttgaataaaaatttccaaaacttaCATAAATATATGGATTGTTCGTGTTT
AATTTTTTCAAGGTGCGTAATTTTGATGGTTGGCATAACCCGACGTTCCT
TGTTCAATTGTTTATGTCATGCACCATGGGGTAAGAGAACGTGTTTCAGG
ATTCATCTTTTTAACCCTATTAAGAGTTTATCTCAAAAGTATGCGGACAc
tttcattttttgacattttctcagcATGGATTAATGATGTATTAAAAAGC
TATActccattggaaagatatttcaaaggagaataatctaaaggataaaa
taattttagaagataaaaagtgaagatttttttattgtctTAATTTAAAA
cttgctgatttcaaatctaTGTTTAGGTTTTTACGTATCTTTCTTAGATA
AAAAAACAGCCCTTTCAAGTAGCCCTAAAACGGCCAAAAACATCTAAAAT
GACCAACTGGCTTCCCCAAATATGTCTTTTTATTGGACTggattttttaa
aggaaaatagtAATGTttattgactttttcttttttttttcttttcatcg
tcATAGGTTTGTTTTGAACTATGCAACAGTGCTTTGCACGCAAGCTAACT
CCGCATTAACTACAACTATTGTTGGATGTTTAAAGgtacattgggctttt
ccagaaaaaatttgaatatggggccCCCCCATGGAAAATAtgacaatttt
cagtgatttacccccggacaaagtgattTTAGGCATcccggacaacgggt
tttaccccTCCGGACAAGTATCACTTGATATTGATaagcctcgagctaag
tacacattgtTTACATACTTtacatcaactttaaagaaaagaaacataaa
cagaCCCCCCAGACAacccaaatttaccccccggacaaggcaaattttga
tgatttttcaaaatccttcggacaatatatcctccaccccccatgtaggg
acattttctggaagagcccattcctTGCATTTATATGCGCTagaatcact
gacctttataaaacCTGGAGGCATTTTCTTAAtacttaaaatatttattc
ggagtttttctgaaagttttACCCTAATGATGGCACCACTCAATAGTGGT
GTAAATGCATTGAGAGccctagatctacttttccttgaaTATTTGTGATC
ATGTATCTTCGTTTTACAACACTATAATGGCTTCTCTGCGGGTACCACTA
TCAAagaaactccgatcaaagatggtggatatagcttaGTCCAGGGTGCC
TAATAAACATCGACTTTTCCCAACTTCCTGGACCTCATTAGGACCCCCTC
CCCcggttttttcattaaaatattctCAGCTTTCAAAAGAAGAGTTCCTT
ATATGTATCTAAGTTTTTTGTTTCTAATTACCATTATTTTGGGGACCTAT
GTAGAGGTATAATTTCCAGCCCATTGGCAACTGAGAGTATATTTGTGGCT
CCGGTTCATAACTACGAGTCTCATTTTTTCATTCGATAGAACATCTTGGT
GACGTATTTTGGGATGGTTGTCGGTGGAGACTACGTGTTCAGTTGGACCA
ATTTTCTTGGTTTGAATATCAGGtaaaaatatctttgtttcgaCTGTTTA
TAAACATCAGATTAGATTTTGCTGAGccaccgtagtgcagtggtagagca
tccggctacgttTCGCAAGGTTGTAGTcgacccccagccgggtcatacca
aagattaccaaaatggtacttgatgcctctctgcttgatgttcagcaatt
aagagaaggatcaagggtaagtggagcagtccagggagaaagagtggcgc
catcccctaccttcgggtagatagctatcgaaagaggagcctacAGGTCC
CCTCCGACTGTGgccgcagacttacttacttttaaTAAACTTTTAATGTT
gcgatttatttatttttgagtttttatataataattatCTCGAGAAAAGG
GTTGTGCTAGGGTTTTAAATGCAAGGTAAAATTCATATTTGATCGTAAAA
GTATTTCTTACCATTTCATAGATTAAGTCGCAGAGttcttaattaatttt
tgatatAAATTGCTCTGCTATGGTCTATCGAGCATTCAGTTTGAAGTGGT
TTTCACACatacgccggattgaaagtagtATTTATCGCGAGATTTCTATA
ATTATATTGtatgaaaataaacaaagtgcCAGATTCAATCTGCCACTtgt
aaggcttcactttttcttgcttgagaaaggatGAATGGTTTAAGATTTCT
TTCCTGTTTCGATTTTTAAACTCAACGGTATCGAGCACTTTtcaatccca
gctggcacataacgttgttttaacattcaaataatgttatttggacgtta
tgaatgtcacatggacgttgttttgacgttgtgtgccttCTAGGATAAAT
TGAAATCGGATTCGCCACTAATCATAAGATTACATATGACATCCTTGTGT
CACCATagaggtaataaagatagatggagagtcaatgccttttgttctat
tctgatttatcatcgggagcaaacagctgtttggttgcttttggaataag
atgattaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaca
atactccaaacttctaggggaagctgcccataaagccatcgatagatttt
aaaaagaattacgtgttacgattaggaaccttgtatcgatcattttatCA
GAGaatgaaaaccgctgcccacttagacgtgaagattttaagataagaaa
ctttcaatgataatgtgatgtaACTCTCAATGTtgacaaaatgccagccc
aaaaatgtgtccttatgaaattaatatactcttttagtcttacatcagtt
gaaactatttcgaatcgcattttaacaaggattttcggcaaaattaagtt
tttcaaaatcaaccaaacagtctctttctgttcttataaagttataaatt
gaagttttttgcttacaatgatggtacatcaaagaaaagccgctttgaat
agatttataaaagattccaacgaccatttagatcattaccgagacgtttt
ctctctttattacctccatggtgtCACAGACCCCTTGGGACCctagcccc
actgaaaaatttttgccaaaatttcgtcccggtggacaaaataccctaca
atttcagccacactgggaaattgactttgctGTCCAAACCCACCTCTACT
GGATATTTTAAGCTCGgcaacaatagaatttctatccctattgggatttc
gatagtaatctttatccccactgtgggaaaaaaccaccggggctgtgaga
caggggtgtcatatGAAAAATGATAACATTCTTGTATACTCTTTCTCATT
CTCAGTATATTTGGAAGCATCGTTTATTCGTACATTGTCTTTGTGGAAAA
GGAAAAACCTCCGTCGCCAGTGTTACCTACGAAAACAGTTagtaatttat
aatttttaatctttaaaaaagaaaagatatattattattattgataATCA
AATATTTAGGCaacaattttttagaaatattttaaggTTATAGTATCACG
TAGTATTTTGTtggattgggcttttccagaaaaaaattgaatatgggggt
ggaggatacaACGATTTACCctccggacaaagtgactttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067996-exon-scaffold_478-1491911889:273874..273999 | TCONS_00067996-exon-scaffold_478-1491911889:273874..273999 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1510915933:273874..273999 | TCONS_00067996-exon-scaffold_478-1510915933:273874..273999 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1575043694:273874..273999 | TCONS_00067996-exon-scaffold_478-1575043694:273874..273999 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1491911889:274586..274653 | TCONS_00067996-exon-scaffold_478-1491911889:274586..274653 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1510915933:274586..274653 | TCONS_00067996-exon-scaffold_478-1510915933:274586..274653 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1575043694:274586..274653 | TCONS_00067996-exon-scaffold_478-1575043694:274586..274653 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1491911889:275080..275158 | TCONS_00067996-exon-scaffold_478-1491911889:275080..275158 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1510915933:275080..275158 | TCONS_00067996-exon-scaffold_478-1510915933:275080..275158 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1575043694:275080..275158 | TCONS_00067996-exon-scaffold_478-1575043694:275080..275158 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1491911889:278079..278363 | TCONS_00067996-exon-scaffold_478-1491911889:278079..278363 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1510915933:278079..278363 | TCONS_00067996-exon-scaffold_478-1510915933:278079..278363 | Clytia hemisphaerica | exon |
| TCONS_00067996-exon-scaffold_478-1575043694:278079..278363 | TCONS_00067996-exon-scaffold_478-1575043694:278079..278363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:273874..278363 + |
Blast
BLAST of TCONS_00067996 vs. Swiss-Prot (Human)
Match: S35D1 (UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter OS=Homo sapiens GN=SLC35D1 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.832e-33 Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1
Query: 1 GVYVKKKLNSKELGKYGLLYYNSLFMLPVALTMAALNGEVAKVRNFDGWHNPTFLVQLFMSCTMGFVLNYATVLCTQANSALTTTIVGCLKYI 279
G YVK+KL+SKELGKYGLLYYN+LFM+ L +A G+ K F+GW + FL+Q +SC MGF+L YATVLCTQ NSALTTTIVGC+K I
Sbjct: 202 GAYVKQKLDSKELGKYGLLYYNALFMILPTLAIAYFTGDAQKAVEFEGWADTLFLLQFTLSCVMGFILMYATVLCTQYNSALTTTIVGCIKNI 294
The following BLAST results are available for this feature:
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